[Friday March 01 22:33:48 2019] [Notice] Using the settings file ./sample_projects/test_blastx/project_settings.conf.
[Friday March 01 22:33:48 2019] [Notice] Splitting the reference genome sequence in ./sample_projects/test_blastx/reference_genome for BLAST searches.
[Friday March 01 22:33:48 2019] [Notice] Reference genome sequence has been split and written to ./sample_projects/test_blastx/reference_genome/split.
[Friday March 01 22:33:48 2019] [Notice] Copying protein sequences in ./sample_projects/test_blastx/comparison_genomes for BLAST searches.
[Friday March 01 22:33:48 2019] [Notice] Protein sequences have been copied to ./sample_projects/test_blastx/comparison_genomes/proteins.
[Friday March 01 22:33:48 2019] [Notice] Creating BLAST databases using the files in ./sample_projects/test_blastx/comparison_genomes/proteins.
[Friday March 01 22:33:48 2019] [Notice] The BLAST databases have been created in ./sample_projects/test_blastx/blast/blast_db.
[Friday March 01 22:33:48 2019] [Notice] Performing BLAST comparisons between sequences in ./sample_projects/test_blastx/reference_genome/split and databases in ./sample_projects/test_blastx/blast/blast_db.
[Friday March 01 22:33:48 2019] [Notice] The BLAST results have been written to ./sample_projects/test_blastx/blast/blast_results_local.
[Friday March 01 22:33:48 2019] [Notice] Assigning COG categories to CDS translations from reference genome sequence in ./sample_projects/test_blastx/reference_genome.
[Friday March 01 22:33:48 2019] [Notice] COG categories have been written to ./sample_projects/test_blastx/features.
[Friday March 01 22:33:48 2019] [Notice] Creating CGView XML files.
[Friday March 01 22:33:48 2019] [Notice] CGView XML files have been created in ./sample_projects/test_blastx/maps/cgview_xml.
[Friday March 01 22:33:48 2019] [Notice] Creating CGView maps.
[Friday March 01 22:33:52 2019] [Notice] CGView maps have been created in ./sample_projects/test_blastx/maps.
