[Friday March 01 22:33:44 2019] [Notice] Using the settings file ./sample_projects/test_blastn/project_settings.conf.
[Friday March 01 22:33:44 2019] [Notice] Splitting the reference genome sequence in ./sample_projects/test_blastn/reference_genome for BLAST searches.
[Friday March 01 22:33:44 2019] [Notice] Reference genome sequence has been split and written to ./sample_projects/test_blastn/reference_genome/split.
[Friday March 01 22:33:44 2019] [Notice] Splitting the comparison genome sequences in ./sample_projects/test_blastn/comparison_genomes for BLAST searches.
[Friday March 01 22:33:44 2019] [Notice] Comparison genome sequences have been split and written to ./sample_projects/test_blastn/comparison_genomes/split.
[Friday March 01 22:33:44 2019] [Notice] Creating BLAST databases using the files in ./sample_projects/test_blastn/comparison_genomes/split.
[Friday March 01 22:33:44 2019] [Notice] The BLAST databases have been created in ./sample_projects/test_blastn/blast/blast_db.
[Friday March 01 22:33:44 2019] [Notice] Performing BLAST comparisons between sequences in ./sample_projects/test_blastn/reference_genome/split and databases in ./sample_projects/test_blastn/blast/blast_db.
[Friday March 01 22:33:44 2019] [Notice] The BLAST results have been written to ./sample_projects/test_blastn/blast/blast_results_local.
[Friday March 01 22:33:44 2019] [Notice] Assigning COG categories to CDS translations from reference genome sequence in ./sample_projects/test_blastn/reference_genome.
[Friday March 01 22:33:44 2019] [Notice] COG categories have been written to ./sample_projects/test_blastn/features.
[Friday March 01 22:33:44 2019] [Notice] Creating CGView XML files.
[Friday March 01 22:33:44 2019] [Notice] The following BLAST results will be drawn, from outside to center:
[Friday March 01 22:33:44 2019] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf.fasta_split_DNA_blastn
[Friday March 01 22:33:44 2019] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_end_of_orf_rev_comp.fasta_split_DNA_blastn
[Friday March 01 22:33:44 2019] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf.fasta_split_DNA_blastn
[Friday March 01 22:33:44 2019] [Notice] two_copies_of_long_ORF_opposite_directions_DNA_vs_match_start_of_orf_rev_comp.fasta_split_DNA_blastn
[Friday March 01 22:33:44 2019] [Notice] CGView XML files have been created in ./sample_projects/test_blastn/maps/cgview_xml.
[Friday March 01 22:33:44 2019] [Notice] Creating CGView maps.
[Friday March 01 22:33:48 2019] [Notice] CGView maps have been created in ./sample_projects/test_blastn/maps.
