Description: <short summary of the patch>
 TODO: Put a short summary on the line above and replace this paragraph
 with a longer explanation of this change. Complete the meta-information
 with other relevant fields (see below for details). To make it easier, the
 information below has been extracted from the changelog. Adjust it or drop
 it.
 .
 samtools (1.0-1) unstable; urgency=low
 .
   [ Charles Plessy ]
   54ca0c1 Merge with upstream's develop branch.
   241a731 razip was removed from samtools.
   dc25b81 debian/watch: also track release candidates.
   07aaf71 Indicate repository layout in git-buildpackage conf. file.
 .
   * debian/control
 .
   8bc0fb7 Stop depending on CDBS and quilt.
   e613142 Drop static libbam, replaced by the dynamic libhts (Closes: #544976).
   b5f284c Build-depend on tabix for the regression tests, that use bgzip.
   9febad6 Recommend python since samtools installs a python script in /usr/bin.
   0446ed7 Conforms with Policy 3.5.6.
 .
   * New package samtools-test
 .
   7293cca Create a test package for the test data.
   6bd7b89 Adjust install file for two-package build.
   caff5f5 Clean before installing test files (this removes compiled files).
 .
   * debian/rules
 .
   c930cbb Use Debhelper instead of CDBS and rely on the new upstream Makefile.
   845581d Adjust for dynamic linking.
   d859052 Indicate path to packaged bgzip.
   cb23517 Mimick Makefile's CPPFLAGS.
   aee1c6c Allow parallel building.
   edc09e4 Prevent Makefile from including local copy of the HTSlib.
 .
   * debian/patches
 .
   f73d764 d062687 Refreshed patches.
   2c52f6a 61ac2c5 Forwarded patches on GitHub.
   b8eb378 Dropped fix_example_makefile.patch, obsolete.
   66079b9 Correct path to python interpreter.
   218c1c1 Modify Makefile to facilitate dynamic linking.
 .
   [ Andreas Tille ]
   f69f412 Versioned Build-Depends libhts-dev >= 1.0
Author: Charles Plessy <plessy@debian.org>
Bug-Debian: https://bugs.debian.org/544976

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Last-Update: <YYYY-MM-DD>

--- /dev/null
+++ samtools-1.0/.travis.yml
@@ -0,0 +1,18 @@
+# Control file for continuous integration testing at http://travis-ci.org/
+
+language: c
+compiler:
+  - clang
+  - gcc
+
+matrix:
+  include:
+    # An unoptimised C99 build, for detecting non-static inline functions
+    - compiler: gcc
+      env: CFLAGS="-std=gnu99 -O0"
+
+before_script:
+  - git clone --depth=5 --branch=develop git://github.com/samtools/htslib.git
+  - export HTSDIR=./htslib
+
+script: make -e && make -e test
--- /dev/null
+++ samtools-1.0/README.md
@@ -0,0 +1,13 @@
+samtools
+========
+
+This is the official development repository for samtools.
+
+The original samtools package has been split into three separate
+but tightly coordinated projects:
+- [htslib](https://github.com/samtools/htslib): C-library for handling high-throughput sequencing data
+- samtools: mpileup and other tools for handling SAM, BAM, CRAM
+- [bcftools](https://github.com/samtools/bcftools): calling and other tools for handling VCF, BCF
+
+See also http://github.com/samtools/
+
