Constant Field Values

Contents

• beagleutil.*
• blbutil.*
• bref.*
• main.*
• vcf.*

beagleutil.*

beagleutil.ThreadSafeIndexer<T>

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INIT_CAPACITY	500

blbutil.*

blbutil.Const

Modifier and Type	Constant Field	Value
public static final char	colon	58
public static final char	comma	44
public static final int	giga	1000000000
public static final char	hyphen	45
public static final int	mega	1000000
public static final char	MISSING_DATA_CHAR	46
public static final java.lang.String	MISSING_DATA_STRING	"."
public static final char	phasedSep	124
public static final char	semicolon	59
public static final char	tab	9
public static final char	unphasedSep	47

blbutil.FloatList

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INIT_CAPACITY	10

blbutil.InputIt

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_BUFFER_SIZE	4194304

blbutil.IntList

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INIT_CAPACITY	16

bref.*

bref.AsIsBref3Writer

Modifier and Type	Constant Field	Value
public final int	MAX_BLOCK_BYTES	2147483647
public final int	MAX_SAMPLES	536870911

bref.BrefWriter

Modifier and Type	Constant Field	Value
public static final byte	ALLELE_CODED	1
public static final int	END_OF_DATA	0
public static final long	END_OF_INDEX	-999999999999999L
public static final int	MAGIC_NUMBER_V2	223579146
public static final int	MAGIC_NUMBER_V3	2055763188
public static final byte	SEQ_CODED	0

bref.SeqCoder3

Modifier and Type	Constant Field	Value
public static final float	COMPRESS_FREQ_THRESHOLD	0.9950000047683716f
public static final int	MAX_NALLELES	255

main.*

main.Main

Modifier and Type	Constant Field	Value
public static final java.lang.String	COMMAND	"java -jar beagle.15Sep18.8a0.jar"
public static final java.lang.String	COPYRIGHT	"Copyright (C) 2014-2016 Brian L. Browning"
public static final java.lang.String	PROGRAM	"beagle.15Sep18.8a0.jar"
public static final java.lang.String	VERSION	"(version 5.0)"

vcf.*

vcf.BitSetGT

Modifier and Type	Constant Field	Value
public static final java.lang.String	GT_FORMAT	"GT"

vcf.RefIt

Modifier and Type	Constant Field	Value
public static final int	MAX_EM_BUFFER_SIZE	1000

vcf.VcfHeader

Modifier and Type	Constant Field	Value
public static final java.lang.String	HEADER_PREFIX	"#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT"

vcf.VcfIt<E extends MarkerContainer>

Modifier and Type	Constant Field	Value
public static final int	MAX_EM_BUFFER_SIZE	1000

vcf.VcfMetaInfo

Modifier and Type	Constant Field	Value
public static final char	DELIMITER	61
public static final java.lang.String	PREFIX	"##"

vcf.VcfRecBuilder

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_INIT_SIZE	50

vcf.VcfRecord

Modifier and Type	Constant Field	Value
public static final java.lang.String	GL_FORMAT	"GL"
public static final java.lang.String	PL_FORMAT	"PL"