picard.illumina.parser

Class TileIndex

java.lang.Object

picard.illumina.parser.TileIndex

All Implemented Interfaces:

Iterable<TileIndex.TileIndexRecord>

public class TileIndex
extends Object
implements Iterable<TileIndex.TileIndexRecord>

Load a file containing 8-byte records like this: tile number: 4-byte int number of clusters in tile: 4-byte int Number of records to read is determined by reaching EOF.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TileIndex.TileIndexRecord

Method Summary

Methods

Modifier and Type	Method and Description
TileIndex.TileIndexRecord	findTile(int tileNumber)
File	getFile()
int	getNumTiles()
List<Integer>	getTiles()
Iterator<TileIndex.TileIndexRecord>	iterator()
List<String>	verify(List<Integer> expectedTiles)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getFile

public File getFile()

getNumTiles

public int getNumTiles()

getTiles

public List<Integer> getTiles()

verify

public List<String> verify(List<Integer> expectedTiles)

iterator

public Iterator<TileIndex.TileIndexRecord> iterator()

Specified by:

iterator in interface Iterable<TileIndex.TileIndexRecord>

findTile

public TileIndex.TileIndexRecord findTile(int tileNumber)

Throws:

NoSuchElementException - if tile is not found