Examples

A note about the examples

The examples here are some uses of the analysis and visualization functionality of nitime, with example data from actual neuroscience experiments, or with synthetic data, which is generated as part of the example.

All the examples presented in the documentation are generated from fully functioning python scripts, which are available as part of the source distribution in the doc/examples folder.

If you want to replicate a particular analysis or visualization, simply copy the relevant ”.py” script from the source distribution, or download the script using the link at the bottom of each page.

Thanks to the developers of PyMVPA for designing the software which enables us to provide these documented examples!

• Caclulation of Signal to noise and information
• Coherency analysis of fMRI data
• Mulitvariate auto-regressive modeling
• Fitting an MAR model: analyzer interface
• Auditory processing in grasshoppers
• Filtering and normalizing fMRI data
• Multi-taper coherence estimation
• Multi-taper spectral estimation
• Fitting an AR model: algorithm module interface
• Granger ‘causality’ of fMRI data
  • References
• Multitaper method for baseband demodulation
  • Test 1
  • Test 2
• Multitaper F-test for harmonic components
• Seed correlation/coherence with fMRI data
• Mulitvariate auto-regressive modeling - 3 variables
• Event-related fMRI