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abortOnFirstJobFailure() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whether seqexec trips on the first job failure.
abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
abortOnFristJobFailure() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
Abstract - Class in edu.isi.pegasus.common.credential.impl: An abstract base class to be used by other CredentialHandler implementations.
Abstract() - Constructor for class edu.isi.pegasus.common.credential.impl.Abstract: The default constructor.
Abstract - Class in edu.isi.pegasus.planner.catalog.site.impl.old: An abstract implementation of the PoolInfoProvider.
Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
Abstract - Class in edu.isi.pegasus.planner.catalog.transformation.impl: An abstract base class that provides useful methods for all the TransformationCatalog Implementations to use.
Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
Abstract - Class in edu.isi.pegasus.planner.cluster: An abstract clusterer that the other clusterers can extend.
Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.Abstract: The Abstract constructor.
Abstract - Class in edu.isi.pegasus.planner.cluster.aggregator: An abstract implementation of the JobAggregator interface, which the other implementations can choose to extend.
Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The default constructor.
Abstract - Class in edu.isi.pegasus.planner.code.generator: An Abstract Base class implementing the CodeGenerator interface.
Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.Abstract
Abstract - Class in edu.isi.pegasus.planner.code.generator.condor.style: An abstract implementation of the CondorStyle interface.
Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: The default constructor.
Abstract - Class in edu.isi.pegasus.planner.namespace.aggregator: An abstract implementation of the Profile Aggregators.
Abstract() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Abstract
Abstract - Class in edu.isi.pegasus.planner.selector.site: The Abstract Site selector.
Abstract() - Constructor for class edu.isi.pegasus.planner.selector.site.Abstract
Abstract - Class in edu.isi.pegasus.planner.transfer.implementation: An abstract implementation that implements some of the common functions in the Implementation Interface that are required by all the implementations.
Abstract(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Abstract: The overloaded constructor, that is called by the Factory to load the class.
AbstractJob - Class in edu.isi.pegasus.planner.dax
AbstractJob() - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
AbstractJob(AbstractJob) - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob: Copy constructor
AbstractLogFormatter - Class in edu.isi.pegasus.common.logging.format: The abstract formatter that implements all of the functions except the addEvent function
AbstractLogFormatter() - Constructor for class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: The default constructor.
AbstractMultipleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation: An abstract implementation for implementations that can handle multiple file transfers in a single file transfer job.
AbstractMultipleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: The overloaded constructor, that is called by the Factory to load the class.
AbstractPerJob - Class in edu.isi.pegasus.planner.selector.site: The base class for the site selectors that want to map one job at a time.
AbstractPerJob() - Constructor for class edu.isi.pegasus.planner.selector.site.AbstractPerJob
AbstractRefiner - Class in edu.isi.pegasus.planner.transfer: An abstract implementation that implements some of the common functions in the Refiner Interface and member variables that are required by all the refiners.
AbstractRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.AbstractRefiner: The overloaded constructor.
AbstractSingleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation: An abstract implementation for implementations that can handle only a single file transfer in a single file transfer job.
AbstractSingleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: The overloaded constructor, that is called by the Factory to load the class.
AbstractSiteCatalogResource - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class defines a AbstractSiteCatalogResoure type.
AbstractSiteCatalogResource() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
AbstractSiteData - Class in edu.isi.pegasus.planner.catalog.site.classes: The abstract data class for Site classes.
AbstractSiteData() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
AbstractStrategy - Class in edu.isi.pegasus.planner.refiner.createdir: The interface that defines how the cleanup job is invoked and created.
AbstractStrategy() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
accept(File, String) - Method in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter: Tests if a specified file should be included in a file list.
accept(File, String) - Method in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter: Tests if a specified file should be included in a file list.
accept(File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter: Tests if a specified file should be included in a file list.
accept(File, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter: Tests if a specified file should be included in a file list.
actionmap - Static variable in class edu.isi.pegasus.common.util.Separator: Maps the action associated with a state and a character class.
actionmap2 - Static variable in class edu.isi.pegasus.common.util.Separator: Maps the action associated with a state and char class.
ACTUAL_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The constant to be passed to the accessor functions to get or set the actual end time for a job.
ACTUAL_START_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The constant to be passed to the accessor functions to get or set the actual start time for a job.
ADag - Class in edu.isi.pegasus.planner.classes: This class object contains the info about a Dag.
ADag() - Constructor for class edu.isi.pegasus.planner.classes.ADag: Initialises the class member variables.
ADag(DagInfo, Vector) - Constructor for class edu.isi.pegasus.planner.classes.ADag: Overloaded constructor.
ADAG - Class in edu.isi.pegasus.planner.dax: This class provides the Java API to create DAX files. The DAX XML SCHEMA is available at http://pegasus.isi.edu/schema/dax-3.3.xsd and documentation available at http://pegasus.isi.edu/wms/docs/schemas/dax-3.3/dax-3.3.html The DAX consists of 6 parts the first 4 are optional and the last is optional.
ADAG(String) - Constructor for class edu.isi.pegasus.planner.dax.ADAG: The Simple constructor for the DAX object
ADAG(String, int, int) - Constructor for class edu.isi.pegasus.planner.dax.ADAG: DAX Constructor
Adapter - Class in edu.isi.pegasus.planner.partitioner.graph: A Adapter class that converts the ADag to Graph and vice a versa.
Adapter() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.Adapter
add(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a string.
add(String, int) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add an int.
add(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a long.
add(String, float) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a float.
add(String, double) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a double.
add(String, String) - Method in interface edu.isi.pegasus.common.logging.Event: Add to the log message.
add(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Add to the log message with just a value.
add(String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Add to the log message for the event on the top.
add(String, String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Add to the log message.
add(String) - Method in class edu.isi.pegasus.common.logging.format.Simple: Add to the log message with just a value.
add(String, String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Add to the log message.
add(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Add to the log message with just a value.
add(String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Add to the log message.
add(String) - Method in class edu.isi.pegasus.common.logging.LogManager: Add to the internal log buffer message a value with the default key.
add(String, String) - Method in class edu.isi.pegasus.common.logging.LogManager: Add to the internal log buffer message a value with the key oassed The buffer is logged later when the log() method is called.
add(String, SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Adds a SiteInfo object to the container.
add(PoolConfig) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Adds all the sites in a controlled fashion, to the existing map containing information about the sites.
add(PoolConfig, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Adds all the sites in a controlled fashion, to the existing map containing information about the sites.
add(Job) - Method in class edu.isi.pegasus.planner.classes.ADag: This adds a new job to the ADAG object.
add(Job) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Adds a job to the aggregated job.
add(Invoke) - Method in class edu.isi.pegasus.planner.classes.Notifications: Adds a Invoke object correpsonding to a notification.
add(Object, Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag: Adds an object to the underlying bag corresponding to a particular key.
add(Map) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Adds ReplicaCatalogEntries into the store.
add(String, Collection) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Adds replica catalog entries into the store.
add(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Adds replica catalog entries into the store.
add - Variable in class edu.isi.pegasus.planner.client.TCClient
add(Object, Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag: Adds an object to the underlying bag corresponding to a particular key.
add(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: Adds an object to the underlying bag corresponding to a particular key.
add(String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: Adds to the internal XML representation.
add(String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer: Adds an XML fragment to the internal XML store
add(Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram: Add tasks into the occupation diagram.
add(Object, Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: Ignores the key and only adds the value .
add(boolean) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: Adds a boolean value to the bag
add(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: Adds an object to the underlying bag corresponding to a particular key.
add(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain: Adds to the end of the chain.
addAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add AbstractJob to the DAX
addAbstractJobs(List<AbstractJob>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add AbstractJobs to the DAX
addAlias(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Adds an alias site handle.
addAll(Notifications) - Method in class edu.isi.pegasus.planner.classes.Notifications: Adds all the notifications passed to the underlying container.
addAll(Invoke.WHEN, Collection<Invoke>) - Method in class edu.isi.pegasus.planner.classes.Notifications: Convenience method at add all the notifications corresponding to a particular event
addArgument(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a string argument to the argument List.
addArgument(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a file object to the argument List.
addArgument(File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a Array of File objects to the argument list.
addArgument(List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a List of File objects to the argument list.
addArgument(File[], String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a Array of File objects to the argument list.
addArgument(List<File>, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a List of File objects to the argument list.
addArgument(String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and value to the argument List.
addArgument(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and value to the argument List.
The argkey and argvalue are seperated by argdelimiter.
Example addArgument("-p","0","=") will result in the argument being added as -p=0
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and File value to the argument List.
The argkey and argvalue are seperated by space.
Example addArgument("-i",new File("f.a")) will result in the argument being added as -i <file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and File value to the argument List.
The argkey and argvalue are separated by the argdelimiter.
Example addArgument("-i",new File("f.a"),"=") will result in the argument being added as -i=<file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files)
will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files)
will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File[], String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimiter
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files,"=",",")
will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, List<File>, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimter
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files,"=",",")
will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Adds text to the arguments string
addArgument(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Adds filename to the arguments
addArgument(File) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Adds a file name to the argument string
addAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Adds an attribute to the set of attributes.
addAttribute(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Adds attributes to the existing attributes.
addAttribute(String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo: Adds an attribute.
addAttributes(List, List) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo: Add multiple attributes to the machine info element.
addBulk() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd: Adds multiple entries into the TC.
addChild(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Adds a child to end of the child list.
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource: Add child resources to a site catalog resource
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo: Add child resources to a site catalog resource
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo: Add child resources to a site catalog resource
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo: Add child resources to a site catalog resource
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo: Add child resources to a site catalog resource
addChildResource(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo: Add child resources to a site catalog resource
addCleanupJobs(Graph) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy: Adds cleanup jobs to the workflow.
addCleanupJobs(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Adds cleanup jobs to the workflow.
addCleanUpJobs(String, Set, Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Adds cleanup jobs for the workflow scheduled to a particular site a best first search strategy is implemented based on the depth of the job in the workflow
addCleanupJobs(ADag) - Method in class edu.isi.pegasus.planner.refiner.CleanupEngine: Adds the cleanup jobs in the workflow that removes the files staged to the remote site.
addCleanupNodesForWorkerPackage(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Adds cleanup nodes in the workflow for sites specified.
addCleanupPostScript(Job, List) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Adds a /bin/rm post constituentJob to kickstart that removes the files passed.
addConnection(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Adds a connection parameter
addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: It modifies the concrete dag passed in the constructor and adds the create random directory nodes to it at the root level.
addCreateDirectoryNodes(ADag) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Strategy: Modifies the workflow to add create directory nodes.
addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.Tentacles: Modifies the workflow to add create directory nodes.
addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.CreateDirectory: It modifies the concrete dag passed in the constructor and adds the create random directory nodes to it at the root level.
addCredentialType(String) - Method in class edu.isi.pegasus.planner.classes.Job: Looks at a URL to determine whether a credential should be associated with a job or not.
addCredentialType(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.planner.classes.Job: Adds a type of credential that will be required by a job.
addDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a DAG job to the DAX
addDAGs(List<DAG>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add multiple DAG jobs to the DAX
addDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a DAX job to the DAX
addDAXs(List<DAX>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add multiple DAX jobs to the DAX
addDefaultTCEntry(String, String, SysInfo, boolean, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
addDefaultTCEntryForPegasusWebsite(String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Returns a default TC entry for the pegasus site.
addDependantFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Adds a dependant file.
addDependency(String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a parent child dependency between two jobs,dax,dag
addDependency(AbstractJob, AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a parent child dependency between two jobs,dax,dag
addDependency(String, String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a parent child dependency with a dependency label
addDependency(AbstractJob, AbstractJob, String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a parent child dependency with a dependency label
addDestination(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Adds a destination URL for the transfer.
addDestination(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Adds a destination URL for the transfer.
addEdge(String, String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Adds an edge between two already existing nodes in the graph.
addEdge(String, String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Adds an edge between two already existing nodes in the graph.
addEdges(String, List) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
addEdges(String, List) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
addEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Adds a site catalog entry to the store.
addEntry(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Adds an entry into the store.
addEntry() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd: Adds a single entry into the TC.
addEntry(EnvEntry) - Method in class edu.isi.pegasus.planner.invocation.Environment: Adds an environment entry, effectively a key value pair, to the current environment settings.
addEntry(String, String) - Method in class edu.isi.pegasus.planner.invocation.Environment: Adds an environment entry, effectively a key value pair, to the current environment settings.
addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Netlogger: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Netlogger: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Simple: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Simple: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Adds the event that is to be associated with the log messages onto an internal stack
addEvent(String, Map<String, String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Adds the event that is to be associated with the log messages onto an internal stack
addExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Executable to the DAX
addExecutables(List<Executable>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Multiple Executable objects to the DAX
addFile(File) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a RC File object to the top of the DAX.
addFiles(List<File>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Files to the RC Section on top of the DAX
addFileServer(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Adds a FileServer that can access this directory.
addGridGateway(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Add a GridGateway to the site.
addIn(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node: add a data dependency edge to this task
addInputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job: Adds an input file to the underlying collection of input files associated with the job.
addInterSiteTXNodes(Job, Collection, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds the inter pool transfer nodes that are required for transferring the output files of the parents to the jobs execution site.
addInterSiteTXNodes(Job, Collection, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds the inter pool transfer nodes that are required for transferring the output files of the parents to the jobs execution site.
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add Notification to the job
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add notification to the job
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a Notification for this Workflow
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a Notification for this Workflow
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a Notification for this Executable same as addNotification
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a Notification for this Executable Same as add Notification
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation: Add a Notification for this Transformation
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Transformation: Add a Notification for this Transformation
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add Notifications to the job
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a List of Notifications for this Workflow
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a List of Notifications for this Executable Same as addNotifications
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation: Add a List of Notifications for this Transformation
addIPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor: Adds an input file that is to be transferred from the submit host via the Condor File Transfer Mechanism.
addItem(Object, String, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Helper function to assemble various pieces.
addJob(Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Adds jobs to the internal map of jobs that is maintained by the clusterer.
addJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Job to the DAX
addJob(Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Appends a job to the list of jobs.
addJob(int, Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Inserts a Job into a specific position of the job list.
addJob(Job) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Add a new job to the workflow being refined.
addJob(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Add a new job to the workflow being refined.
addJobs(List<Job>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add multiple Jobs to the DAX
addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add additional profile to a logical transformation .
addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add additional profile to a logical transformation .
addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add additional profile to a logical transformation .
addLFNProfile(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add additional profile to a logical transformation .
addLineToText(StringBuffer, String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility: Convenience method to add a line to the internal textual representation.
addList(String, List) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
addLogicalTr(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Adds a logical entry to the logicaltx table
addMachineInfo(MachineInfo) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific: Add a MachineInfo element.
addMap(String, Map) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a Map to the buffer.
addMeasurement(String, Measurement) - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements: Add a Measurement to the store.
addMetaData(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a Metadata entry for the Catalog object
addMetaData(MetaData) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a MetaData object for the Catalog object
addMetaData(List<MetaData>) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a List of MetaData objects to the Catalog entry object
addMsg(String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add an natural language message to the log message.
addNewJob(Job) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Adds a new job to the dag.
addNewRelation(String, String) - Method in class edu.isi.pegasus.planner.classes.ADag: Adds a new PCRelation pair to the Vector of PCRelation pairs.
addNewRelation(String, String, boolean) - Method in class edu.isi.pegasus.planner.classes.ADag: Adds a new PCRelation pair to the Vector of PCRelation pairs.
addNewRelation(PCRelation) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Adds a new PCRelation pair to the Vector of PCRelation pairs.
addNewRelation(String, String) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Adds a new PCRelation pair to the Vector of PCRelation pairs.
addNewRelation(String, String, boolean) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Adds a new PCRelation pair to the Vector of PCRelation pairs.
addNode(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Adds a node to the Graph.
addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Adds a node to the Graph.
addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Partition: Adds a node to the partition.
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Adds a Invoke object correpsonding to a notification.
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.ADag: Adds a Invoke object correpsonding to a notification.
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Adds a Invoke object correpsonding to a notification.
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.Job: Adds a Invoke object correpsonding to a notification.
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add Notification to the job
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add notification to the job
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a Notification for this Workflow
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a Notification for this Workflow
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a Notification for this Executable same as addInvoke
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a Notification for this Executable Same as addInvoke
addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Adds all the notifications passed to the underlying container.
addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.ADag: Adds all the notifications passed to the underlying container.
addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Adds all the notifications passed to the underlying container.
addNotifications(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.Job: Adds all the notifications specfied in the TransformationCatalogEntry to the underlying job notifications.
addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.Job: Adds all the notifications passed to the underlying container.
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add Notifications to the job
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add a List of Notifications for this Workflow
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable: Add a List of Notifications for this Executable.
addOPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor: Adds an output file that is to be transferred from the submit host via the Condor File Transfer Mechanism.
addOut(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node: add a data dependency edge from this task
addOutputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job: Adds an output file to the underlying collection of output files associated with the job.
addPair(String, String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a key,value pair The result looks like: key = (pairKey, pairValue)
addParent(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Adds a parent to end of the parent list.
addParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.Partition: Ends up assigning the parents to a particular node.
addPFN(PFN) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Adds a PFN specified in the DAX to the object
addPFN(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Add a PFN and it's attributes.
addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add additional profile to a physical transformation.
addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add additional profile to a physical transformation.
addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add additional profile to a physical transformation.
addPFNProfile(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add additional profile to a physical transformation.
addPFNs(List) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Add a PFN and it's attributes.
addPhysicalFile(String) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a pfn url to the Catalog
addPhysicalFile(String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a PFN url and a site id to the Catalog
addPhysicalFile(PFN) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a PFN object to the Catalog
addPhysicalFiles(List<PFN>) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a list of PFN objects to the Catalog
addPhysicalTr(String, String, TCType, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Adds a physical entry to the physicaltxtable
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds a profile.
addProfile(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Add a profile.
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Add a profile.
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Adds a profile.
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: Adds a profile.
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Adds a profile.
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: Adds a profile.
addProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add a lfn or pfn profile to the TC
addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Allows you to add one profile at a time to the transformation.
addProfile(Profile) - Method in class edu.isi.pegasus.planner.classes.Job: Adds a profile to the job object
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a profile to the job
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a profile to the job
addProfile(Profile) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a Profile object
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a profile to the catalog entry
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a profile to the catalog entry
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
addProfileDirectly(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds a profile directly to namespace bypassing any underlying namespace specific checks.
addProfileDirectly(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Add a profile.
addProfileDirectly(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Add a profile.
addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds multiple profiles.
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds multiple profiles.
addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Allows you to add one profile at a time to the transformation.
addProfiles(List) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Allows you to add multiple profiles to the transformation.
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Add a list of Profile objects
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a List of profile objects to this Catalog entry
addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.CatalogType: Add a Profile object to this Catalog entry
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.PFN
addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.PFN
addProfilesDirectly(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds multiple profiles .
addProfilesDirectly(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Adds multiple profiles to namespace bypassing any underlying namespace specific checks.
addProperties(Properties, Properties) - Static method in class edu.isi.pegasus.common.util.CommonProperties: Adds new properties to an existing set of properties while substituting variables.
addRecord(String, Space) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage: Add a Space record to the store.
addRegistrationFiles(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Adds a Collection of File transfer to the underlying collection of files to be registered.
addRelation(String, String) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds a new relation to the workflow being refiner.
addRelation(String, String, String, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds a new relation to the workflow.
addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain: Adds a new relation to the workflow.
addRelation(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds a new relation to the workflow being refiner.
addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds a new relation to the workflow.
addReplicaCatalog(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Add a Replica Catalog to the site.
addRoot(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Adds a single root node to the Graph.
addRoot(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Adds a single root node to the Graph.
addSetupNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Adds a setup node per execution site in the workflow that will stage the worker node executables to the workdirectory on the sites the workflow has been scheduled to.
addSetupNodesWithoutUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Adds only the stage worker nodes to the workflow.
addSetupNodesWithUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Adds untar nodes to the workflow, in addition to the stage worker nodes
addSetXBitJobs(Job, Job, Collection) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Adds the dirmanager to the workflow, that do a chmod on the files being staged.
addSetXBitJobs(Job, String, Collection, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
addSetXBitJobs(Job, String, Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
addSetXBitJobs(Job, String, Collection, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
addSource(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Adds a source URL for the transfer.
addSource(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Adds a source URL for the transfer.
addSpaceReading(Space, int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: Adds a space record for a particular event type.
addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Default behaviour to preserve backward compatibility when the stage in and symbolic link jobs were not separated.
addStageInXFERNodes(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Default behaviour to preserve backward compatibility when the stage in and symbolic link jobs were not separated.
addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageInXFERNodes(Job, Collection<FileTransfer>, String, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds the stageout transfer nodes, that stage data to an output site specified by the user.
addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Adds the stageout transfer nodes, that stage data to an output site specified by the user.
addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Adds the stageout transfer nodes, that stage data to an output site specified by the user.
addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds the stageout transfer nodes, that stage data to an output site specified by the user.
addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Adds the stageout transfer nodes, that stage data to an output site specified by the user.
addStatCall(StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Appends a stat to the list of stats.
addStatCall(int, StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Inserts a StatCall into a specific position of the stat list.
addSubExpression(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite: Adds a sub expression to a string buffer
addSubExpression(StringBuffer, String, Integer) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite: Adds a sub expression to a string buffer
addSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Adds a system information entry into the TC.
addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add an single entry into the transformation catalog.
addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add an single entry into the transformation catalog.
addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add an single entry into the transformation catalog.
addTime(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
addTimeStamp() - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a timestamp to the message.
addToFile(File, OutputStream) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Adds contents to an output stream.
addToForwardOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Parses the argument in form of option=[value] and adds to the options that are to be passed ahead to pegasus-run.
addToNonStandardJavaOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Adds to the Set of non standard JAVA options that need to be passed to the JVM.
addToStagingSitesMappings(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Adds to the staging sites
addToStagingSitesMappings(String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Adds to the staging sites
addTransfer(Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Adds a a collection of FileTransfer objects to the appropriate TransferContainer.
addTransfer(FileTransfer, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Adds a file transfer to the appropriate TransferContainer.
addTransfer(FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Adds a file transfer to the underlying collection.
addTransfer(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Adds a file transfer to the underlying collection.
addTransfer(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: Adds a file transfer to the appropriate TransferChain.
addTransferNodes(ReplicaCatalogBridge, ReplicaCatalog) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Adds the transfer nodes to the workflow.
addTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Transformation to the DAX
addTransformations(List<Transformation>) - Method in class edu.isi.pegasus.planner.dax.ADAG: Add Multiple Transformation to the DAX
addVector(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine: Adds elements (PegasusFile type) in a Vector to another Vector and returns the new Vector.
addWQ(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Add a string.
after(int, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
AggregatedJob - Class in edu.isi.pegasus.planner.classes: This class holds all the specifics of an aggregated job.
AggregatedJob() - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob: The default constructor.
AggregatedJob(int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob: The overloaded constructor.
AggregatedJob(Job, int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob: The overloaded constructor.
aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Returns the arguments with which the AggregatedJob needs to be invoked with.
aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Returns the arguments with which the AggregatedJob needs to be invoked with.
aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Returns the arguments with which the AggregatedJob needs to be invoked with.
Aggregator - Interface in edu.isi.pegasus.planner.namespace.aggregator: An internal interface, that allows us to perform aggregation functions on profiles during merging of profiles.
aggregator(String) - Method in class edu.isi.pegasus.planner.namespace.Globus: Returns the aggregator to be used for the profile key while merging.
AIX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
Algorithm - Class in edu.isi.pegasus.planner.selector.site.heft: The HEFT based site selector.
Algorithm(PegasusBag) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The default constructor.
All - Class in edu.isi.pegasus.planner.catalog.transformation.mapper: This implementation of the mapper generates maps for sites with installed as well as stageable transformations.
All(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.All: The private constructor.
ALL_POST_SCRIPT_SCOPE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The postscript mode in which post scripts are added only for all jobs.
ALL_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState: The constant to denote that all transfers are to be exectuted remotely
ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The constant to apply to all sites.
ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.TPT: The constant to apply to all sites.
ALL_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT: The property name to get the sites for which all transfers need to be TPT.
ALL_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState: The constant to denote that all transfers are to be executed on the remote site.
ALL_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT: The property name to get the sites for which all TPT transfers need to be executed on the remote site.
ALL_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState: The constant to denote that all transfers are to be third party.
ALL_TRANSFER_PRIORITY_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties: Default properties that applies priorities to all kinds of transfer jobs.
ALL_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The property name to get the sites for which all transfers need to be executed remotely.
AMD64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
ancestors - Variable in class edu.isi.pegasus.planner.provisioner.Node
ancET - Variable in class edu.isi.pegasus.planner.provisioner.Node
app_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
app_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
app_space - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
app_space - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
append(StringBuffer, String, Object, String) - Method in class edu.isi.pegasus.planner.classes.Job: Appends a key value mapping to the StringBuffer.
append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Appends a key=value pair to the StringBuffer.
append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Appends a key=value pair to the StringBuffer.
append(StringBuffer, String, int) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Appends a key=value pair to the StringBuffer.
append(StringBuffer, String, String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
appendArrayList(ArrayList, ArrayList) - Method in class edu.isi.pegasus.planner.refiner.Engine: It appends the source list at the end of the destination list.
appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Appends an xml attribute to the xml feed.
appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Appends an xml attribute to the xml feed.
APPENDER - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: Appends a property to the StringBuffer, in the java command line format.
appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Appends a property to the StringBuffer, in the java command line format.
appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Appends a property to the StringBuffer, in the java command line format.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Boot: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CPU: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Data: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.File: Appends a piece of text to the existing text.
appendValue(String) - Method in interface edu.isi.pegasus.planner.invocation.HasText: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Ignore: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Stamp: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Uname: Appends a piece of text to the existing text.
appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir: Appends a piece of text to the existing text.
apply(Job) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle: Apply a style to a job.
apply(AggregatedJob) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle: Apply a style to an AggregatedJob
apply(AggregatedJob) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Apply a style to an AggregatedJob
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor: Applies the condor style to the job.
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC: Applies the CondorC style to the job.
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG: Applies the globus style to the job.
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN: Applies the style to the job to be run in a condor glide in environment.
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite: Applies the gLite style to the job.
applyCredentialsForLocalExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Examines the credential requirements for a job and adds appropiate transfer and environment directives for the credentials to be picked up for the local job
applyCredentialsForRemoteExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Examines the credential requirements for a job and adds appropiate transfer and environment directives for the credentials to be staged and picked up by the job.
applyJobPriorities(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Adds job priorities to the jobs in the workflow on the basis of the levels in the traversal order given by the iterator.
applyPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Applies priorities to the transfer jobs if a priority is specified in the properties file.
applyPriority(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Applies priorities to the transfer jobs if a priority is specified in the properties file.
applyStyle(Job, PrintWriter) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Applies a submit file style to the job, according to the fact whether the job has to be submitted directly to condor or to a remote jobmanager via CondorG and GRAM.
Arch - Class in edu.isi.pegasus.planner.catalog.transformation.classes
Arch(String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
arch - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Architecture of the system.
ARCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord: token value for the reserved word "arch".
ARCH_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the architecture type of the remote machines to which the jobmanager talks to.
Architecture - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
Architecture() - Constructor for class edu.isi.pegasus.planner.invocation.Architecture: Default c'tor: Construct a hollow shell and allow further information to be added later.
ARCHMODE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname: The archmode attribute for the uname
ARG_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
ArgEntry - Class in edu.isi.pegasus.planner.invocation: This class carries an argument vector entry for the argument vector.
ArgEntry() - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry: Default c'tor: Construct a hollow shell and allow further information to be added later.
ArgEntry(int) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry: C'tor: Prepares a given key for accepting a value later on.
ArgEntry(int, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry: C'tor: Fully initializes the class
argsmap - Variable in class edu.isi.pegasus.planner.client.TCClient
ArgString - Class in edu.isi.pegasus.planner.invocation: This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
ArgString() - Constructor for class edu.isi.pegasus.planner.invocation.ArgString: Default c'tor: Construct a hollow shell and allow further information to be added later.
ArgString(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString: Constructs an applications without arguments.
ArgString(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString: Constructs an applications with arguments.
Arguments - Class in edu.isi.pegasus.planner.invocation: This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
Arguments() - Constructor for class edu.isi.pegasus.planner.invocation.Arguments: Default c'tor: Construct a hollow shell and allow further information to be added later.
Arguments(String) - Constructor for class edu.isi.pegasus.planner.invocation.Arguments: Constructs an applications without arguments.
ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for task arguments.
ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the key that denotes the arguments of the job.
ArgVector - Class in edu.isi.pegasus.planner.invocation: This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
ArgVector() - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector: Default c'tor: Construct a hollow shell and allow further information to be added later.
ArgVector(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector: Constructs an applications without arguments.
assignDefaultJobPriorities() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whether we assign job priorities or not to the jobs Referred to by the "pegasus.job.priority.assign" property.
assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Dagman: Assimilate the profiles in the namespace in a controlled manner.
assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Assimilate the profiles in the namespace in a controlled manner.
assimilateJobs() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Puts the jobs in the abstract workflow into the job that is index by the logical name of the jobs.
associate(String, String) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Associates a VDS property with the new pegasus property.
associate(Partition, Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Maps the partition to the corresponding clustered job.
associate(POSTScript) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory: Associates a shortname with the classname.
associate(String, String) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory: Associates a shortname with the classname.
associateCredentials(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Associates credentials with the job corresponding to the files that are being transferred.
attributeNotSupported(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: This is called when an attribute is encountered for an element that is valid in the schema context but not supported right now.
attributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Slurps all attributes from related to a mapping into a map.
AuthenticateRequest - Class in edu.isi.pegasus.planner.classes: The object that describes the authenticate request.
AuthenticateRequest() - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest: Default Constructor.
AuthenticateRequest(char, String, String) - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest: Overloaded Constructor.
authenticationSet() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the authenticate option for the planner.
AVERAGE_BANDWIDTH - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The average bandwidth between the sites.
AVERAGE_DATA_SIZE_BETWEEN_JOBS - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The average data that is transferred in between 2 jobs in the workflow.
avg_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Avg_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
avg_bandwidth_range1 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Avg_Bandwidth_range1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
avg_bandwidth_range2 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Avg_Bandwidth_range2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
avg_bandwidth_range3 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Avg_Bandwidth_range3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
avg_bandwidth_range4 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Avg_Bandwidth_range4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
AVG_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
AVG_BW_RANGE1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
AVG_BW_RANGE2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
AVG_BW_RANGE3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
AVG_BW_RANGE4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
AVG_COMPUTE_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The constant to be passed to the accessor functions to get or set the average compute time for the node.

B

Bag - Interface in edu.isi.pegasus.planner.partitioner.graph: An interface to define a BAG of objects.
balance(int, boolean) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram: Run Task redistribution phase of BTS algorithm
BASE_BUILD_DIRECTORY_URL - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The base directory URL for the builds.
BASE_URL - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
BATCH_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: The suffix for the property that if set, specifies the size of the chunk in which the implementations handle multiple queries.
beginWorkflowRefinementStep(Refiner, String, boolean) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
beginWorkflowRefinementStep(Refiner, String, boolean) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
bestFitBinPack(List<Job>, double) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Perform best fit bin packing.
BFS - Class in edu.isi.pegasus.planner.partitioner: This does a modified breadth first search of the graph to identify the levels.
BFS(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.BFS: The overloaded constructor.
BLACK_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Boolean - Class in edu.isi.pegasus.common.util: This class converts a boolean property specification (string) in various representations into a booelan value.
Boolean() - Constructor for class edu.isi.pegasus.common.util.Boolean
booleanToInt(boolean) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Returns boolean as an integer
Boot - Class in edu.isi.pegasus.planner.invocation: The boot element.
Boot() - Constructor for class edu.isi.pegasus.planner.invocation.Boot: The default constructor
Boot(String) - Constructor for class edu.isi.pegasus.planner.invocation.Boot: Constructs a piece of data.
bottomNode - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
Braindump - Class in edu.isi.pegasus.planner.code.generator: Braindump file code generator that generates a Braindump file for the executable workflow in the submit directory.
Braindump() - Constructor for class edu.isi.pegasus.planner.code.generator.Braindump
BRAINDUMP_FILE - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The basename of the braindump file.
BTS() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
buf - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
BUILD_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The classad key for the pegasus build.
BUILD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The Key for the pegasus build.
buildAncestors() - Method in class edu.isi.pegasus.planner.provisioner.Node: build the list of ancestor tasks
buildDescendants() - Method in class edu.isi.pegasus.planner.provisioner.Node: build the list of descendant tasks
buildState() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Builds up the remote transfers state for all the sites.
buildState(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Adds to the existing state table, state information for a particular type of transfers.
buildState() - Method in class edu.isi.pegasus.planner.transfer.TPT: Builds up the third party state for all the sites.
buildState(int) - Method in class edu.isi.pegasus.planner.transfer.TPT: Adds to the existing state table, state information for a particular type of transfers.
bulk - Variable in class edu.isi.pegasus.planner.client.TCClient
Bundle - Class in edu.isi.pegasus.planner.transfer.refiner: An extension of the default refiner, that allows the user to specify the number of transfer nodes per execution site for stagein and stageout.
Bundle(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle: The overloaded constructor.
Bundle.BundleValue - Class in edu.isi.pegasus.planner.transfer.refiner
Bundle.BundleValue() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: The default constructor.
Bundle.PoolTransfer - Class in edu.isi.pegasus.planner.transfer.refiner: A container to store the transfers that need to be done on a single pool.
Bundle.PoolTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: The default constructor.
Bundle.PoolTransfer(String, boolean, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Convenience constructor.
Bundle.TransferContainer - Class in edu.isi.pegasus.planner.transfer.refiner: A container class for storing the name of the transfer job, the list of file transfers that the job is responsible for.
Bundle.TransferContainer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The default constructor.
BUNDLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that if set, determines the number of super jobs that are made corresponding to a logical transformation and an execution pool.
BUNDLE_LOCAL_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the local stagein transfer node.
BUNDLE_LOCAL_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the local stagein transfer node.
BUNDLE_REMOTE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the remote stagein transfer node.
BUNDLE_REMOTE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the remote stagein transfer node.
BUNDLE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the stagein transfer node.
BUNDLE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the stageout transfer node.

C

c_action - Static variable in class edu.isi.pegasus.common.util.ProfileParser: There are six identified actions.
c_action - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Contains the actions to perform upon each state transition including transition into self state.
c_cdone - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
c_count - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
c_error - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: This message is sent whenever one of the member function is executed which relies on an established database context.
c_expression - Static variable in class edu.isi.pegasus.common.util.Currently: Store the regular expressions necessary to parse ISO timestamps.
c_final - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Provides the final states and associated messages.
c_instance - Static variable in class edu.isi.pegasus.common.util.Version: Instance variable keeping track of the Singleton.
c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
c_pattern - Static variable in class edu.isi.pegasus.common.util.Currently: Stores compiled patterns at first use, quasi-Singleton.
c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Prefix for the property subset to use with this catalog.
c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.SiteCatalog: Prefix for the property subset to use with this catalog.
c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog: Prefix for the property subset to use with this catalog.
c_prefix - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX: Prefix for the property subset to use with this catalog.
c_state - Static variable in class edu.isi.pegasus.common.util.ProfileParser: Table to contain the state transition diagram for the parser.
c_state - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Contains the state transition tables.
c_terminate - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Suffix to be applied for cache file generation.
CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Suffix to be applied for cache file generation.
CACHE_READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The name of the key that disables writing back to the cache file.
CACHE_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The name of the Replica Catalog Implementer that serves as the source for cache files.
CACHE_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The name of the source key for Replica Catalog Implementer that serves as cache
cAction - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser: There are five identified actions.
calculateAverageComputeTime(Job) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Returns the average compute time in seconds for a job.
calculateEstimatedStartAndFinishTime(GraphNode, String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Estimates the start and finish time of a job on a site.
calculateSlotSize() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
calendar - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
Callback - Interface in edu.isi.pegasus.planner.parser.dax: This interfaces defines the callback calls from DAX parsing.
Callback - Interface in edu.isi.pegasus.planner.parser.pdax: This interfaces defines the callback calls from PDAX parsing.
Callback - Interface in edu.isi.pegasus.planner.partitioner: This interface defines the callback calls from the partitioners.
Callback - Interface in edu.isi.pegasus.planner.visualize: This callback interface has methods to handle the data sections for stdout, stderr and stdin.
canSetXBit() - Method in interface edu.isi.pegasus.planner.code.GridStart: Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid site.
canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
cascadeDeletionUpwards(Graph, List<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: Cascade the deletion of the jobs upwards in the workflow.
Catalog - Interface in edu.isi.pegasus.planner.catalog: This interface create a common ancestor for all cataloging interfaces.
CATALOG_URL - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
CatalogEntry - Interface in edu.isi.pegasus.planner.catalog.classes: This interface create a common ancestor for all catalog entries.
CatalogException - Exception in edu.isi.pegasus.planner.catalog: Class to notify of failures.
CatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
CatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException: Constructs a CatalogException with the specified detailed message.
CatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException: Constructs a CatalogException with the specified detailed message and a cause.
CatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException: Constructs a CatalogException with the specified just a cause.
CatalogType - Class in edu.isi.pegasus.planner.dax: Abstract Type for RC and TC Sections of the DAX.
CatalogType() - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
CatalogType(CatalogType) - Constructor for class edu.isi.pegasus.planner.dax.CatalogType: Copy Constructor
CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The name of the key that determines the category to which the job belongs to.
categoryRelatedKey(String) - Static method in class edu.isi.pegasus.planner.namespace.Dagman: Determines whether a key is category related or not.
cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler: Callback when the opening tag was parsed.
cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler: Callback when the opening tag was parsed.
cb_done() - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
cb_done() - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler: Callback when the parsing of the document is done.
cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler: Callback for the filename from section 1 filenames.
cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler: Callback for the job from section 2 jobs.
cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler: Callback for child and parent relationships from section 3.
cbCompoundTransformation(CompoundTransformation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when a compound transformation is encountered in the DAX from Section 3: that lists Transformations that Aggregate executables and Files
cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when a compound transformation is encountered in the DAX
cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback when a compound transformation is encountered in the DAX
cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when a compound transformation is encountered in the DAX
cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback when a compound transformation is encountered in the DAX
cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when a compound transformation is encountered in the DAX
cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when the opening tag was parsed.
cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback: Callback when the opening tag was parsed.
cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Callback when the opening tag was parsed.
cbDone() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when the parsing of the document is done.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when the parsing of the document is done.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback to signal that traversal of the DAX is complete.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph: Callback to signal that traversal of the DAX is complete.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when the parsing of the document is done.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback to signal that traversal of the DAX is complete.
cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when the parsing of the document is done.
cbDone() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback: Callback when the parsing of the document is done.
cbDone() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Callback when the parsing of the document is done.
cbDone() - Method in interface edu.isi.pegasus.planner.partitioner.Callback: Callback for the partitioner to signal that it is done with the processing.
cbDone() - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback: Callback for the partitioner to signal that it is done with the processing.
cbDone() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Callback for the partitioner to signal that it is done with the processing.
cbExecutable(TransformationCatalogEntry) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when a transformation catalog entry is encountered in the DAX from Section 2: Executables that list entries in a Transformaton Catalog
cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when a transformation catalog entry is encountered in the DAX
cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback when a transformation catalog entry is encountered in the DAX
cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when a transformation catalog entry is encountered in the DAX
cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback when a transformation catalog entry is encountered in the DAX
cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when a transformation catalog entry is encountered in the DAX
cbFile(ReplicaLocation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when a replica catalog entry is encountered in the DAX from Section 1: Files that lists entries in a Replica Catalog
cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when a replica catalog entry is encountered in the DAX
cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback when a replica catalog entry is encountered in the DAX
cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when a replica catalog entry is encountered in the DAX
cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback when a replica catalog entry is encountered in the DAX
cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when a replica catalog entry is encountered in the DAX
cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback function for when stat information for an input file is encountered.
cbInputFile(String, StatInfo) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback function for when stat information for an input file is encountered
cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback function for when stat information for an input file is encountered.
cbInputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback function for when stat information for an input file is encountered.
cbInvocationEnd() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback signalling that an invocation record has been parsed.
cbInvocationEnd() - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback signalling that an invocation record has been parsed.
cbInvocationEnd() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback signalling that an invocation record has been parsed.
cbInvocationEnd() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback signalling that an invocation record has been parsed.
cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback for the starting of an invocation record.
cbInvocationStart(String, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback for the starting of an invocation record.
cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback for the starting of an invocation record.
cbInvocationStart(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: Callback for the starting of an invocation record.
cbJob(Job) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback for the job from section 4: Job's, DAX's or Dag's that list a JOB or DAX or DAG .
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback for the job from section 2 jobs.
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: This constructs a graph node for the job and ends up storing it in the internal map.
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph: This constructs a graph node for the job and ends up storing it in the internal map.
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback for the job from section 2 jobs.
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: This constructs a graph node for the job and ends up storing it in the internal map.
cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback for the job from section 2 jobs.
cbMachine(Machine) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback to pass the machine information on which the job is executed.
cbMachine(Machine) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback to pass the machine information on which the job is executed.
cbMachine(Machine) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback to pass the machine information on which the job is executed.
cbMachine(Machine) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback to pass the machine information on which the job is executed.
cbMetadata(Map) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback for the metadata retrieved from the kickstart record.
cbMetadata(Map) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback for the metadata retrieved from the kickstart record.
cbMetadata(Map) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback for the metadata retrieved from the kickstart record.
cbMetadata(Map) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback for the metadata retrieved from the kickstart record.
cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback function for when stat information for an output file is encountered.
cbOutputFile(String, StatInfo) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback function for when stat information for an output file is encountered
cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback function for when stat information for an output file is encountered.
cbOutputFile(String, StatInfo) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback function for when stat information for an output file is encountered.
cbParents(String, List<PCRelation>) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback for child and parent relationships from Section 5: Dependencies that lists Parent Child relationships (can be empty)
cbParents(String, List<PCRelation>) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback for child and parentID relationships from section 3.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: This updates the internal graph nodes of child with references to it's parents referred to by the list of parents passed.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback for child and parent relationships from section 3.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: This updates the internal graph nodes of child with references to it's parents referred to by the list of parents passed.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback for child and parent relationships from section 3.
cbParents(String, List) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback: Callback for child and parent relationships from section 3.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Callback for child and parent relationships from section 3.
cbParents(String, List) - Method in interface edu.isi.pegasus.planner.partitioner.Callback: Callback for when a partitioner determines the relations between partitions that it has previously constructed.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback: Callback for when a partitioner determines the relations between partitions that it has previously constructed.
cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Callback for when a partitioner determines the relations between partitions that it has previously constructed.
cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback: Callback for the partition .
cbPartition(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Callback for the partition .
cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.partitioner.Callback: Callback for when a partitioner determines that partition has been constructed.
cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback: Callback for when a partitioner determines that partition has been constructed.
cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Callback for when a partitioner determines that partition has been constructed.
cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
cbStdERR(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback function for the data section of stderr.
cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
cbStdERR(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
cbStdIN(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback function for the data section of stdin.
cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
cbStdIN(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback
cbStdOut(List, String) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback function for the data section of stdout.
cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
cbStdOut(List, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
cbWfInvoke(Invoke) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Callback when a invoke is encountered in the DAX from the top level inside adag tag.
cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Callback when a invoke entry is encountered in the top level inside the adag element in DAX.
cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
Chain - Class in edu.isi.pegasus.planner.transfer.refiner: This transfer refiner builds upon the Default Refiner.
Chain(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain: The overloaded constructor.
Chain.SiteTransfer - Class in edu.isi.pegasus.planner.transfer.refiner: A container to manage the transfer jobs that are needed to be done on a single site.
Chain.SiteTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: The default constructor.
Chain.SiteTransfer(String, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: Convenience constructor.
Chain.TransferChain - Class in edu.isi.pegasus.planner.transfer.refiner: A shallow container class, that contains the list of the names of the transfer jobs and can return the last job in the list.
Chain.TransferChain() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain: The default constructor.
CHAIN_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the number of chains of stagein nodes that are to be created per site.
CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key that triggers the kickstart to change directory before launching an executable instead of launching the executable from the directory where kickstart is being run.
CHANGE_XBIT_TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The logical name of the transformation that creates directories on the remote execution pools.
characters(char[], int, int) - Method in class edu.isi.pegasus.planner.client.DAXValidator
characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: This method is the callback function for characters in an element.
characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.Parser: This is used to store the character data that is in xml.
CHECK_DB_EXISTS_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: MySQL statement for checking if DB exists
checkAndSetProperty(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration: Checks for a property, if it does not exist then sets the property to the value passed
checkAndTransferIrodsEnvFile(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Deprecated.
checkAndTransferProxy(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Deprecated.
checkAndTransferProxy(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Determines if there is a need to transfer proxy for the transfer job or not.
checkCompatibility(Implementation) - Method in class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner: Checks whether the implementation loaded is compatible with the refiner.
checkFile(String) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer: Reads the contents of the specified file, and returns with the remote exit code contained in the job chain.
checkID(String) - Static method in class edu.isi.pegasus.planner.dax.AbstractJob: Copy Constructor
checkIfDatabaseExists(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Checks if the given database exists
checkIn() - Method in class edu.isi.pegasus.planner.provisioner.Node: check whether all parent tasks are finished.
checkIntegrity() - Method in class edu.isi.pegasus.planner.provisioner.Node: check all child task's start time is scheduled after the finishtime of this task
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor: Additional method to handle the Condor namespace with convenience mappings.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: This checks whether the key passed by the user is valid in the current namespace or not.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV: This checks whether the key passed by the user is valid in the current namespace or not.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus: Additional method to handle the globus namespace with convenience mappings.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints: This checks whether the key passed by the user is valid in the current namespace or not.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: This checks the whether a key value pair specified is valid in the current namespace or not, and whether it clashes with other key value pairs that might have been set by Pegasus internally.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: This checks whether the key passed by the user is valid in the current namespace or not.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector: This checks whether the key passed by the user is valid in the current namespace or not.
checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat: This checks whether the key passed by the user is valid in the current namespace or not.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Condor: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor: This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.ENV: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.ENV: It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Globus: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Hints: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace: It puts in the namespaces keys from another namespace instance.
checkKeyInNS(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.namespace.Namespace: It puts in the namespace specific information from the Transformation Catalog into the namespace.
checkKeyInNS(Profile) - Method in class edu.isi.pegasus.planner.namespace.Namespace: It takes in a Profiles object and puts them into the namespace after checking if the namespace in the Profile object is same as the namepsace implementation.
checkKeyInNS(List) - Method in class edu.isi.pegasus.planner.namespace.Namespace: It takes in a list of profiles and puts them into the namespace after checking if they are valid or not.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Selector: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Selector: It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Stat: It puts in the namespace specific information specified in the properties file into the namespace.
checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Stat: It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
checkLfnPfnMap(long, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Checks if a lfn,pfn exist in the map.
checkProfile(String, String, String, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Checks if a given profile exists
child - Variable in class edu.isi.pegasus.planner.classes.PCRelation: the child making up the parent child relationship pair in a dag
CHILD_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The atrribute key for child job id.
CHILD_TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The atrribute key for child task id.
childrenRepresentation() - Method in class edu.isi.pegasus.planner.partitioner.Topological: Returns a map that is index by GraphNode ID's and each value is the list of ID's of children of that GraphNode.
CHMOD_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a chmod job that sets the xbit on the remote end.
ClassADSGenerator - Class in edu.isi.pegasus.planner.code.generator.condor: A helper class, that generates Pegasus specific classads for the jobs.
ClassADSGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
classname - Variable in class edu.isi.pegasus.planner.client.TCClient
CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The basename of the class that is implmenting this.
CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The basename of the class that is implmenting this.
CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The basename of the class that is implmenting this.
Cleanup - Class in edu.isi.pegasus.planner.refiner.cleanup: Use's RM to do removal of the files on the remote sites.
Cleanup() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The default constructor.
CLEANUP_DAG_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The prefix that is attached to the name of the dag for which the cleanup Dag is being generated, to generate the name of the cleanup Dag.
CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.client.CPlanner: The basename of the directory that contains the submit files for the cleanup DAG that for the concrete dag generated for the workflow.
CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.refiner.MainEngine: The basename of the directory that contains the submit files for the cleanup DAG that for the concrete dag generated for the workflow.
CLEANUP_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a cleanup job, that removes the files that from the remote working directories of the remote sites.
CLEANUP_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The prefix for CLEANUP_JOB ID i.e prefix+the parent compute_job ID becomes ID of the cleanup job.
CLEANUP_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Constant suffix for the names of the deployment nodes.
CleanupEngine - Class in edu.isi.pegasus.planner.refiner: The refiner that results in the creation of cleanup jobs within the workflow.
CleanupEngine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CleanupEngine: The overloaded constructor.
CleanupFactory - Class in edu.isi.pegasus.planner.refiner.cleanup: A factory class to load the appropriate type of Code Generator.
CleanupFactory() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
CleanupFactoryException - Exception in edu.isi.pegasus.planner.refiner.cleanup: Class to notify of failures while instantiating Cleanup Strategy and Implementation classes.
CleanupFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException: Constructs a CleanupFactoryException with no detail message.
CleanupFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException: Constructs a CleanupFactoryException with the specified detailed message.
CleanupFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException: Constructs a CleanupFactoryException with the specified detailed message and a cause.
CleanupFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException: Constructs a CleanupFactoryException with the specified detailed message and a cause.
CleanupImplementation - Interface in edu.isi.pegasus.planner.refiner.cleanup: The interface that defines how the cleanup job is invoked and created.
cleanupJob(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Returns boolean indicating whether the job is a cleanup job or not.
cleanupJob(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Returns boolean indicating whether the job is a cleanup job or not.
CleanupStrategy - Interface in edu.isi.pegasus.planner.refiner.cleanup: The interface that defines how the cleanup job is invoked and created.
clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Removes everything.
clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Removes everything from the catalogs.
clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Removes everything.
clear() - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Removes everything.
clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Clears all the entries in the store.
clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Deletes the entire transformation catalog.
clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Deletes the entire transformation catalog.
clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Deletes the entire transformation catalog.
clear() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Deletes the entire transformation catalog.
clear() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: Clears the internal state.
clear() - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer: Clears the internal state.
clearAliases() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Clears the aliases associates with the replica catalog.
clearJobs() - Method in class edu.isi.pegasus.planner.classes.ADag: Removes all the jobs from the workflow, and all the edges between the workflows.
Client - Class in edu.isi.pegasus.planner.catalog.transformation.client
Client() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.Client
clone() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Return a copy of this Sysinfo object
clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: creates a new instance of this object and returns you it.
clone() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest: Returns a clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.DAGJob: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.DAXJob: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.Job: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.NameValue: Returns a copy of this object
clone() - Method in class edu.isi.pegasus.planner.classes.Notifications: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.PCRelation: returns a new copy of the Object
clone() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns a copy of the existing data object.
clone() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.Profile: Returns a copy of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.classes.TransferJob: Returns a new copy of the Object.
clone() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.dax.File: Return a clone of this File
clone() - Method in class edu.isi.pegasus.planner.dax.Invoke: Create a copy of this Invoke object
clone() - Method in class edu.isi.pegasus.planner.dax.MetaData: Create a copy of this Metdata Object
clone() - Method in class edu.isi.pegasus.planner.dax.Parent
clone() - Method in class edu.isi.pegasus.planner.dax.Profile: Create a copy of this Profile
clone() - Method in class edu.isi.pegasus.planner.namespace.Condor: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.namespace.Dagman: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.namespace.ENV: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.namespace.Globus: Returns a copy of the current namespace object
clone() - Method in class edu.isi.pegasus.planner.namespace.Hints: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.namespace.Namespace: Returns the clone of the object.
clone() - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Returns a copy of the current namespace object
clone() - Method in class edu.isi.pegasus.planner.namespace.Selector: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.namespace.Stat: Returns a copy of the current namespace object.
clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns a copy of the object.
clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns a copy of the object.
clone() - Method in class edu.isi.pegasus.planner.partitioner.Partition: Returns a copy of the object
clone() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue: Returns a copy of this object.
clone() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the clone of the object.
cloneSet(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Clones a Set.
close() - Method in class edu.isi.pegasus.common.util.StreamGobbler: Closes the underneath input and output stream that were opened.
close() - Method in class edu.isi.pegasus.common.util.XMLWriter
close() - Method in interface edu.isi.pegasus.planner.catalog.Catalog: Explicitely free resources before the garbage collection hits.
close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Explicitely free resources before the garbage collection hits.
close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Explicitely free resources before the garbage collection hits.
close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: This operation will dump the in-memory representation back onto disk.
close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Close the connection to back end file.
close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Closes the connection.
close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Close the connection to backend file.
close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Close the connection to backend file.
close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Closes the connection to the back end.
close() - Method in class edu.isi.pegasus.planner.catalog.work.Database: Explicitely free resources before the garbage collection hits.
close() - Method in class edu.isi.pegasus.planner.client.RCClient: Frees resources taken by the instance of the replica catalog.
close() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter: Close the write handle to the file that is written.
close() - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter: Close the xml file that is written.
close() - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Explicitely free resources before the garbage collection hits.
CLOSE_COMMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
CLOSE_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
CLOSE_EMPTY_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
CloseBrace - Class in edu.isi.pegasus.planner.parser.tokens: Class to convey a closed brace, no token value necessary.
CloseBrace() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseBrace
closeConnection() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: To close the connection to replica services.
closeElement() - Method in class edu.isi.pegasus.common.util.XMLWriter: Close open elements start tag.
CloseParanthesis - Class in edu.isi.pegasus.planner.parser.tokens: Class to convey a closed paranthesis, no token value necessary.
CloseParanthesis() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseParanthesis: Default Constructor
cluster - Variable in class edu.isi.pegasus.planner.provisioner.Node
cluster(ADag) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser: Clusters the jobs in the workflow.
cluster(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser: Clusters the jobs in the workflow.
Cluster - Class in edu.isi.pegasus.planner.transfer.refiner: A cluster refiner that builds upon the Bundle Refiner.
Cluster(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Cluster: The overloaded constructor.
CLUSTER_LOCAL_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the cluster parameter for the local stagein transfer node.
CLUSTER_LOCAL_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the cluster parameter for the local stagein transfer node.
CLUSTER_REMOTE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the clustering parameter for the stagein transfer node.
CLUSTER_REMOTE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the bundling parameter for the remote stagein transfer node.
CLUSTER_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the clustering parameter for the stagein transfer node.
CLUSTER_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the clustering parameter for the stageout transfer node.
CLUSTERED_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The prefix that is assigned to the jobname of the collapsed jobs to get the jobname for the fat job.
clusteredJob(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the job corresponding to a partition.
clusteredJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the job corresponding to a partition.
Clusterer - Interface in edu.isi.pegasus.planner.cluster: The clustering API, that constructs clusters of jobs out of a single partition.
ClustererCallback - Class in edu.isi.pegasus.planner.partitioner: A Callback implementation that passes the partitions detected during the partitioning of the worflow to a Clusterer for clustering.
ClustererCallback() - Constructor for class edu.isi.pegasus.planner.partitioner.ClustererCallback: The default constructor.
ClustererException - Exception in edu.isi.pegasus.planner.cluster: The baseclass of the exception that is thrown by all Clusterers.
ClustererException() - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException: Constructs a ClustererException with no detail message.
ClustererException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException: Constructs a ClustererException with the specified detailed message.
ClustererException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException: Constructs a ClustererException with the specified detailed message and a cause.
ClustererException(Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException: Constructs a ClustererException with the specified just a cause.
ClustererFactory - Class in edu.isi.pegasus.planner.cluster: A factory class to load the appropriate Partitioner, and Clusterer Callback for clustering.
ClustererFactory() - Constructor for class edu.isi.pegasus.planner.cluster.ClustererFactory
ClustererFactoryException - Exception in edu.isi.pegasus.planner.cluster: Class to notify of failures while instantiating Clusterer implementations.
ClustererFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException: Constructs a ClustererFactoryException with no detail message.
ClustererFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException: Constructs a ClustererFactoryException with the specified detailed message.
ClustererFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException: Constructs a ClustererFactoryException with the specified detailed message and a cause.
ClustererFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException: Constructs a ClustererFactoryException with the specified detailed message and a cause.
clustererTable() - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory: Returns a table that maps, the clustering technique to an appropriate class implementing that clustering technique.
clusteringOf(String, List) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
clusteringOf(String, List) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty: clusteringOf
CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The SubmitWriter that has to be loaded for now.
CodeGenerator - Interface in edu.isi.pegasus.planner.code: The interface that allows us to plug in various code generators for writing out the concrete plan.
CodeGeneratorException - Exception in edu.isi.pegasus.planner.code: The baseclass of the exception that is thrown by all Code Generators.
CodeGeneratorException() - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException: Constructs a CodeGeneratorException with no detail message.
CodeGeneratorException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException: Constructs a CodeGeneratorException with the specified detailed message.
CodeGeneratorException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException: Constructs a CodeGeneratorException with the specified detailed message and a cause.
CodeGeneratorException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException: Constructs a CodeGeneratorException with the specified just a cause.
CodeGeneratorFactory - Class in edu.isi.pegasus.planner.code: A factory class to load the appropriate type of Code Generator.
CodeGeneratorFactory() - Constructor for class edu.isi.pegasus.planner.code.CodeGeneratorFactory
CodeGeneratorFactoryException - Exception in edu.isi.pegasus.planner.code: Class to notify of failures while instantiating Code Generator implementations.
CodeGeneratorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException: Constructs a CodeGeneratorFactoryException with no detail message.
CodeGeneratorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException: Constructs a CodeGeneratorFactoryException with the specified detailed message.
CodeGeneratorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException: Constructs a CodeGeneratorFactoryException with the specified detailed message and a cause.
CodeGeneratorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException: Constructs a CodeGeneratorFactoryException with the specified detailed message and a cause.
COLLAPSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that if set in the Pegasus namespace determines the number of jobs that are collapsed into the super job.
COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: The logical name of the transformation that is able to run multiple jobs via mpi.
COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: The logical name of the transformation that is able to run multiple jobs sequentially.
collapseJobs(String, List, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Collapses the jobs having the same logical name according to the sites where they are scheduled.
COLLAPSER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that determines the collapser executable to be used to run the merged/collapsed job.
COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC: The key that designates the collector associated with the job
COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The key that designates the collector associated with the job.
columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Computes the maximum column lenght for pretty printing.
columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Computes the maximum column lenght for pretty printing.
combine(Profiles) - Static method in class edu.isi.pegasus.common.util.ProfileParser: Creates a profile string from the internal representation.
combine(List) - Static method in class edu.isi.pegasus.common.util.ProfileParser: Creates a profile string from the internal representation.
combine(String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator: Combines the three components that constitute a fully-qualified definition identifier into a single string.
combine(String, String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator: Combines the four components that reference a fully-qualified definition identifier into a single string.
combine(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job: Combines the three components together into a single string as namespace-name-version.
CommandLine - Class in edu.isi.pegasus.planner.invocation: This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
CommandLine() - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine: Default c'tor: Construct a hollow shell and allow further information to be added later.
CommandLine(String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine: Constructs an applications without arguments.
CommandLine(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine: Constructs an applications with arguments.
commandLineOpts - Variable in class edu.isi.pegasus.planner.client.Executable: The command line options passed to the executable
CommonProperties - Class in edu.isi.pegasus.common.util: This class creates a common interface to handle package properties.
CommonProperties(String) - Constructor for class edu.isi.pegasus.common.util.CommonProperties: ctor.
compare(Object, Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator: Compares this object with the specified object for order.
compare(Object, Object) - Method in class edu.isi.pegasus.planner.cluster.Horizontal.JobComparator: Compares this object with the specified object for order.
compare(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal.GraphNodeComparator: Compares this object with the specified object for order.
compare(Node, Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram.NodeComp
compare(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftGraphNodeComparator: Implementation of the Comparable interface.
compare(Object, Object) - Method in class edu.isi.pegasus.planner.visualize.MeasurementComparator: Implementation of the Comparable interface.
compare(Object, Object) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceComparator: Implementation of the Comparable interface.
compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.NameValue: Implementation of the Comparable interface.
compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.PCRelation
compareTo(Object) - Method in class edu.isi.pegasus.planner.ranking.Ranking: Implementation of the Comparable interface.
compareTo(Object) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: Compares the Rank object with another rank object.
complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: Small helper method to bundle repetitive complaints in a template for reporting progress.
complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: This is called when an attribute is encountered for an element that is invalid from the schema context and is not supported.
complete - Variable in class edu.isi.pegasus.planner.provisioner.Edge
COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The complete TC name for kickstart.
COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The complete TC name for kickstart.
COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The complete TC name for dirmanager.
COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The complete TC name for pegasus worker package.
COMPLETE_UNTAR_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The complete TC name for untar.
CompoundTransformation - Class in edu.isi.pegasus.planner.classes: A data class to contain compound transformations.
CompoundTransformation(String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation: Constructor
CompoundTransformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation: Overloaded Constructor
compTime - Variable in class edu.isi.pegasus.planner.provisioner.Edge
compute(String, String, String) - Method in interface edu.isi.pegasus.planner.namespace.aggregator.Aggregator: Do the aggregation function on the profile values.
compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MAX: Returns the maximum of two values.
compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MIN: Returns the minimum of two values.
compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Sum: Sums up the values.
compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Update: Returns the minimum of two values.
COMPUTE_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a compute job.
computeDownwardRank(GraphNode) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Computes the downward rank of a node.
computeRuntime() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the runtime associated with the job.
concreteDagEmpty(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: A callout method that dictates what needs to be done in case the concrete plan that is generated is empty.
CONDOR - Static variable in class edu.isi.pegasus.planner.classes.Profile
Condor - Class in edu.isi.pegasus.planner.code.generator.condor.style: Enables a job to be directly submitted to the condor pool of which the submit host is a part of.
Condor() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Condor: The default constructor.
Condor - Class in edu.isi.pegasus.planner.namespace: This helper class helps in handling the arguments specified in the Condor namespace by the user either through dax or through profiles in pool.
Condor() - Constructor for class edu.isi.pegasus.planner.namespace.Condor: The default constructor.
Condor(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Condor: The overloaded constructor
Condor - Class in edu.isi.pegasus.planner.transfer.sls: This uses the Condor File Transfer mechanism for the second level staging.
Condor() - Constructor for class edu.isi.pegasus.planner.transfer.sls.Condor: The default constructor.
CONDOR_CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory: The name of the class implementing the condor code generator.
CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration: The value for the condor configuration.
CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The namespace to use for condor dagman.
CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The namespace to use for condor dagman.
CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The namespace to use for condor dagman.
CONDOR_KICKSTART - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
CONDOR_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a vanilla condor execution.
CONDOR_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the Condor Style.
CONDOR_VERSION_COMMAND - Static variable in class edu.isi.pegasus.common.util.CondorVersion: The condor version command to be executed.
CondorC - Class in edu.isi.pegasus.planner.code.generator.condor.style: Enables a job to be directly submitted to the condor pool of which the submit host is a part of.
CondorC() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorC: The default constructor.
CONDORC_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a CondorC submission to remote schedds.
CONDORC_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the CondorC Style.
CondorG - Class in edu.isi.pegasus.planner.code.generator.condor.style: This implementation enables a job to be submitted via CondorG to remote grid sites.
CondorG() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorG: The default Constructor.
CondorGenerator - Class in edu.isi.pegasus.planner.code.generator.condor: This class generates the condor submit files for the DAG which has to be submitted to the Condor DagMan.
CondorGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default constructor.
CondorGlideIN - Class in edu.isi.pegasus.planner.code.generator.condor.style: Enables a job to be submitted to nodes that are logically part of the local pool, but physically are not.
CondorGlideIN() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN: The default constructor.
CondorGlideinWMS - Class in edu.isi.pegasus.planner.code.generator.condor.style: Jobs targeting glidinWMS pools.
CondorGlideinWMS() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS: The default constructor.
CondorQuoteParser - Class in edu.isi.pegasus.planner.code.generator.condor: A utility class to correctly quote arguments strings before handing over to Condor.
CondorQuoteParser() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
CondorQuoteParserException - Exception in edu.isi.pegasus.planner.code.generator.condor: This class is used to signal errors while parsing argument strings for Condor Quoting.
CondorQuoteParserException(String, int) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException: The overloaded constructor
CondorQuoteParserException(String, int, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException: The overloaded constructor
CondorStyle - Interface in edu.isi.pegasus.planner.code.generator.condor: An interface to allow us to apply different execution styles to a job via Condor DAGMAN.
CondorStyleException - Exception in edu.isi.pegasus.planner.code.generator.condor: A specific exception for the Condor Style generators.
CondorStyleException() - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException: Constructs a CondorStyleException with no detail message.
CondorStyleException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException: Constructs a CondorStyleException with the specified detailed message.
CondorStyleException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException: Constructs a CondorStyleException with the specified detailed message and a cause.
CondorStyleException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException: Constructs a CondorStyleException with the specified just a cause.
CondorStyleFactory - Class in edu.isi.pegasus.planner.code.generator.condor: A factory class to load the appropriate type of Condor Style impelementations.
CondorStyleFactory() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The default constructor.
CondorStyleFactoryException - Exception in edu.isi.pegasus.planner.code.generator.condor: Class to notify of failures while instantiating Condor Style implementations.
CondorStyleFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException: Constructs a CondorStyleFactoryException with no detail message.
CondorStyleFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message.
CondorStyleFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message and a cause.
CondorStyleFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message and a cause.
condorUniverse - Variable in class edu.isi.pegasus.planner.classes.Job: The universe in which the job has to be executed.
condorVariables - Variable in class edu.isi.pegasus.planner.classes.Job: For Condor Namespace.
CondorVersion - Class in edu.isi.pegasus.common.util: A utility class that allows us to determine condor version.
CondorVersion(LogManager) - Constructor for class edu.isi.pegasus.common.util.CondorVersion: The default constructor.
CondorVersion.CondorVersionCallback - Class in edu.isi.pegasus.common.util: An inner class, that implements the StreamGobblerCallback to determine the version of Condor being used.
CondorVersion.CondorVersionCallback() - Constructor for class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback: The Default Constructor
CONFIG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate a CONFIG message.
CONFIG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate a CONFIG message.
CONFIGURED_TEMPLATES_Q - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
ConfigXmlParser - Class in edu.isi.pegasus.planner.parser: This is the parsing class, used to parse the pool config file in xml format.
ConfigXmlParser(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser: Default Class Constructor.
ConfigXmlParser(String, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser: Class Constructor intializes the parser and turns on validation.
connect(Properties) - Method in interface edu.isi.pegasus.planner.catalog.Catalog: Establishes a link between the implementation and the thing the implementation is build upon.
connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Connects to the database.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Establishes a connection to the database from the properties.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Establishes a link between the implementation and the thing the implementation is build upon.
connect(String, Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Connects to an individual replica catalog.
connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Reads the on-disk map file into memory.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Establishes a connection to the database from the properties.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Establishes a connection to the file from the properties.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Issues the condor status command, and stores the results retrieved back into a List.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Establishes a connection to the file from the properties.
connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Initializes the Site Catalog Parser instance for the file.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Establishes a connection to the file from the properties.
connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Initializes the Site Catalog Parser instance for the file.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Empty for the time being.
connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database: Connects to the database.
connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.work.Database: Establishes a connection to the database from the properties.
connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.client.RCClient: Connects the interface with the replica catalog implementation.
connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX: A convenience method to connect on the basis of PegasusProperties.
connect(Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Establishes a connection to the database from the properties.
Connection - Class in edu.isi.pegasus.planner.catalog.site.classes: This data class describes a connection property for replica catalog.
Connection() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection: The default constructor.
Connection(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection: The overloaded constructor.
connectMds() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery: Create and return a MDS LdapContext.
CONSOLE_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate a CONSOLE error message.
CONSOLE_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate a CONSOLE message.
constituentJobsIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Returns an iterator to the constituent jobs of the AggregatedJob.
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner: Constructs a condor variable in the condor profile namespace associated with the job.
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Constructs a condor variable in the condor profile namespace associated with the constituentJob.
construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Constructs a condor variable in the condor profile namespace associated with the job.
construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript: Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Constructs a condor variable in the condor profile namespace associated with the job.
construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
construct(Job, String) - Method in interface edu.isi.pegasus.planner.code.POSTScript: Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector: Constructs a new element of the format (key=value).
construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat: Constructs a new element of the format (key=value).
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: Constructs a condor variable in the condor profile namespace associated with the job.
construct(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Constructs a condor variable in the condor profile namespace associated with the job.
constructAbstractAggregatedJob(List, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Constructs a new aggregated job that contains all the jobs passed to it.
constructAbstractAggregatedJob(List, String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Constructs an abstract aggregated job that has a handle to the appropriate JobAggregator that will be used to aggregate the jobs.
constructAbstractAggregatedJob(List, String, String) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Constructs an abstract aggregated job that has a handle to the appropriate JobAggregator that will be used to aggregate the jobs.
constructCleanupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Constructs a kickstart setup constituentJob
constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the ID for the clustered job corresponding to a partition.
constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Vertical: Returns the ID for the clustered job corresponding to a partition.
constructCondorKey(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Constructs a condor variable in the condor profile namespace associated with the job.
constructDAGJob(String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
constructDAGJob(Job, File, File, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
constructDAGJob(Partition, File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
constructDAGManKnobs(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs Any extra arguments that need to be passed to dagman, as determined from the properties file.
constructDAGManKnobs(PegasusProperties) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Constructs Any extra arguments that need to be passed to dagman, as determined from the properties file.
constructDefaultURLToPegasusWorkerPackage(String, SysInfo) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Constructs the default URL's for the pegasus worker package.
constructEntry(String, float, long) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: Returns an entry that needs to be plotted in the graph.
constructEntry(String, float, float, float) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: Returns an entry that needs to be plotted in the graph.
constructFileKey(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Constructs the key for an entry to the file table.
constructFileTX(PegasusFile, String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Constructs the FileTransfer object on the basis of the transiency information.
constructGridResource(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC: Constructs the grid_resource entry for the job.
constructID(String, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Given an integer id, returns a string id that is used for the clustered job.
constructJobID(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Returns the id for a job
constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS: Calls out to the callback with appropriate relations between the partitions constructed for the levels.
constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Calls out to the callback with appropriate relations between the partitions constructed for the levels.
constructMap(String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Constructs a map with the numbers/values for the collapsing factors to collapse the nodes of same type.
constructMap(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Constructs a map with the numbers/values to be passed in the RSL handle for certain pools.
constructNewDagInfo(DagInfo, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: Constructs a DagInfo object for the decomposed Dag on the basis of the jobs which are deleted from the DAG by the reduction algorithm Note : We are plainly copying the inputFiles and the outputFiles.
constructNewSubInfos(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: constructs the Vector of subInfo objects corresponding to the reduced ADAG.
constructPartition() - Method in class edu.isi.pegasus.planner.partitioner.Partition: It while looking at the node list constructs the relations between the jobs in the partition, that can be gotten through getRelationsInPartition().
constructPartitionName(String, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter: It constructs the partition name given the daxName.
constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS: Given a list of jobs, constructs (one or more) partitions out of it.
constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Given a list of jobs, constructs (one or more) partitions out of it.
constructPartitions(Callback, List, int, String) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Given a list of jobs, constructs (one or more) partitions out of it.
constructPegasusPlanPrescript(Job, PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs the pegasus plan prescript for the subdax
constructPREJob(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Constructs the prejob that fetches sls file, and then invokes transfer again.
constructSetupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Constructs a kickstart setup constituentJob
constructSiteCatalog(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog: Generates a sample site catalog.
constructSiteToSRMServerMap(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Constructs a Properties objects by parsing the relevant SRM pegasus properties.
constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
constructTCEntryFromJobHints(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Constructs a TC entry object from the contents of a job.
constructTCEntryFromPath() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns a tranformation catalog entry object constructed from the path environment variable
constructTransformationCatalogEntryForDAGMan(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs TransformationCatalogEntry for DAGMan.
constructURL(String, String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Constructs a URL with the prefix as the poolname enclosed in #.
contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns boolean indicating whether the store has a SiteCatalogEntry matching a handle.
contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Returns a boolean indicating if an entry for a Site with a particular id exists or not.
containsAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if an abstractjob exists in the DAX
containsAbstractJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a jobid exists in the DAX
containsDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a DAG job exists in the DAX
containsDAGId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a DAG job id exists in the DAX
containsDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a DAX job exists in the DAX
containsDAXId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a DAX job id exists in the DAX
containsExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG: Checks if a given executable exists in the DAX based Transformation Catalog
containsJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a job exists in the DAX
containsJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Check if a jobid exists in the DAX
containsKey(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Hints: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: Returns true if the namespace contains a mapping for the specified key.
containsKey(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: Returns false.
containsKey(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: Returns true if the namespace contains a mapping for the specified key.
containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Returns whether there is an entry for a particular site or not.
containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.TPT: Returns whether there is an entry for a particular site or not.
containsLFN(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns a boolean indicating whether the store has a mapping for a particular LFN or not.
containsTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns a boolean indicating whether the store contains an entry corresponding to a particular transformation or not.
containsTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns a boolean indicating whether the store contains an entry corresponding to a particular transformation or not.
containsTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG: Checks if a given Transformation exists in the DAX based Transformation Catalog
convert(SiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry: An adapter method that converts the SiteInfo object to SiteCatalogEntry object.
convert(SiteInfo, LogManager) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry: An adapter method that converts the SiteInfo object to SiteCatalogEntry object.
convert(String, String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Convert a VDS Properties file to Pegasus properties.
convert(Map) - Method in class edu.isi.pegasus.planner.namespace.Globus: Converts a map with RSL kv-pairs into an RSL string.
convert(ADag) - Static method in class edu.isi.pegasus.planner.partitioner.graph.Adapter: Converts the ADag to Graph instance.
convertException(String, Exception) - Static method in class edu.isi.pegasus.common.util.DynamicLoader: Converts an exception from the class loader into an error message.
convertException(Exception) - Method in class edu.isi.pegasus.common.util.DynamicLoader: Converts an exception from the class loader into an error message.
convertException() - Method in exception edu.isi.pegasus.common.util.FactoryException: Converts most of the common instantiation exceptions from the class loader into an error message.
convertException(int) - Method in exception edu.isi.pegasus.common.util.FactoryException: Converts most of the common instantiation exceptions from the class loader into an error message.
convertException(String, Throwable, int) - Static method in exception edu.isi.pegasus.common.util.FactoryException: Converts most of the common instantiation exceptions from the class loader into an error message.
convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.Client: Returns an error message that chains all the lower order error messages that might have been thrown.
convertException(Exception) - Static method in class edu.isi.pegasus.planner.client.Executable: Returns an error message that chains all the lower order error messages that might have been thrown.
convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.client.Executable: Returns an error message that chains all the lower order error messages that might have been thrown.
convertExceptionToString(String, Throwable) - Static method in class edu.isi.pegasus.common.util.DynamicLoader: Converts an exception from the class loader into an error message.
convertExecutableToTCE(Executable) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Converts the executable into transformation catalog entries
convertFromSecondsTo(long, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: Converts from seconds to one of the units specified.
convertFromSecondsTo(long, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: Converts from seconds to one of the units specified.
convertTC() - Method in class edu.isi.pegasus.planner.client.TCConverter: Converts transformation catalog from one format to another
convertTCEntryFrom(List<String>, String) - Method in class edu.isi.pegasus.planner.client.TCConverter: Parses the input files in the input format and returns the output as a TransformationStore instance
convertTCEntryTo(TransformationStore, String, String) - Method in class edu.isi.pegasus.planner.client.TCConverter: Converts Transformation store to the given output format.
convertToList(Vector) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Converts a Vector to a List.
convertToList(Set) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Converts a Set to a List.
convertToSiteInfo(SiteCatalogGenerator.Site) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: An adapter method that converts the Site object to the SiteInfo object corresponding to the site catalog schema version 2.
convertToTransferInputFormat(Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Convers the collection of files into an input format suitable for the transfer executable
CORES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The key for the number of cores for the multiplier factor in stampede.
CORES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The number of cores that are associated with the job.
cost - Variable in class edu.isi.pegasus.planner.provisioner.Edge
count - Variable in class edu.isi.pegasus.planner.classes.DagInfo: Refers to the number of the Abstract Dags which are being sent to the Concrete Planner in response to the user's request.
counter - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The counter to track the number of invocation records.
CPlanner - Class in edu.isi.pegasus.planner.client: This is the main program for the Pegasus.
CPlanner() - Constructor for class edu.isi.pegasus.planner.client.CPlanner: Default constructor.
CPlanner(LogManager) - Constructor for class edu.isi.pegasus.planner.client.CPlanner: The overload constructor.
CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The logical name with which to query the transformation catalog for cPlanner executable.
CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The logical name with which to query the transformation catalog for cPlanner executable.
CPU - Class in edu.isi.pegasus.planner.invocation: The CPU element.
CPU() - Constructor for class edu.isi.pegasus.planner.invocation.CPU: The default constructor
CPU(String) - Constructor for class edu.isi.pegasus.planner.invocation.CPU: Constructs a piece of data.
create() - Static method in class edu.isi.pegasus.planner.catalog.site.classes.LocalSiteCatalogEntry: Creates a default site catalog entry for site local with the VO set to pegasus.
create(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.LocalSiteCatalogEntry: Creates a default site catalog entry for site local with the VO set to pegasus.
CREATE_AND_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key that triggers the kickstart to create and then the working directory to it before launching an executable.
CREATE_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: MySQL statement for checking for creating database
CREATE_DIR_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a job that creates directories at the remote pools.
CREATE_DIR_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: Constant prefix for the names of the create directory nodes.
CREATE_DIR_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: Constant suffix for the names of the create directory nodes.
createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Creates a cleanup job that removes the files from remote working directory.
createCleanupJob(String, List, Job) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation: Creates a cleanup job that removes the files from remote working directory.
createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM: Creates a cleanup job that removes the files from remote working directory.
createConnectionURLProperties() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Creates the properties that are required to compose the HTTP URL to the MYOSG website.
createDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Creates data base
CreateDirectory - Class in edu.isi.pegasus.planner.refiner: This common interface that identifies the basic functions that need to be implemented to introduce random directories in which the jobs are executed on the remote execution pools.
CreateDirectory(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CreateDirectory: A pratically nothing constructor !
createEndLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.Event: Creates a log message that connects the parent entities with the children.
createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Creates a log message that connects the parent entities with the children.
createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Creates a log message that connects the parent entities with the children.
createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Creates a log message that connects the parent entities with the children.
createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Creates a log message that connects the parent entities with the children.
createHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog: Creates an object describing the head node filesystem.
createHeadNodeFS(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil: Creates an object describing the head node filesystem.
createHeadNodeFS(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil: Creates an object describing the head node filesystem.
createIdHierarchyLogMsg(String, String, String, Iterator<String>) - Static method in class edu.isi.ikcap.workflows.util.logging.LogEvent
createLogMessage() - Method in interface edu.isi.pegasus.common.logging.Event: Creates a log message with the contents of the internal log buffer.
createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Creates a log message with the contents of the internal log buffer.
createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Creates a log message with the contents of the internal log buffer.
createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Creates a log message with the contents of the internal log buffer.
createLogMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Creates a log message with the contents of the internal log buffer.
createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.Event: Creates a log message with the contents of the internal log buffer.
createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Creates a log message with the contents of the internal log buffer.
createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Creates a log message with the contents of the internal log buffer.
createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Creates a log message with the contents of the internal log buffer.
createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Creates a log message with the contents of the internal log buffer.
createLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
createNoOPJob(String) - Method in class edu.isi.pegasus.planner.client.CPlanner: It creates a NoOP job that runs on the submit host.
createNoOPJob(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: It creates a NoOP job that runs on the submit host.
createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Composes the SiteData object corresponding to the element name in the XML document.
createObject(Invocation, String, List, List) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: This method determines the actively parsed element, creates the Java object that corresponds to the element, and sets the member variables with the values of the attributes of the element.
createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser: Composes the SiteData object corresponding to the element name in the XML document.
createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: Composes the SiteData object corresponding to the element name in the XML document.
createParserInstance() - Method in class edu.isi.pegasus.planner.parser.Parser: Creates an instance of the parser, and sets the various options to it.
createPartition(List) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Creates a partition out of a list of nodes.
createPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Creates the property key
createRegistrationJob(String, Job, Collection, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Creates the registration jobs, which registers the materialized files on the output site in the Replica Catalog.
CreateSampleSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.classes: Generates a sample site catalog in XML.
CreateSampleSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
createSetXBitJob(Collection<FileTransfer>, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Creates a dirmanager job, that does a chmod on the file being staged.
createSetXBitJob(FileTransfer, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Creates a dirmanager job, that does a chmod on the file being staged.
createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
createSiteCatalogEntry(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil: Creates a Pegasus SiteCatalogEntry object from the information in VORS.
createSiteCatalogEntry(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil: Creates a Pegasus SiteCatalogEntry object from the information in VORS.
createStartLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
createSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Creates the submit directory for the workflow.
createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Creates the submit directory for the workflow.
createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Creates the submit directory for the workflow.
createSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Creates the submit directory for the workflow.
createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Creates the submit directory for the workflow.
createSymbolicLink(String, String, File, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner: This method generates a symlink between two files
createSymbolicLink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: This method generates a symlink between two files
createSymbolicLink(String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: This method generates a symlink between two files
createSymbolicLink(String, String) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: This method generates a symlink between two files
createSymbolicLinktoCacheFile(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Creates a symbolic link to the DAX file in a dax sub directory in the submit directory
createSymbolicLinktoDAX(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Creates a symbolic link to the DAX file in a dax sub directory in the submit directory
createSymlink(String, File) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the number of partitions referred to in the PDAX file.
createSyncJobBetweenLevels(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: It creates a NoOP synch job that runs on the submit host.
CreateTCDatabase - Class in edu.isi.pegasus.planner.catalog.transformation.impl: This class provides a bridge for creating and initializing transformation catalog on database .
CreateTCDatabase(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Creates a JDBCTC instance .
createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Constructs a general transfer job that handles multiple transfers per transfer job.
createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Constructs a general transfer job that handles single transfers per transfer job.
createTransferJob(Job, String, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Constructs a general transfer job that handles single transfers per transfer job.
createTransferJob(Job, String, Collection, Collection, String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: This constructs the Job object for the transfer node.
createTransferJob(Job, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Constructs a general transfer job that handles single transfers per transfer job.
createWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog: Creates an object describing the worker node filesystem.
createWorkerNodeFS(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil: Creates an object describing the worker node filesystem.
createWorkerNodeFS(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil: Creates an object describing the worker node filesystem.
CredentialHandler - Interface in edu.isi.pegasus.common.credential: The credential interface that defines the credentials that can be associated with jobs.
CredentialHandler.TYPE - Enum in edu.isi.pegasus.common.credential: An enumeration of valid types of credentials that are supported.
CredentialHandler.TYPE() - Constructor for enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
CredentialHandlerFactory - Class in edu.isi.pegasus.common.credential: A factory class to load the appropriate type of Condor Style impelementations.
CredentialHandlerFactory() - Constructor for class edu.isi.pegasus.common.credential.CredentialHandlerFactory: The default constructor.
CredentialHandlerFactoryException - Exception in edu.isi.pegasus.common.credential: Class to notify of failures while instantiating Condor Style implementations.
CredentialHandlerFactoryException(String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException: Constructs a CondorStyleFactoryException with no detail message.
CredentialHandlerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message.
CredentialHandlerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message and a cause.
CredentialHandlerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException: Constructs a CondorStyleFactoryException with the specified detailed message and a cause.
critEdge - Variable in class edu.isi.pegasus.planner.provisioner.Node
cState - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser: Table to contain the state transition diagram for the parser.
Currently - Class in edu.isi.pegasus.common.util: Create a common interface to handle obtaining string timestamps.
Currently() - Constructor for class edu.isi.pegasus.common.util.Currently: Default ctor: Create a new instance with a default formatting string for timestamps.
Currently(String) - Constructor for class edu.isi.pegasus.common.util.Currently: Ctor: Create a new instance with a formatting string for time stamps.
Currently(SimpleDateFormat) - Constructor for class edu.isi.pegasus.common.util.Currently: Ctor: Create a new instance with a formatting string for time stamps.

D

DAG - Class in edu.isi.pegasus.planner.dax: DAG Class to hold the DAG job object.
DAG(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG: Create a DAG object
DAG(DAG) - Constructor for class edu.isi.pegasus.planner.dax.DAG: Copy Constructor
DAG(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG: Create a DAG object
DAG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
DAG_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
DAG_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a chmod job that sets the xbit on the remote end.
DAG_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The constant string to write for dag job notifications.
DAG_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The class ad for the jobId.
dagInfo - Variable in class edu.isi.pegasus.planner.classes.ADag: The DagInfo object which contains the information got from parsing the dax file.
DagInfo - Class in edu.isi.pegasus.planner.classes: Holds the information needed to make one dag file corresponding to a Abstract Dag.
DagInfo() - Constructor for class edu.isi.pegasus.planner.classes.DagInfo: The default constructor.
DAGJob - Class in edu.isi.pegasus.planner.classes: This is a data class that stores the contents of the DAG job in a DAX conforming to schema 3.0 or higher.
DAGJob() - Constructor for class edu.isi.pegasus.planner.classes.DAGJob: The default constructor.
DAGJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAGJob: The overloaded construct that constructs a DAG job by wrapping around the Job job.
dagJobs - Variable in class edu.isi.pegasus.planner.classes.DagInfo: Vector of String objects containing the jobname_id of jobs making the abstract dag.
DAGMAN - Static variable in class edu.isi.pegasus.planner.classes.Profile
Dagman - Class in edu.isi.pegasus.planner.namespace: This profile namespace is the placeholder for the keys that go into the .dag file .
Dagman() - Constructor for class edu.isi.pegasus.planner.namespace.Dagman: The default constructor.
Dagman(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman: The overloaded constructor.
Dagman(Map, String) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman: The overloaded constructor.
DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The dagman knobs controlled through property.
DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The dagman knobs controlled through property.
DAGMAN_PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The prefix for DAGMan specific properties
dagmanVariables - Variable in class edu.isi.pegasus.planner.classes.Job: The DAGMAN namespace profile variable holding the dagman profiles.
Data - Class in edu.isi.pegasus.planner.classes: This is the container for all the Data classes.
Data() - Constructor for class edu.isi.pegasus.planner.classes.Data: The default constructor.
Data - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
Data() - Constructor for class edu.isi.pegasus.planner.invocation.Data: Default c'tor: Construct a hollow shell and allow further information to be added later.
Data(String) - Constructor for class edu.isi.pegasus.planner.invocation.Data: Constructs a piece of data.
Data(String, boolean) - Constructor for class edu.isi.pegasus.planner.invocation.Data: Constructs a piece of data.
DATA_CHARACTERIZATION_PROGRAM - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
DATA_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile: The type denoting that a logical file is a data file.
data_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
data_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
data_space - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
data_space - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
DATA_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile: The string value of a file that is of type data.
Database - Class in edu.isi.pegasus.planner.catalog.transformation.impl
Database() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Database - Class in edu.isi.pegasus.planner.catalog.work: This class implements a work catalog on top of a simple table in a JDBC database.
Database(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.work.Database: Convenience c'tor: Establishes the connection to the work catalog database.
Database() - Constructor for class edu.isi.pegasus.planner.catalog.work.Database: Default empty constructor creates an object that is not yet connected to any database.
DATABASE_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter: The database format.
DataReuseEngine - Class in edu.isi.pegasus.planner.refiner: The data reuse engine reduces the workflow on the basis of existing output files of the workflow found in the Replica Catalog.
DataReuseEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine: The constructor
DataReuseEngine.BooleanBag - Class in edu.isi.pegasus.planner.refiner: A bag implementation that cam be used to hold a boolean value associated with the graph node
DataReuseEngine.BooleanBag() - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: The default constructor.
DATE_FORMAT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The date format to be used while passing dates to the URL construction.
DATE_FORMAT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
DATE_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
dateEnd - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
dateStart - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
DateUtils - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
DateUtils() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
DAX - Class in edu.isi.pegasus.planner.dax: Creates a DAX job object
DAX(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX: Create a DAX job object
DAX(DAX) - Constructor for class edu.isi.pegasus.planner.dax.DAX: Copy Constructor
DAX(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX: Create a DAX job object
DAX2CDAG - Class in edu.isi.pegasus.planner.parser.dax: This creates a dag corresponding to one particular partition of the whole abstract plan.
DAX2CDAG(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: The overloaded constructor.
DAX2Graph - Class in edu.isi.pegasus.planner.parser.dax: This callback implementation ends up building a detailed structure of the graph referred to by the abstract plan in dax, that should make the graph traversals easier.
DAX2Graph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The overloaded constructor.
DAX2LabelGraph - Class in edu.isi.pegasus.planner.parser.dax: The callback, that ends up building a label graph.
DAX2LabelGraph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph: The overloaded constructor.
DAX2Metadata - Class in edu.isi.pegasus.planner.parser.dax: A callback that causes the parser to exit after the metadata about the DAX has been parsed.
DAX2Metadata(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: The overloaded constructor.
DAX2NewGraph - Class in edu.isi.pegasus.planner.parser.dax: An exploratory implementation that builds on the DAX2Graph.
DAX2NewGraph(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: The overloaded constructor.
DAX_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
DAX_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
DAX_INDEX_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The dax index
DAX_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a chmod job that sets the xbit on the remote end.
DAX_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The constant string to write for dax job notifications.
DAX_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The classad for generating the DAX ID
DAX_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The DAX label.
DAX_PARSER2_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: The DAXParser3 classname
DAX_PARSER3_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: The DAXParser3 classname
DAX_REPLICA_STORE_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The name of the Replica Catalog Implementer that serves as the source for cache files.
DAX_REPLICA_STORE_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The name of the source key for Replica Catalog Implementer that serves as the repository for DAX Replica Store
DAX_REPLICA_STORE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Suffix to be applied for the DAX Replica Store.
DAX_VERRSION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The DAX version.
DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
DAX_VERSION_3_3_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
DAX_VERSION_WITHOUT_DOUBLE_NEGATIVE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The constant designating the version when the double negative transfer and registration flags were removed.
DAXJob - Class in edu.isi.pegasus.planner.classes: This is a data class that stores the contents of the DAX job in a DAX conforming to schema 3.0 or higher.
DAXJob() - Constructor for class edu.isi.pegasus.planner.classes.DAXJob: The default constructor.
DAXJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAXJob: The overloaded construct that constructs a DAX job by wrapping around the Job job.
DAXParser - Interface in edu.isi.pegasus.planner.parser.dax: An interface for all the DAX Parsers
DAXParser2 - Class in edu.isi.pegasus.planner.parser.dax: This class parses the XML file whichis generated by Abstract Planner and ends up making an ADag object which contains theinformation to make the Condor submit files.
DAXParser2(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser2: The default constructor
DAXParser3 - Class in edu.isi.pegasus.planner.parser.dax: This class uses the Xerces SAX2 parser to validate and parse an XML document conforming to the DAX Schema 3.2
DAXParser3(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3: The overloaded constructor.
DAXParser3.Arguments - Class in edu.isi.pegasus.planner.parser.dax: Private class to handle mix data content for arguments tags.
DAXParser3.Arguments() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: The default constructor
DAXParserFactory - Class in edu.isi.pegasus.planner.parser: A factory class to load the appropriate DAX Parser and Callback implementations that need to be passed to the DAX Parser.
DAXParserFactory() - Constructor for class edu.isi.pegasus.planner.parser.DAXParserFactory
DAXParserFactoryException - Exception in edu.isi.pegasus.planner.parser: Class to notify of failures while instantiating DAXCallback implementations.
DAXParserFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException: Constructs a DAXParserFactoryException with no detail message.
DAXParserFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException: Constructs a DAXParserFactoryException with the specified detailed message.
DAXParserFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException: Constructs a DAXParserFactoryException with the specified detailed message and a cause.
DAXParserFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException: Constructs a DAXParserFactoryException with the specified detailed message and a cause.
DAXReplicaStore - Class in edu.isi.pegasus.planner.code.generator: A generator that writes out the replica store containing a file based replica catalog that has the file locations mentioned in the DAX.
DAXReplicaStore() - Constructor for class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
DAXValidator - Class in edu.isi.pegasus.planner.client: This class reads to validate a DAX document.
DAXValidator(boolean) - Constructor for class edu.isi.pegasus.planner.client.DAXValidator: default c'tor
DAXWriter - Class in edu.isi.pegasus.planner.partitioner: The abstract class that identifies the interface for writing out a dax corresponding to a partition.
DAXWriter() - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter: The default constructor
DAXWriter(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter: The overloaded constructor.
DB_ALL_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.Catalog: The default DB Driver properties prefix.
DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: The DB Driver properties prefix.
DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog: The DB Driver properties prefix.
DB_PREFIX - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX: The DB Driver properties prefix.
DEBUG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate a DEBUG message.
DEBUG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate a DEBUG message.
decide(LoggingEvent) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
decrement(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Decrement the metrics when on the basis of type of job.
decrementLogging() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Deccrements the logging level by 1.
decrementLogging() - Method in class edu.isi.pegasus.planner.client.SCClient: Decrements the logging level by 1.
decrementLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter: Decrements the logging level by 1.
Default - Class in edu.isi.pegasus.common.logging.logger: The logging class that to log messages at different levels.
Default() - Constructor for class edu.isi.pegasus.common.logging.logger.Default: The constructor.
DEFAULT - Static variable in class edu.isi.pegasus.common.util.Separator: Deprecated. The default namespace is null.
Default - Class in edu.isi.pegasus.planner.selector.replica: The default replica selector that is used if non is specifed by the user.
Default(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Default: The overloaded constructor, that is called by load method.
Default - Class in edu.isi.pegasus.planner.transfer.refiner: The default transfer refiner, that implements the multiple refiner.
Default(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Default: The overloaded constructor.
DEFAULT_ADAG_COUNT_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Default attribute value for the count attribute
DEFAULT_ADAG_INDEX_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Default index value for the count attribute
DEFAULT_ARCHITECTURE - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The default Architecture the entry is associated with if none is specified
DEFAULT_BPS - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
DEFAULT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for the workflow.
DEFAULT_CALLBACK_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: Package to prefix "just" class names with.
DEFAULT_CHMOD_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with chmod jobs.
DEFAULT_CHUNK_FACTOR - Static variable in class edu.isi.pegasus.planner.client.RCClient: The default chunk factor that is used for biting off chunks of large files.
DEFAULT_CLEANUP_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Default category for registration jobs
DEFAULT_CLEANUP_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the cleanup jobs.
DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal: The default collapse factor for collapsing jobs with same logical name scheduled onto the same execution pool.
DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal: The default collapse factor for collapsing jobs with same logical name scheduled onto the same execution pool.
DEFAULT_COMP_ERROR_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_COMP_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_COMP_VARIANCE_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_CONDOR_BIN_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The default condor collector to query to for non LIGO VO's
DEFAULT_CONDOR_COLLECTOR_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The property key without the pegasus prefix'es to get the condor collector host.
DEFAULT_CONDOR_CONFIG_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_CREATE_DIR_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the create dir jobs.
DEFAULT_CTX - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
DEFAULT_DATA_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_DATABASE - Static variable in class edu.isi.pegasus.planner.client.TCConverter: The default database .
DEFAULT_DAX_CALLBACK - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties: The default DAXCallback that is loaded, if none is specified by the user.
DEFAULT_DAX_PARSER_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: The default DAXParser classname
DEFAULT_EXEC_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_FORMAT - Static variable in class edu.isi.pegasus.common.util.Currently: Default time format, which is compact and has a timezone
DEFAULT_GRID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The default VO to use if none is specified
DEFAULT_GRID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The default Grid to retreive the sites for.
DEFAULT_GRID_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The property key without the pegasus prefix'es to get the grid.
DEFAULT_GRIDSTART_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_INTER_SITE_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the inter site transfer jobs.
DEFAULT_INVOKE_LENGTH - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_JOB_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_KEY - Static variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: The default key to use for logging messages
DEFAULT_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph: The default key for the VDS namespace profile, that is used in case none is specified by the user.
DEFAULT_LATENCY - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
DEFAULT_LIGO_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The default condor collector to query to for LIGO VO
DEFAULT_LOCAL_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
DEFAULT_LOCAL_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: The default clustering factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
DEFAULT_LOCAL_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
DEFAULT_LOCAL_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
DEFAULT_LOGGER - Static variable in class edu.isi.pegasus.common.logging.LogManager: The default Logger
DEFAULT_LOGGING_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_LOGGING_LEVEL - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The default logging level.
DEFAULT_LRC_IGNORE_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_MEGADAG_MODE - Static variable in class edu.isi.pegasus.planner.client.CPlanner: The default megadag mode that is used for generation of megadags in deferred planning.
DEFAULT_METADATA_TYPE - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Constant denoting default metadata type
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogFormatterFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogManagerFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.util.FactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in class edu.isi.pegasus.planner.classes.DagInfo: The default name for the ADag object, if not supplied in the DAX.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.ClustererFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.GridStartFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.DAXParserFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException: The default classname that is associated with the exception.
DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException: The default classname that is associated with the exception.
DEFAULT_NUMBER_OF_FREE_NODES - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The default number of nodes that are associated with a site if not found in the site catalog.
DEFAULT_NUMBER_OF_RESCUE_TRIES - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The value of number of rescue retries if no value is specified
DEFAULT_OS - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The default OS the entry is associated with if none is specified
DEFAULT_OUTPUT_DIR - Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The default output directory.
DEFAULT_OUTPUT_DIR - Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The default output directory.
DEFAULT_OUTPUT_FORMAT - Static variable in class edu.isi.pegasus.planner.client.SCClient: The default output format.
DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory: Package to prefix "just" class names with.
DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.work.WorkFactory: Package to prefix "just" class names with.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: The default package where the all the implementing classes are supposed to reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.SiteFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory: Package to prefix "just" class names with.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory: The default package where the all the implementing classes are supposed to reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The default package where the all the implementing classes are supposed to reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The package name where the implementations of this interface reside by default.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory: Package to prefix "just" class names with.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: Package to prefix "just" class names with.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory: The default package where all the implementations reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory: The default package where the all the implementing classes are supposed to reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory: The default package where the all the implementing classes provided with the VDS reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory: The default package where the all the implementing classes provided with the VDS reside.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory: The default package where the implementations reside, which this factory loads.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory: The default package where the implementations reside, which this factory loads.
DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory: The default package where the all the implementing classes are supposed to reside.
DEFAULT_PARSER_NAME - Variable in class edu.isi.pegasus.planner.parser.Parser: Default parser name.
DEFAULT_PARSER_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: Package to prefix "just" class names with.
DEFAULT_PARTITIONER_TYPE - Static variable in class edu.isi.pegasus.planner.client.PartitionDAX: The name of the default partitioner that is loaded, if none is specified by the user.
DEFAULT_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: The name of the class that does level based partitioning.
DEFAULT_POOL_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_POST_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The default value for the arguments passed to postscript
DEFAULT_PPS_PROVIDER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory: The default PPS implementation to be used.
DEFAULT_PRE_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The default value for the arguments passed to prescript
DEFAULT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: The default priority key associated with the cleanup jobs.
DEFAULT_RC_COLLECTION - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_REFINER - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The default transfer refiner name.
DEFAULT_REFINER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory: The default refiner implementation that is picked up.
DEFAULT_REGISTRATION_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Default category for registration jobs
DEFAULT_REMOTE_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
DEFAULT_REMOTE_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: The default clustering factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
DEFAULT_REMOTE_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
DEFAULT_REMOTE_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
DEFAULT_REPLICA_REG_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the replica registration jobs.
DEFAULT_REPLICA_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory: The name of the class in the DEFAULT package, that corresponds to the default replica selector.
DEFAULT_RETRIEVE_VALIDATED_SITES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The default VO to use to query the condor collector.
DEFAULT_RETRIEVE_VALIDATED_SITES_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The property key without the pegasus prefix'es to get the VO.
DEFAULT_RETRY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The default value for the JOB Retries
DEFAULT_RLI_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_RLS_EXIT_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_RLS_QUERY_ATTRIB - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_RLS_QUERY_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_RLS_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_RM_LOCATION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: The default path to rm executable.
DEFAULT_RM_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: The default logical name to rm executable.
DEFAULT_SETUP_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory: The name of the class in the DEFAULT package, that corresponds to the default site selector.
DEFAULT_SITE_SELECTOR_KEEP - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_SITE_SELECTOR_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_SIZE - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
DEFAULT_SLS_IMPL_CLASS - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory: The name of the class implementing the condor code generator.
DEFAULT_STAGE_IN_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the stagein jobs.
DEFAULT_STAGE_OUT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default priority key associated with the stage out jobs.
DEFAULT_STAGING_DELIMITER - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_STORAGE_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_SUBDAG_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The default category for the sub dax jobs.
DEFAULT_SUBDAX_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The default category for the sub dax jobs.
DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: Some Constants for backward compatibility.
DEFAULT_TC_MAPPER_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_TC_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The default timing source.
DEFAULT_TIMING_SOURCE - Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The default timing source.
DEFAULT_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The default timing units.
DEFAULT_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The default timing units.
DEFAULT_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
DEFAULT_TRANSFER_PROCESSES - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_TRANSFER_STREAMS - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_TX_SELECTOR_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
DEFAULT_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The default VO to use if none is specified
DEFAULT_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The default VO to use to query the condor collector.
DEFAULT_VO_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The property key without the pegasus prefix'es to get the VO.
DEFAULT_VORS_HOST - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The default VORS mVORSHost.
DEFAULT_VORS_PORT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The default VORS mVORSPort.
DEFAULT_WEIGHT - Static variable in class edu.isi.pegasus.planner.provisioner.Node
DEFAULT_XML_PRODUCER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory: The default XML producer implementation to be used.
defaultBrainDumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Returns default braindump entries.
DefaultImplementation - Class in edu.isi.pegasus.planner.refiner.createdir: The default implementation for creating create dir jobs.
DefaultImplementation() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
defaultParameters() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator: Returns the default parameters
defaultPOSTScript() - Method in interface edu.isi.pegasus.planner.code.GridStart: Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
defaultProps() - Static method in class edu.isi.pegasus.common.util.CommonProperties: Set some defaults, should values be missing in the dataset.
DefaultStreamGobblerCallback - Class in edu.isi.pegasus.common.util: The default callback for the stream gobbler, that logs all the messages to a particular logging level.
DefaultStreamGobblerCallback(int) - Constructor for class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback: The overloaded constructor.
defaultTCEntry(String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.RM: Returns a default TransformationCatalogEntry object for the rm executable.
defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultTCRCEntry() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultUntarTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
defaultXBitTCEntry(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Returns a default TC entry to be used in case entry is not found in the transformation catalog.
delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Deletes multiple mappings into the replica catalog.
delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Deletes a specific mapping from the replica catalog.
delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Deletes a very specific mapping from the replica catalog.
delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Deletes a very specific mapping from the replica catalog.
delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Deletes multiple mappings into the replica catalog.
delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Deletes a specific mapping from the replica catalog.
delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Deletes a specific mapping from the replica catalog.
delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Deletes multiple mappings into the replica catalog.
delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Deletes a very specific mapping from the replica catalog.
delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
delete(Map, boolean) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Deletes multiple mappings into the replica catalog.
delete(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Deletes a specific mapping from the replica catalog.
delete(String, ReplicaCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Deletes a very specific mapping from the replica catalog.
delete(String, String, Object) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
delete(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database: Deletes a mapping from the work catalog.
delete(String, String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.WorkCatalog: Deletes a mapping from the work catalog.
delete - Variable in class edu.isi.pegasus.planner.client.TCClient
deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
deleteByResource(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
deleted - Variable in class edu.isi.pegasus.planner.provisioner.Edge
DELETED_JOBS_LEVEL - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The MAX level is assigned as the level for deleted jobs.
deleteDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Deletes the database
deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Delete a list of profiles or all the profiles associated with a logical transformation.
deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Delete a list of profiles or all the profiles associated with a logical transformation.
deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Delete a list of profiles or all the profiles associated with a logical transformation.
deleteLFNProfiles(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Delete a list of profiles or all the profiles associated with a logical transformation.
deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
deletePFNProfiles(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
deleteProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Delete a given lfn or pfn profile
DELIMITER - Static variable in class edu.isi.pegasus.planner.classes.Job: The delimiter that has to be used to combine the name for the staged executable.
DELIMITER - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The delimiter with which to separate different fields in the notifications file.
DEPLOY_WORKER_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Constant suffix for the names of the deployment nodes.
DeployWorkerPackage - Class in edu.isi.pegasus.planner.refiner: The refiner that is responsible for adding - setup nodes that deploy a worker package on each deployment site at start of workflow execution - cleanup nodes that undeploy a worker package on each deployment site at end workflow execution
DeployWorkerPackage(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: A pratically nothing constructor !
DEPRECATED_BUNDLE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The deprecated bundle stagein key.
DEPRECATED_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The deprecated change dir key.
DEPRECATED_CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration: The value for the condor configuration.
DEPRECATED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace: The key is deprecated.
DEPRECATED_S3_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration: The value for the S3 configuration.
deprecatedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Warns about a deprecated profile key.
deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Namespace: Singleton access to the deprecated table that holds the deprecated keys, and the keys that replace them.
deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Singleton access to the deprecated table that holds the deprecated keys, and the keys that replace them.
deprecatedValueMessage(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration: Returns the deperecated value message
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The name of the underlying derivation.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The logical name of the transformation that creates directories on the remote execution pools.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The logical name of the transformation that creates directories on the remote execution pools.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The logical name of the transformation for the worker package
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The logical name of the transformation that removes directories on the remote execution pools.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: The name of the underlying derivation.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork: The name of the underlying derivation.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2: The name of the underlying derivation.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer: The name of the underlying derivation.
DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The name of the underlying derivation.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The derivation namespace for the cluster jobs.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The derivation namespace for the job.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The derivation namespace for the create dir jobs.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The derivation namespace for the create dir jobs.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The derivation namespace for the worker package.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The derivation namespace for the create dir jobs.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: The derivation namespace for for the transfer job.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork: The derivation namespace for for the transfer job.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2: The derivation namespace for for the transfer job.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer: The derivation namespace for for the transfer job.
DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The derivation namespace for for the transfer job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The version number for the derivations for cluster jobs.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The derivation version number for the job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The version number for the derivations for create dir jobs.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The version number for the derivations for create dir jobs.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The version number for the derivations for worker package.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The version number for the derivations for create dir jobs.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: The derivation version number for the transfer job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork: The derivation version number for the transfer job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2: The derivation version number for the transfer job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer: The derivation version number for the transfer job.
DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The derivation version number for the transfer job.
descendants - Variable in class edu.isi.pegasus.planner.provisioner.Node
DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Irods: The description.
DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Proxy: The description.
DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG: The description
DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh: The description
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Describes the transformation catalog mode.
description() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Vertical: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.cluster.Vertical: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.BFS: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.partitioner.BFS: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Returns a textual description of the partitioner implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Label: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.partitioner.Label: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.One2One: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.partitioner.One2One: Returns a textual description of the transfer implementation.
description() - Method in class edu.isi.pegasus.planner.partitioner.Partitioner: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Whole: A short description about the partitioner.
description() - Method in class edu.isi.pegasus.planner.partitioner.Whole: Returns a textual description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: A short description of the transfer implementation.
description() - Method in class edu.isi.pegasus.planner.selector.replica.Default: Returns a short description of the replica selector.
description() - Method in class edu.isi.pegasus.planner.selector.replica.Local: Returns a short description of the replica selector.
description() - Method in class edu.isi.pegasus.planner.selector.replica.Regex: Returns a short description of the replica selector.
description() - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns a short description of the replica selector.
description() - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector: Returns a short description of the replica selector, that is being implemented by the implementing class.
description() - Method in class edu.isi.pegasus.planner.selector.site.Group: Returns the description of the site selector.
description() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: This method returns a String describing the site selection technique that is being implemented by the implementing class.
description() - Method in class edu.isi.pegasus.planner.selector.site.Heft: This method returns a String describing the site selection technique that is being implemented by the implementing class.
description() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Returns a brief description of the site selection technique implemented by this class.
description() - Method in class edu.isi.pegasus.planner.selector.site.Random: Returns a brief description of the site selection technique being used.
description() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin: Returns a brief description of the site selection techinque implemented by this class.
description() - Method in interface edu.isi.pegasus.planner.selector.SiteSelector: This method returns a String describing the site selection technique that is being implemented by the implementing class.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: A short description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork: A short description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2: A short description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer: A short description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: A short description of the transfer refinement.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain: A short description of the transfer refinement.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: A short description of the transfer refinement.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Default: A short description of the transfer refinement.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Condor: A short description of the transfer implementation.
DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: A short description of the transfer implementation.
Descriptor - Class in edu.isi.pegasus.planner.invocation: This class is the container for a file descriptor object.
Descriptor() - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor: Default c'tor: Construct a hollow shell and allow further information to be added later.
Descriptor(int) - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor: Constructs a file descriptor.
desET - Variable in class edu.isi.pegasus.planner.provisioner.Node
DEST_ID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
dest_subnet_id - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Dest_Subnet_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
determine(Implementation, Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: Determines the bundle factor for a particular site on the basis of the stage in bundle value associcated with the underlying transfer transformation in the transformation catalog.
determineBuilt() - Method in class edu.isi.pegasus.common.util.Version: Determines the built as a time stamp.
determineChunkFactor() - Method in class edu.isi.pegasus.planner.client.RCClient: Sets the chunk factor for chunking up large input files.
determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract: It creates a single clustered job for the partition.
determineClusters(Partition) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer: Determine the clusters for a partition.
determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Determine the clusters for a partition.
determineDisabledChmodSites(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Builds up a set of disabled chmod sites
determineExitStatus(InvocationRecord) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer: Determines the exit code of an invocation record.
determineInputOutputFiles(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Determine the input and output files of the job on the basis of the order of the constituent jobs in the AggregatedJob.
determineInputOutputFiles(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.Vertical: Determine the input and output files of the job on the basis of the order of the constituent jobs in the AggregatedJob.
determineInstalled() - Method in class edu.isi.pegasus.common.util.Version: Determines the built and architecture of the installation.
determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS: Does a constrained breadth first search to identify the partitions, and calls out to write out the partition graph.
determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Label: Partitions the graph passed in the constructor, on the basis of the labels associated with the nodes in the graph.
determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.One2One: This ends up writing out a partition for each job in the dax.
determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Partitioner: The main function that ends up traversing the graph structure corrsponding to the dax and creates the smaller dax files(one dax file per partition) and the .pdax file that illustrates the partition graph.
determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Whole: This ends up writing out a partition for each job in the dax.
determinePlatform() - Method in class edu.isi.pegasus.common.util.Version: Determines the build platform.
determineRelativeSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner: Creates the submit directory for the workflow.
determineRelativeSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner: Creates the submit directory for the workflow.
determineRootWorkflowUUID(ADag, PlannerOptions, PegasusProperties) - Method in class edu.isi.pegasus.planner.client.CPlanner: Determines the workflow uuid for a workflow
determineSites() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: This is where the callout to the Partitioner should take place, that partitions the workflow into clusters and sends to the site selector only those list of jobs that are ready to be scheduled.
determineSLSInputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Generates a second level staging file of the input files to the worker node directory.
determineSLSInputTransfers(Job, String, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Generates a second level staging file of the input files to the worker node directory.
determineSLSInputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Generates a second level staging file of the input files to the worker node directory.
determineSLSOutputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Generates a second level staging file of the input files to the worker node directory.
determineSLSOutputTransfers(Job, String, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Generates a second level staging file of the input files to the worker node directory.
determineSLSOutputTransfers(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Generates a second level staging file of the input files to the worker node directory.
Diamond() - Static method in class edu.isi.pegasus.planner.dax.ADAG
DIGIT - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
DIRECTORY_EXTERNAL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The name of the key that indicates the directory in which the DAG has to be execute
DirectoryType - Class in edu.isi.pegasus.planner.catalog.site.classes: An abstract base class that creates a directory type.
DirectoryType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: The default constructor.
DirectoryType(List<FileServer>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: The overloaded constructor
DISABLE_INVOKE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties: the name of the property to disable invoke functionality
disableChmodJobCreation(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Returns a boolean indicating whether to disable chmod job creation for a site or not.
disableInvokeInGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whether to disable use of invoke or not.
displayResults(NamingEnumeration, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery: Displays the result on stdout instead of putting it in data classes.
doAdds() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
doBackupAndCreateSymbolicLinkForSubmitDirectory(String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner
doDeferredPlanning() - Method in class edu.isi.pegasus.planner.client.CPlanner: This ends up invoking the deferred planning code, that generates the MegaDAG that is used to submit the partitioned daxes in layers.
doDelete() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Returns a boolean whether the SLS implementation does a condor based modification or not.
doesCondorModifications() - Method in interface edu.isi.pegasus.planner.transfer.SLS: Returns a boolean whether the SLS implementation does a condor based modification or not.
doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Returns a boolean whether the SLS implementation does a condor based modification or not.
doesPreserveXBit() - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
DOMAIN - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS: Indicates that we are done with the partitioning.
done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Indicates that we are done with the traversal of the graph.
done() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Callback signalling that we are done with the parsing of the files.
done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Signals that the traversal of the workflow is done.
done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain: Prints out the bundles and chains that have been constructed.
done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Signals that the traversal of the workflow is done.
done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Signals that the traversal of the workflow is done.
done() - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Signals that the traversal of the workflow is done.
done() - Method in interface edu.isi.pegasus.planner.visualize.Callback: Callback signalling that we are done with the parsing of the files.
done() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Callback signalling that we are done with the parsing of the files.
done() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Callback signalling that we are done with the parsing of the files.
doneStageIn(Map<String, Bundle.PoolTransfer>, Implementation, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Signals that the traversal of the workflow is done.
doPartitionAndPlan(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner: Partitions and plans the workflow.
doPartitionAndPlan(String) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: This function is passed command line arguments.
doPartitionAndPlan(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Partitions and plans the workflow.
doQuery() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
doSet(Level) - Method in class edu.isi.pegasus.planner.client.RCClient
doStatWithKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Return a boolean indicating whether to turn the stat option for kickstart on or not.
downLen - Variable in class edu.isi.pegasus.planner.provisioner.Node
DOWNWARD_RANK - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The constant to be passed to the accessor functions to get or set the downward rank for a node.
DROP_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: MySQL statement for checking for dropping database
DSC() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
DUMMY_CONCAT_JOB - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The name concatenating dummy job that ensures that Condor does not start staging in before the directories are created.
DUMMY_CONCAT_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: The prefix assigned to the concatenating dummy job that ensures that Condor does not start staging in before the directories are created.
DUMMY_NODE_ID - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The id of the dummy root node added on the top of the graph.
dvName - Variable in class edu.isi.pegasus.planner.classes.Job: The name of the derivation in Chimera that generated the job.
dvNamespace - Variable in class edu.isi.pegasus.planner.classes.Job: The namespace to which the derivation is bound.
dvVersion - Variable in class edu.isi.pegasus.planner.classes.Job: The version of the derivation.
DynamicLoader - Class in edu.isi.pegasus.common.util: This class provides a dynamic class loading facility.
DynamicLoader(String) - Constructor for class edu.isi.pegasus.common.util.DynamicLoader

E

Edge - Class in edu.isi.pegasus.planner.provisioner: An instance of this class represent an edge of workflow which is data dependencies between two tasks.
Edge(Node, Node, String, long) - Constructor for class edu.isi.pegasus.planner.provisioner.Edge: Constructor
edgeList2Graph(Vector, Map) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser: Returns an adjacency list representation of the graph referred to by the list of edges.
edges - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
edu.isi.ikcap.workflows.util.logging - package edu.isi.ikcap.workflows.util.logging
edu.isi.pegasus.common.credential - package edu.isi.pegasus.common.credential
edu.isi.pegasus.common.credential.impl - package edu.isi.pegasus.common.credential.impl
edu.isi.pegasus.common.logging - package edu.isi.pegasus.common.logging
edu.isi.pegasus.common.logging.format - package edu.isi.pegasus.common.logging.format
edu.isi.pegasus.common.logging.logger - package edu.isi.pegasus.common.logging.logger
edu.isi.pegasus.common.util - package edu.isi.pegasus.common.util
edu.isi.pegasus.planner.catalog - package edu.isi.pegasus.planner.catalog
edu.isi.pegasus.planner.catalog.classes - package edu.isi.pegasus.planner.catalog.classes
edu.isi.pegasus.planner.catalog.replica - package edu.isi.pegasus.planner.catalog.replica
edu.isi.pegasus.planner.catalog.replica.impl - package edu.isi.pegasus.planner.catalog.replica.impl
edu.isi.pegasus.planner.catalog.site - package edu.isi.pegasus.planner.catalog.site
edu.isi.pegasus.planner.catalog.site.classes - package edu.isi.pegasus.planner.catalog.site.classes
edu.isi.pegasus.planner.catalog.site.impl - package edu.isi.pegasus.planner.catalog.site.impl
edu.isi.pegasus.planner.catalog.site.impl.myosg.classes - package edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
edu.isi.pegasus.planner.catalog.site.impl.myosg.test - package edu.isi.pegasus.planner.catalog.site.impl.myosg.test
edu.isi.pegasus.planner.catalog.site.impl.myosg.util - package edu.isi.pegasus.planner.catalog.site.impl.myosg.util
edu.isi.pegasus.planner.catalog.site.impl.old - package edu.isi.pegasus.planner.catalog.site.impl.old
edu.isi.pegasus.planner.catalog.site.impl.old.classes - package edu.isi.pegasus.planner.catalog.site.impl.old.classes
edu.isi.pegasus.planner.catalog.transformation - package edu.isi.pegasus.planner.catalog.transformation
edu.isi.pegasus.planner.catalog.transformation.classes - package edu.isi.pegasus.planner.catalog.transformation.classes
edu.isi.pegasus.planner.catalog.transformation.client - package edu.isi.pegasus.planner.catalog.transformation.client
edu.isi.pegasus.planner.catalog.transformation.impl - package edu.isi.pegasus.planner.catalog.transformation.impl
edu.isi.pegasus.planner.catalog.transformation.mapper - package edu.isi.pegasus.planner.catalog.transformation.mapper
edu.isi.pegasus.planner.catalog.work - package edu.isi.pegasus.planner.catalog.work
edu.isi.pegasus.planner.classes - package edu.isi.pegasus.planner.classes
edu.isi.pegasus.planner.client - package edu.isi.pegasus.planner.client
edu.isi.pegasus.planner.cluster - package edu.isi.pegasus.planner.cluster
edu.isi.pegasus.planner.cluster.aggregator - package edu.isi.pegasus.planner.cluster.aggregator
edu.isi.pegasus.planner.code - package edu.isi.pegasus.planner.code
edu.isi.pegasus.planner.code.generator - package edu.isi.pegasus.planner.code.generator
edu.isi.pegasus.planner.code.generator.condor - package edu.isi.pegasus.planner.code.generator.condor
edu.isi.pegasus.planner.code.generator.condor.style - package edu.isi.pegasus.planner.code.generator.condor.style
edu.isi.pegasus.planner.code.gridstart - package edu.isi.pegasus.planner.code.gridstart
edu.isi.pegasus.planner.common - package edu.isi.pegasus.planner.common
edu.isi.pegasus.planner.dax - package edu.isi.pegasus.planner.dax
edu.isi.pegasus.planner.invocation - package edu.isi.pegasus.planner.invocation
edu.isi.pegasus.planner.namespace - package edu.isi.pegasus.planner.namespace
edu.isi.pegasus.planner.namespace.aggregator - package edu.isi.pegasus.planner.namespace.aggregator
edu.isi.pegasus.planner.parser - package edu.isi.pegasus.planner.parser
edu.isi.pegasus.planner.parser.dax - package edu.isi.pegasus.planner.parser.dax
edu.isi.pegasus.planner.parser.pdax - package edu.isi.pegasus.planner.parser.pdax
edu.isi.pegasus.planner.parser.tokens - package edu.isi.pegasus.planner.parser.tokens
edu.isi.pegasus.planner.partitioner - package edu.isi.pegasus.planner.partitioner
edu.isi.pegasus.planner.partitioner.graph - package edu.isi.pegasus.planner.partitioner.graph
edu.isi.pegasus.planner.provenance - package edu.isi.pegasus.planner.provenance
edu.isi.pegasus.planner.provenance.pasoa - package edu.isi.pegasus.planner.provenance.pasoa
edu.isi.pegasus.planner.provenance.pasoa.pps - package edu.isi.pegasus.planner.provenance.pasoa.pps
edu.isi.pegasus.planner.provenance.pasoa.producer - package edu.isi.pegasus.planner.provenance.pasoa.producer
edu.isi.pegasus.planner.provisioner - package edu.isi.pegasus.planner.provisioner
edu.isi.pegasus.planner.ranking - package edu.isi.pegasus.planner.ranking
edu.isi.pegasus.planner.refiner - package edu.isi.pegasus.planner.refiner
edu.isi.pegasus.planner.refiner.cleanup - package edu.isi.pegasus.planner.refiner.cleanup
edu.isi.pegasus.planner.refiner.createdir - package edu.isi.pegasus.planner.refiner.createdir
edu.isi.pegasus.planner.selector - package edu.isi.pegasus.planner.selector: Provides the interface and call-out to the site selector mechanism.
edu.isi.pegasus.planner.selector.replica - package edu.isi.pegasus.planner.selector.replica
edu.isi.pegasus.planner.selector.site - package edu.isi.pegasus.planner.selector.site
edu.isi.pegasus.planner.selector.site.heft - package edu.isi.pegasus.planner.selector.site.heft
edu.isi.pegasus.planner.selector.transformation - package edu.isi.pegasus.planner.selector.transformation
edu.isi.pegasus.planner.transfer - package edu.isi.pegasus.planner.transfer
edu.isi.pegasus.planner.transfer.implementation - package edu.isi.pegasus.planner.transfer.implementation
edu.isi.pegasus.planner.transfer.refiner - package edu.isi.pegasus.planner.transfer.refiner
edu.isi.pegasus.planner.transfer.sls - package edu.isi.pegasus.planner.transfer.sls
edu.isi.pegasus.planner.visualize - package edu.isi.pegasus.planner.visualize
edu.isi.pegasus.planner.visualize.nodeusage - package edu.isi.pegasus.planner.visualize.nodeusage
edu.isi.pegasus.planner.visualize.spaceusage - package edu.isi.pegasus.planner.visualize.spaceusage
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Boot: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.CPU: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Load: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Machine: element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Proc: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.RAM: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Stamp: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Swap: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Task: The element name
ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Uname: The element name
elementStack - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
Empty - Class in edu.isi.pegasus.planner.provenance.pasoa.pps: The default empty implementation to be used.
Empty() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
EMPTY_DIRECTORY_SIZE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The size of an empty directory as reported by du -s
EMPTY_FINAL_WORKFLOW_MESSAGE - Static variable in class edu.isi.pegasus.planner.client.CPlanner: The final successful message that is to be logged.
EMPTY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace: The key value is empty .
emptyKey(String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Deletes the key from the namespace.
enable(AggregatedJob, boolean) - Method in interface edu.isi.pegasus.planner.code.GridStart: Enables a job to run on the grid.
enable(Job, boolean) - Method in interface edu.isi.pegasus.planner.code.GridStart: Enables a job to run on the grid.
enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Enables a constituentJob to run on the grid.
enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Enables a constituentJob to run on the grid by launching it through kickstart.
enable(Job, boolean, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Enables a constituentJob to run on the grid by launching it through kickstart.
enable(AggregatedJob, Collection) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Enables a collection of jobs and puts them into an AggregatedJob.
enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Enables a job to run on the grid.
enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Enables a job to run on the grid by launching it directly.
enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Enables a job to run on the grid.
enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Enables a job to run on the grid by launching it directly.
enableForWorkerNodeExecution(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Enables jobs for worker node execution.
END_POSTFIX - Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
endDocument() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
endDocument() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
endDocument() - Method in class edu.isi.pegasus.planner.client.DAXValidator
endDocument() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
endDocument() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Here we have all the elements in our data structure.
endDocument() - Method in class edu.isi.pegasus.planner.parser.InvocationParser: The parser comes to the end of the document.
endDocument() - Method in class edu.isi.pegasus.planner.parser.Parser: This is called automatically when the end of the XML file is reached.
endDocument() - Method in class edu.isi.pegasus.planner.parser.PDAXParser: This is called automatically when the end of the XML file is reached.
endDocument() - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
endElement() - Method in class edu.isi.pegasus.common.util.XMLWriter
endElement(int) - Method in class edu.isi.pegasus.common.util.XMLWriter
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: The parser is at the end of an element.
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.client.DAXValidator
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Overrides the default implementation when the elements end tag comes.
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: The parser is at the end of an element.
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.Parser: An empty implementation is provided by DefaultHandler class.
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser: An empty implementation is provided by DefaultHandler class.
endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: The parser is at the end of an element.
endPrefixMapping(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: Out of the reach of the prefix, remove it from the HashMap.
endWorkflowRefinementStep(Refiner) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty: endWorkflowRefinementStep
endWorkflowRefinementStep(Refiner) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
ENGAGE_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The name of the ENGAGE VO
Engine - Class in edu.isi.pegasus.planner.refiner: The class which is a superclass of all the various Engine classes.
Engine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.Engine: A pratically nothing constructor !
enter(String, String) - Method in class edu.isi.pegasus.planner.client.RCClient: Adds a preference to the instance preferences settings.
entryIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns an iterator to SiteCatalogEntry objects in the store.
entryNotInTC(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Determines whether there is NOT an entry in the transformation catalog for a particular transformation on a particular site.
entryNotInTC(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
entryNotInTC(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
entryNotInTC(String) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
env - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
ENV - Static variable in class edu.isi.pegasus.planner.classes.Profile
ENV - Class in edu.isi.pegasus.planner.namespace: The environment namespace, that puts in the environment variables for the transformation that is being run, through Condor.
ENV() - Constructor for class edu.isi.pegasus.planner.namespace.ENV: The default constructor.
ENV(Map) - Constructor for class edu.isi.pegasus.planner.namespace.ENV: The overloaded constructor.
ENV_APP_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_APP_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_DATA_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_DATA_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_DEFAULT_SE_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_DEFAULT_SE_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_GLEXEC_LOCATION_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_GLEXEC_LOCATION_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_GLOBUS_LOCATION_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_GLOBUS_LOCATION_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_GRID_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_GRID_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_HOSTNAME_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_HOSTNAME_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_JOB_CONTACT_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_JOB_CONTACT_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_LOCATION_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_LOCATION_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_SITE_NAME_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_SITE_NAME_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_SITE_READ_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_SITE_READ_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_SITE_WRITE_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_SITE_WRITE_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_SQUID_LOCATION_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_SQUID_LOCATION_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_STORAGE_ELEMENT_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_STORAGE_ELEMENT_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
ENV_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
ENV_WN_TMP_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
ENV_WN_TMP_TAG - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envApp - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envData - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envDefaultSe - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
EnvEntry - Class in edu.isi.pegasus.planner.invocation: This class pushes an environmental entry into the environment map.
EnvEntry() - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry: Default c'tor: Construct a hollow shell and allow further information to be added later.
EnvEntry(String) - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry: C'tor: Prepares a given key for accepting a value later on.
EnvEntry(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry: C'tor: Fully initializes the class
envGlexecLocation - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envGlobusLocation - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envHostName - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
Environment - Class in edu.isi.pegasus.planner.invocation: This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
Environment() - Constructor for class edu.isi.pegasus.planner.invocation.Environment: Default c'tor: Construct a hollow shell and allow further information to be added later.
ENVIRONMENT_INFO_ID - Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
environmentInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
envJobContact - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envLocation - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envSiteName - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envSiteRead - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envSiteWrite - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envSquidLocation - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envStorageElement - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
envVariables - Variable in class edu.isi.pegasus.planner.classes.Job: To accomodate the environment variables which might needed to be set.
envWnTmp - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Check if the system information matches.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Matches two ReplicaCatalogEntry objects.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: Checks if an object is similar to the one referred to by this class.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: Checks if an object is similar to the one referred to by this class.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch: Compares if a given Arch object is equal to this.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os: Compares if a given Os object is equal to this.
equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Check if the system information matches.
equals(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Compares two catalog entries for equality.
equals(Object) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns whether two objects are equal or not on the basis of the complete name of the transformation.
equals(Object) - Method in class edu.isi.pegasus.planner.classes.Job: Checks if an object is similar to the one referred to by this class.
equals(Object) - Method in class edu.isi.pegasus.planner.classes.PCRelation: Checks if an object is similar to the one referred to by this class.
equals(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Checks if an object is similar to the one referred to by this class.
equals(Object) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Executable
equals(Object) - Method in class edu.isi.pegasus.planner.dax.File: Check if this File is equal to Object o
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Parent
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Transformation
equals(Object) - Method in class edu.isi.pegasus.planner.provisioner.Node
equals(Object) - Method in class edu.isi.pegasus.planner.ranking.Ranking
err - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
err - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
error(SAXParseException) - Method in class edu.isi.pegasus.planner.client.DAXValidator
error(SAXParseException) - Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler: Logs the error messages which SAX parser generates while validating the XML file against an XML Schema
ERROR_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate an ERROR message.
ERROR_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate an ERROR message.
errorMessage(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Constructs an error message in case of style mismatch.
Escape - Class in edu.isi.ikcap.workflows.util.logging: This class tries to define an interface to deal with quoting, escaping, and the way back.
Escape() - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape: Defines the default quoting and escaping rules, escaping the apostrophe, double quote and backslash.
Escape(String, char) - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape: Constructs arbitrary escaping rules.
Escape(String, char, boolean) - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape: Constructs arbitrary escaping rules.
escape(String) - Method in class edu.isi.ikcap.workflows.util.logging.Escape: Transforms a given string by escaping all characters inside the quotable characters set with the escape character.
escape - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
Escape - Class in edu.isi.pegasus.common.util: This class tries to define an interface to deal with quoting, escaping, and the way back.
Escape() - Constructor for class edu.isi.pegasus.common.util.Escape: Defines the default quoting and escaping rules, escaping the apostrophe, double quote and backslash.
Escape(String, char) - Constructor for class edu.isi.pegasus.common.util.Escape: Constructs arbitrary escaping rules.
escape(String) - Method in class edu.isi.pegasus.common.util.Escape: Transforms a given string by escaping all characters inside the quotable characters set with the escape character.
escape(String) - Static method in class edu.isi.pegasus.common.util.XMLOutput: Escapes certain characters inappropriate for textual output.
escape(String) - Method in class edu.isi.pegasus.planner.client.RCClient: Escapes quotes and backslashes by backslashing them.
escapeXML(String) - Static method in class edu.isi.pegasus.common.util.XMLWriter
ESSENTIAL_POST_SCRIPT_SCOPE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The postscript mode in which post scripts are added only for essential jobs.
estimate() - Method in class edu.isi.pegasus.planner.provisioner.Estimator: Estimate the number of processors and return the value.
Estimator - Class in edu.isi.pegasus.planner.provisioner: This Estimator is used to find the near-optimal number of processors required to complete workflow within a given RFT(requested finish time).
Estimator(String, String, long, int) - Constructor for class edu.isi.pegasus.planner.provisioner.Estimator: Constructor
evalWeight() - Method in class edu.isi.pegasus.planner.provisioner.Node: return execution time of this task
Event - Interface in edu.isi.pegasus.common.logging
EVENT_DC_ADD_DATASOURCE_LOCATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_AUGMENT_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_CHARACTERIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_CHARACTERIZE_STATUS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_CHARACTERIZE_STATUSES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_DATASOURCE_EXISTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_DISSEMINATE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_ALL_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_ALL_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_AUGMENTED_TYPES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DATASOURCE_DESCRIPTION_FOR_UUID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DATASOURCE_LOCATIONS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DATASOURCE_UUID_FOR_DESCRIPTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_DMO_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_INGEST_STATUS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_INGEST_TIME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_SATURATED_TYPES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_GET_UNCHARACTERIZED_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_INGEST_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_REGISTER_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_REMOVE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_REMOVE_DATASOURCE_LOCATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_RICH_CHARACTERIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_SATURATE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_SET_DATASOURCE_DESCRIPTION_FOR_UUID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_DC_UPDATE_INGEST_MAP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_ENSEMBLE_EXECUTE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_ENSEMBLE_PLANNING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_ENSEMBLE_RANKING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_ENSEMBLE_WG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_ID_KEY - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_ID_KEY - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_INFER_TEMPLATE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
EVENT_PEGASUS_ADD_TRANSFER_NODES - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_ADDCLEANUP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_ADDDATASTAGING - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_ADDREGISTRATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_AUTHENTICATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_CLUSTER - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_CLUSTER - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_CODE_GENERATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_GENERATE_CLEANUP - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_GENERATE_CLEANUP_WF - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_GENERATE_WORKDIR - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_GENERATECLEANUP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_LOAD_TRANSIENT_CACHE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_PARSE_DAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_PARSE_PDAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_PARSE_SITE_CATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_PARTITION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_PLAN - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_PLAN - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_RANKING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_RANKING_RETRIEVE_DAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_REDUCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_REDUCE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_REFINEMENT - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_PEGASUS_SITESELECTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_PEGASUS_SITESELECTION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_QUERY_DATACATALOG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_QUERY_DATACATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_QUERY_PROCESSCATALOG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_QUERY_PROCESSCATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EVENT_RANKING - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_BACKWARD_SWEEP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_CONFIGURE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_DATA_SELECTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_FETCH_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_FORWARD_SWEEP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_GET_CANDIDATE_SEEDS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_GET_DAX - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_INITIALIZE_DC - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_INITIALIZE_PC - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_LOAD_SEED - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WG_SPECIALIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
EVENT_WORKFLOW_JOB_STATUS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
EventLogMessage - Class in edu.isi.ikcap.workflows.util.logging: This is a modification of gov.lbl.netlogger.LogMessage This class lets you easily construct a set of typed (name, value) pairs that formats itself as a CEDPS Best Practices log message.
EventLogMessage(String) - Constructor for class edu.isi.ikcap.workflows.util.logging.EventLogMessage: Create a new LogMessage at the current time with a given event name.
EventLogMessage.Log4jFilter - Class in edu.isi.ikcap.workflows.util.logging: In log4j, ignore all messages not specifically directed at this appender.
EventLogMessage.Log4jFilter() - Constructor for class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
examined - Variable in class edu.isi.pegasus.planner.provisioner.Node
ExampleDAXCallback - Class in edu.isi.pegasus.planner.parser.dax: An example callback that prints out the various elements in the DAX.
ExampleDAXCallback(PegasusProperties, String) - Constructor for class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: The overloaded constructor.
exec_jm - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
exec_jm - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
executable - Variable in class edu.isi.pegasus.planner.classes.Job: The path of the executable on the machine at which the job is executed.
Executable - Class in edu.isi.pegasus.planner.client: The interface which defines all the methods , any executable should implement.
Executable() - Constructor for class edu.isi.pegasus.planner.client.Executable: The default constructor.
Executable(LogManager) - Constructor for class edu.isi.pegasus.planner.client.Executable: The constructor which ends up initialising the PegasusProperties object.
Executable - Class in edu.isi.pegasus.planner.dax: The Transformation Catalog object the represent the entries in the DAX transformation section.
Executable(String) - Constructor for class edu.isi.pegasus.planner.dax.Executable: Create a new executable
Executable(Executable) - Constructor for class edu.isi.pegasus.planner.dax.Executable: Copy Constructor
Executable(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Executable: Create a new Executable
Executable.ARCH - Enum in edu.isi.pegasus.planner.dax: ARCH Types
Executable.ARCH() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.ARCH
Executable.OS - Enum in edu.isi.pegasus.planner.dax: OS Types
Executable.OS() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.OS
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: The basename of the executable that is able to run multiple jobs via mpi.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: The basename of the pegasus cluster executable.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The basename of the kickstart executable.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The basename of the pegasus cleanup executable.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The basename of the pegasus cleanup executable.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer: The executable basename for the transfer executable.
EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The executable basename
EXECUTABLE_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile: The type denoting that a logical file is a executable file.
EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the key that denotes the executable of the job.
EXECUTABLE_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile: The string value of a file that is of type executable.
execute() - Method in class VersionTask: Executes the ant task, and populates the environmental properties for the current project.
executeCommand() - Method in class edu.isi.pegasus.planner.client.CPlanner: Executes the command on the basis of the options specified.
executeCommand(PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner: Executes the command on the basis of the options specified.
executeCommand() - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode: Executes the command on the basis of the options specified.
executeCommand() - Method in class edu.isi.pegasus.planner.client.PartitionDAX: Executes the partition dax on the basis of the options given by the user.
executeCommand() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites: Executes the command on the basis of the command line options passed.
executeCommand() - Method in class edu.isi.pegasus.planner.client.PlotNodeUsage: Executes the command on the basis of the options specified.
executeCommand() - Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage: Executes the command on the basis of the options specified.
executeCommand() - Method in class edu.isi.pegasus.planner.client.RankDAX: Executes the command on the basis of the options specified.
executeCommand() - Method in class edu.isi.pegasus.planner.client.SCClient: Call the correct commands depending on options.
executeCommand() - Method in class edu.isi.pegasus.planner.client.TCClient: Call the correct commands depending on options.
executeCommand() - Method in class edu.isi.pegasus.planner.client.TCConverter: Call the correct commands depending on options.
executeCommand() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Executes the command on the basis of the options specified.
executeOnWorkerNode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whether to have jobs executing on worker node tmp or not.
EXECUTION_POOL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints: The execution pool key
executionPool - Variable in class edu.isi.pegasus.planner.classes.Job: The pool on which this job has been decided to be executed by the Interpool Engine.
executionToHintsNamespace(String) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Maps the execution key to corresponding key in hints namespace.
ExitCode - Class in edu.isi.pegasus.planner.client: This class gets the exit code of a job from invocation record.
ExitCode(String) - Constructor for class edu.isi.pegasus.planner.client.ExitCode: ctor: Constructs a new instance object with the given application name.
ExitCode - Class in edu.isi.pegasus.planner.code.gridstart: The exitcode wrapper, that can parse kickstart output's and put them in the database also.
ExitCode() - Constructor for class edu.isi.pegasus.planner.code.gridstart.ExitCode: The default constructor.
EXITCODE_OUTPUT_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The suffix for the exitcode output file, that is generated at the submit host.
ExitPOST - Class in edu.isi.pegasus.planner.code.gridstart: A wrapper around the Exitcode, that takes care of backing up output and error files.
ExitPOST() - Constructor for class edu.isi.pegasus.planner.code.gridstart.ExitPOST: The default constructor.
extractToMemory(File) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer: Copy the content of the file into memory.
extractVersionFromSchema(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Determines the version of the DAX as specified in a schema string.

F

FactoryException - Exception in edu.isi.pegasus.common.util: The base exception class to notify of errors, while instantiating classes via any of the factories.
FactoryException(String) - Constructor for exception edu.isi.pegasus.common.util.FactoryException: Constructs a FactoryException with no detail message.
FactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.util.FactoryException: Constructs a FactoryException with the specified detailed message.
FactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.util.FactoryException: Constructs a FactoryException with the specified detailed message and a cause.
FactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.util.FactoryException: Constructs a FactoryException with the specified detailed message and a cause.
FAKE_DATE - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
FALSE - Static variable in class edu.isi.pegasus.common.util.Boolean: The character representation of a false value.
FATAL_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate a FATAL error message.
FATAL_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate a FATAL error message.
fatalError(SAXParseException) - Method in class edu.isi.pegasus.planner.client.DAXValidator
fatalError(SAXParseException) - Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler: Logs the the fatal messages which SAX parser generates while validating the XML file against an XML Schema
Fifo - Class in edu.isi.pegasus.planner.invocation: This class is the container for a FIFO object.
Fifo() - Constructor for class edu.isi.pegasus.planner.invocation.Fifo: Default c'tor: Construct a hollow shell and allow further information to be added later.
Fifo(String, int) - Constructor for class edu.isi.pegasus.planner.invocation.Fifo: Constructs a FIFO object.
file - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
File - Class in edu.isi.pegasus.planner.catalog.transformation.impl: This is the new file based TC implementation storing the contents of the file in memory.
File() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.File
File() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The default constructor.
file - Variable in class edu.isi.pegasus.planner.client.TCClient
File - Class in edu.isi.pegasus.planner.dax: This class is the container for any File object, either the RC section, or uses
File(File) - Constructor for class edu.isi.pegasus.planner.dax.File: Copy constructor
File(File, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File: Copy constructor, but change the linkage of the file.
File(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.File: Create new File object
File(String) - Constructor for class edu.isi.pegasus.planner.dax.File: Create new file object
File(String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File: Create new file object
File(String, String, String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File: Create a new file object
File - Class in edu.isi.pegasus.planner.invocation: This class is the base class for a file object.
File() - Constructor for class edu.isi.pegasus.planner.invocation.File: Default c'tor: Construct a hollow shell and allow further information to be added later.
File(String) - Constructor for class edu.isi.pegasus.planner.invocation.File: C'tor: Constructs the value in the base class.
File.LINK - Enum in edu.isi.pegasus.planner.dax: The linkages that a file can be of
File.LINK() - Constructor for enum edu.isi.pegasus.planner.dax.File.LINK
File.TRANSFER - Enum in edu.isi.pegasus.planner.dax: Three Transfer modes supported, Transfer this file, don't transfer or stageout as well as optional.
File.TRANSFER() - Constructor for enum edu.isi.pegasus.planner.dax.File.TRANSFER
FILE_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
FILE_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter: The File format.
FILE_OUTPUT_CONTENTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
FILE_OUTPUT_CONTENTS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
FILE_OUTPUT_NAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
FILE_OUTPUT_NAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
FILE_PRIORTY - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
FILE_PRIORTY - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
FILE_SYSTEM_DOMAIN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the key that denotes the File System Domain.
FILE_TYPE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
FILE_TYPE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
FILE_URL_SCHEME - Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.selector.replica.Default: The scheme name for file url.
FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.planner.selector.replica.Local: The scheme name for file url.
fileName - Variable in class edu.isi.pegasus.planner.provisioner.Edge
fileName - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
fileOptional() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns optionalflag denoting the file to be optional or not.
FileServer - Class in edu.isi.pegasus.planner.catalog.site.classes: This class describes a file server that can be used to stage data to and from a site.
FileServer() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServer: The default constructor.
FileServer(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServer: Overloaded constructor.
FileServerType - Class in edu.isi.pegasus.planner.catalog.site.classes: An abstract class that describes a file server that can be used to stage data to and from a site.
FileServerType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: The default constructor.
FileServerType(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Overloaded constructor.
fileSize - Variable in class edu.isi.pegasus.planner.provisioner.Edge
FileSystemType - Class in edu.isi.pegasus.planner.catalog.site.classes: An abstract class describing a filesystem type.
FileSystemType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: The default constructor.
FileSystemType(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: The overloaded constructor.
FileTransfer - Class in edu.isi.pegasus.planner.classes: This is a container for the storing the transfers that are required in between sites.
FileTransfer() - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer: Default constructor.
FileTransfer(PegasusFile) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer: The overloaded constructor.
FileTransfer(String, String) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer: The overloaded constructor.
FileTransfer(String, String, BitSet) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer: The overloaded constructor.
fillArgs(Map) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.Client: Takes the arguments from the TCClient and stores it for acess to the other TC Client modules.
finalize() - Method in class edu.isi.pegasus.common.util.StreamGobbler: Closes the open connections to the streams whenever this object is destroyed.
finalize() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Closes the connection to the rli.
findExec(String) - Static method in class edu.isi.pegasus.common.util.FindExecutable: Finds the path to an executable of a given name , based on the value of PATH environment variable.
FindExecutable - Class in edu.isi.pegasus.common.util: A convenice class that allows us to determine the path to an executable
FindExecutable() - Constructor for class edu.isi.pegasus.common.util.FindExecutable
firstPass(Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: If a job is deleted it marks all the relations related to that job as deleted
flowID - Variable in class edu.isi.pegasus.planner.classes.DagInfo: It is a unique identifier identifying the concrete DAG generated by Pegasus.
flowIDName - Variable in class edu.isi.pegasus.planner.classes.DagInfo: It is the name of the dag as generated by Chimera in the dax.
FORK_JOBMANAGER_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The jobmanager type associated with the transfer jobs.
format - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
FREE_MEM - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the free memory .
FREE_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The constant to be passed to the accessor functions to get or set the free size.
FREE_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir: The constant to be passed to the accessor functions to get or set the free space available.
fromNode - Variable in class edu.isi.pegasus.planner.provisioner.Edge
fromString(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch: Creates a new Arch object given a arch string.
fromString(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os: Creates a new Os object given an os string.
fromValue(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch: Creates a new Arch Object givan a arch string.
fromValue(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os: Creates a new Os object given an os string.
ftToRC(FileTransfer) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Converts a FileTransfer to a RC compatible string representation.
full_where() - Method in class edu.isi.pegasus.planner.client.DAXValidator
full_where() - Method in class edu.isi.pegasus.planner.parser.InvocationParser

G

gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
Gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
gatekeeper - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
generate(PrintWriter, ADag) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: Writes out the classads for a workflow to corresponding writer stream.
generate(PrintWriter, ADag, Job) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: Writes out the classads for a job to corresponding writer stream.
GENERATE_SUBDAG_KEYWORD - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Whether to generate the SUBDAG keyword or not.
generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
generateCallToCheckExitcode(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Generates a call to check_exitcode function that is used
generateCallToExecuteJob(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Generates a call to execute_job function , that is used to launch a job from the shell script.
generateCallToExecutePostScript(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Generates a call to execute_post_script function , that is used to launch a job from the shell script.
generateClassAdAttribute(String, String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: Generates a classad attribute given the name and the value.
generateClassAdAttribute(String, int) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: Generates a classad attribute given the name and the value.
generateClassAdAttribute(String, String, boolean) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: Generates a classad attribute given the name and the value.
generateCleanUPDAG() - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: Generates a cleanup DAG for the dag associated with the class.
generateCleanUPDAG(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: Generates a cleanup DAG for the dag object passed.
generateCleanupID(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Returns the identifier that is to be assigned to cleanup job.
generateCode(ADag) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator: Generates the code for the concrete workflow in the input format of the workflow executor being used.
generateCode(ADag, Job) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator: Generates the code for a single job in the input format of the workflow executor being used.
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
generateCode(ADag, Map<String, String>) - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Method not implemented.
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Generates the code for the concrete workflow in Condor DAGMAN and CondorG input format.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Generates the code (condor submit file) for a single job.
generateCode(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Generates code for a job
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Generates the notifications input file.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Not implemented
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Metrics: Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Metrics: Method not implemented.
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify: Generates the notifications input file.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify: Not implemented
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Generates the code for the concrete workflow in the GRMS input format.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Generates the code for a single job in the input format of the workflow executor being used.
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Method not implemented.
generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork: Generates the code for the concrete workflow in the input format of the workflow executor being used.
generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork: Generates the code for a single job in the Stork format.
generateEventsForDAXTask(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Generates stampede events corresponding to jobs/tasks in the DAX
generateEventsForExecutableJob(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Generates stampede events corresponding to an executable job
generateFlowID() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Generates the flow id for this current run.
generateFlowName() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Generates the name of the flow.
generateKickstartExtraOptions() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whehter to pass extra options to kickstart or not.
generateList(String) - Method in class edu.isi.pegasus.planner.client.RankDAX: Generates a List by parsing a comma separated string.
generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Writes out the list of filenames file for the constituentJob.
generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Writes out the list of filenames file for the job.
generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Writes out the list of filenames file for the job.
generateLOFFiles() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Return a boolean indicating whether to generate the LOF files for the jobs or not.
generateLogEvent(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper: Generates a log event message in the netlogger format for a job
generateLogFileSymlink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: This method generates a symlink to the actual log file written in the local temp directory.
generateMappingsFile(String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Generates the registration mappings in a text file that is generated in the dax directory (the directory where all the condor submit files are generated).
generateMask(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default: Generates the appropriate mask value, corresponding to the level passed.
generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob: Generates a name for the job that serves as the primary id for the job
generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob: Generates a name for the job that serves as the primary id for the job
generateRandomDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns whether to generate a random directory or not.
generateRandomDirectory() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns whether we want to create a Random Directory or not.
generateRepJobArgumentString(SiteCatalogEntry, String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Generates the argument string to be given to the replica registration job.
generateScriptFile(String, String, String, float, float) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: Generates the script file required to give as input to ploticus.
generateScriptFile(String, String, String, float, float) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: Generates the script file required to give as input to ploticus.
generateSet(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Generates a Set by parsing a comma separated string.
generateSRMProperties() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Generates SRM properties that can be used by Pegasus to do SRM URL substitution for the case where all the data is accessible on the worker nodes locally.
generateSRMProperties(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Generates SRM properties that can be used by Pegasus to do SRM URL substitution for the case where all the data is accessible on the worker nodes locally for a particular site.
generateStampedeEventsForAbstractWorkflow(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.client.CPlanner: Generates events for the abstract workflow.
generateTaskMapEvents(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Generates the task.map events that link the jobs in the DAX with the jobs in the executable workflow
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.CPlanner: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.Executable: Generates an array of valid LongOpt objects which contain all the valid options to the Executable.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.ExitCode: Creates a set of options.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PartitionDAX: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites: Generates valid LongOpts.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PlotNodeUsage: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RankDAX: It generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RCClient: Creates a set of GNU long options.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.SCClient
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCClient
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCConverter: Generates the list of valid options for the tc-converter client
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Tt generates the LongOpt which contain the valid options that the command will accept.
generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VersionNumber: Creates a set of options.
generateWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag: Generates the UUID for the workflow
GENERATOR - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The name of the generator.
GENERATOR_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The complete classad designating Pegasus as the generator.
GENERATOR_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The Key designating type of Pegasus Code Generator.
get(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: Returns the implementation from the implementing class table.
get(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the namespace object corresponding to a namespace
get(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Retrives the information about a site.
get(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag: Returns an objects corresponding to the key passed.
get(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns an entry corresponding to the LFN
get(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: Returns the implementation from the implementing class table.
get(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: Returns the implementation from the implementing class table.
get(String) - Method in class edu.isi.pegasus.planner.invocation.Environment: Retrieves the value for a given key
get(String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo: Returns attribute value for a key
get(Object) - Method in class edu.isi.pegasus.planner.namespace.ENV: Returns the value to which this namespace maps the specified key.
get(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Returns the value to which this namespace maps the specified key.
get(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Returns the value to which this namespace maps the specified key.
get(Object) - Method in class edu.isi.pegasus.planner.namespace.Selector: Returns the value to which this namespace maps the specified key.
get(Object) - Method in class edu.isi.pegasus.planner.namespace.Stat: Returns the value to which this namespace maps the specified key.
get(Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: It returns the value associated with the key in the map.
get(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Returns the GraphNode of the corresponding id.
get(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag: Returns an objects corresponding to the key passed.
get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: Returns an objects corresponding to the key passed.
get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: It returns the value associated with the key in the map.
get(String, String) - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Given a request ID it fetches the DAX's from the DB and writes out to the directory passed.
get(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: For all keys returns the boolean value
get(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: Returns an objects corresponding to the key passed.
get(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Returns the TPT state for a particular site.
get(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState: Returns a boolean indicating whether the attribute passed is set in the transfer state or not.
get(String) - Method in class edu.isi.pegasus.planner.transfer.TPT: Returns the TPT state for a particular site.
get(int) - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState: Returns a boolean indicating whether the attribute passed is set in the transfer state or not.
GET_ENV_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The condor key for using the local environment
get_sites_in_grid(String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
get_sites_info(String, String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
getAbsolutePath(String) - Static method in class edu.isi.pegasus.planner.common.Utility: It returns the absolute path of the url.
getAbsolutePath(Partition, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the absolute path to a dagman (usually) related file for a particular partition in the submit directory that is passed as an input parameter.
getAbstractChildID() - Method in class edu.isi.pegasus.planner.classes.PCRelation: Returns the abstract child id associated with the edge.
getAbstractJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Returns an abstract Job with id ajobid if present otherwise null.
getAbstractParentID() - Method in class edu.isi.pegasus.planner.classes.PCRelation: Returns the abstract parent id associated with the edge.
getAbstractWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the workflow id
getAccessTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract: Returns a Map containing additional metrics entries that are specific to a Code Generator
getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns a Map containing additional braindump entries that are specific to a Code Generator.
getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Returns a Map containing additional braindump entries that are specific to a Code Generator
getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork: Returns an empty map
getAliasIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Returns an iterator to aliases associated with the site.
getAllEntries() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns all the entries in the Transformation Store
getAllIgnoredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a comma separated list of sites, from which to ignore data transfers for all sites.
getAllPreferredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a comma separated list of sites, from which to prefer data transfers for all sites.
getAncET() - Method in class edu.isi.pegasus.planner.provisioner.Node
getAncSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
getApp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getApp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getApp_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getApp_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getArch() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Returns the architecture of the sytem.
getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the architecture of the site.
getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the architecture of the nodes that this grid gateway talks to.
getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the architecture of the site.
getArchitecture() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the architecture the Executable is compiled for
getArchitecture() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getArchMode() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getArguments() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the argument string with which the job has to be invoked.
getArguments() - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Return the argument List.
getArguments() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getAssociatedJob() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the associated job.
getAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Obtains the attribute value for a given key.
getAttributeCount() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Counts the number of attributes known for the PFN.
getAttributeIterator() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Provides an iterator to traverse the attributes by their keys.
getAttributeKeysIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo: Returns Iterator for attribute keys.
getAvailableProcessors() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site: Returns the number of available processors.
getAvailableTime(String, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Returns the available time for a site.
getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Processor: Returns the earliest time the processor is available for scheduling a job.
getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Site: Returns the earliest time the site is available for scheduling a job.
getBag() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns the bag of objects associated with the node.
getBaseName() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: returns the basename of the credential file name
getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Irods: returns the basename of the path to the local credential
getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Proxy: returns the basename of the path to the local credential
getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG: returns the basename of the path to the local credential
getBaseName() - Method in class edu.isi.pegasus.common.credential.impl.Ssh: returns the basename of the path to the local credential
getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: A covenience method to construct the basename.
getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns the basename of a dagman (usually) related file for a particular partition.
getBaseName(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the base name of the submit directory in which the submit files for a particular partition reside.
getBasename(Partition, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the basename of a dagman (usually) related file for a particular partition.
getBasename(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Returns the basename of the URL using substring.
getBasenamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the basename prefix for the per workflow files that are to be generated by the planner.
getBasenamePrefix(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the basename prefix of a dagman (usually) related file for a a job that submits nested dagman.
getBaseSourceURLForSetupTransfers() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the base source URL where pointing to the directory where the worker package executables for pegasus releases are kept.
getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the root of submit directory hierarchy for the workflow.
getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the path to the base submit directory.
getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the base submit directory
getBinDir() - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor pegasus bin directory
getBinDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Accessor to the bin directory of the Pegasus install
getBinPackingComparator() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: The comparator is used to sort a collection of jobs in decreasing order of their run times as specified by the Pegasus.JOB_RUN_TIME property.
getBlocks() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getBlockSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Condor: Returns a boolean value, that a particular key is mapped to in this namespace.
getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Returns a boolean value, that a particular key is mapped to in this namespace.
getBooleanValue() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: Returns the boolean value
getCacheFileName(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs the basename to the cache file that is to be used to log the transient files.
getCacheFileName(ADag) - Method in class edu.isi.pegasus.planner.refiner.MainEngine: Constructs the basename to the cache file that is to be used to log the transient files.
getCacheFilePath(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the full path to a cache file that corresponds for one partition.
getCacheFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the cache files.
getCacheFiles() - Method in class edu.isi.pegasus.planner.common.UserOptions: It returns the set of cache files.
getCategoryDAGManKnobs(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Write out the DAGMan knobs for each category the user mentions in the properties.
getCE(List<MYOSGSiteServiceInfo>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade: Returns the compute element(CE)
getCERequirementsForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite: Constructs the value for remote CE requirements expression for the job .
getChild() - Method in class edu.isi.pegasus.planner.classes.PCRelation: Returns the child in the edge.
getChildren(String) - Method in class edu.isi.pegasus.planner.classes.ADag: Get all the children of a particular node.
getChildren(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Get all the children of a particular node.
getChildren() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns a list of GraphNode objects that are children of the node.
getChildren(String) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: Gets all the children of a particular node.
getChmodDisabledSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the list of sites for which the chmod job creation has to be disabled for executable staging.
getClassName() - Method in class edu.isi.pegasus.common.util.DynamicLoader: Obtains the fully-qualified class name that this instance works with.
getClassname() - Method in exception edu.isi.pegasus.common.util.FactoryException: Returns the name of the class that was trying to be loaded when this error occured, or some other signifier like a module name.
getClassPath(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Returns the classpath for the default rc-client entry.
getCleanup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the option indicating whether to do cleanup or not.
getCleanupDAG() - Method in class edu.isi.pegasus.planner.refiner.MainEngine: Returns the cleanup dag for the concrete dag.
getCleanupFlag() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns boolean indicating whether the space denoted is the amount cleaned or not.
getCleanupImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the name of the class that the user wants, to render the cleanup jobs.
getCleanupJobname(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: It returns the name of the untar job, that is to be assigned.
getCleanupScope() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the scope for file cleanup.
getCleanupStrategy() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the name of the Strategy class that the user wants, to insert the cleanup jobs in the graph.
getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the clustered workflow.
getClusteredDAG() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer: Returns the clustered workflow.
getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Returns the clustered workflow.
getClustererLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the key that is to be used as a label key, for labelled clustering.
getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Returns the executable basename of the clustering executable used.
getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Returns the executable basename of the clustering executable used.
getClusterExecutableBasename() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Returns the executable basename of the clustering executable used.
getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Returns the logical name of the transformation that is used to collapse the jobs.
getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Returns the logical name of the transformation that is used to collapse the jobs.
getClusterExecutableLFN() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Returns the logical name of the transformation that is used to collapse the jobs.
getClusteringTechnique() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the clustering technique to be used for clustering.
getCollapseFactor(String, Job, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Returns the collapse factor, that is used to chunk up the jobs of a particular type on a pool.
getCollapseFactor(String, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Returns the collapse factor, that is used to determine the number of nodes going in a partition.
getCollapseFactors() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a comma separated list for the node collapsing criteria for the execution pools.
getCommandLineOptions() - Method in class edu.isi.pegasus.planner.client.Executable: Returns the command line arguments passed to the executable
getCommandLineProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Returns the properties that need to be passed to the the rc-client invocation on the command line .
getCommentString(Job, int) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Generates the comment string for the job .
getCompleteDVName() - Method in class edu.isi.pegasus.planner.classes.Job: Constructs the fully qualified name of the corresponding derivation used to generate this job in Chimera including the namespace and version.
getCompleteName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns the complete name for the transformation.
getCompleteOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the complete options string that is used to invoke pegasus
getCompleteTCName() - Method in class edu.isi.pegasus.planner.classes.Job: Constructs the fully qualified name of a transformation with which to query the TC, including the namespace and version.
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns the complete name for the transformation that the implementation is using..
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Returns the complete name for the transformation that the implementation is using.
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns the complete name for the transformation.
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns the complete name for the transformation.
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns the complete name for the transformation.
getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns the complete name for the transformation.
getCompleteTranformationName(String) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: A convenience method to return the complete transformation name being used to construct jobs in this class.
getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: A convenience method to return the complete transformation name being used to construct jobs in this class.
getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: A convenience method to return the complete transformation name being used to construct jobs in this class.
getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Returns the bundle value associated with a compute job as a String.
getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Returns the bundle value associated with a compute job as a String.
getConcatJobname(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: Returns the name of the concat job
getCondorFileName(String, int, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: A small utility method that constructs the name of the Condor files that are generated when a dag is submitted.
getCondorFileName(String, int, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: A small utility method that constructs the name of the Condor files that are generated when a dag is submitted.
getCondorLogInSubmitDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns the path to the condor log file in the submit directory.
getCondorLogInSubmitDirectory(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns the path to the condor log file in the submit directory.
getCondorLogInTmpDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns the name of Condor log file in a tmp directory that is created if generation of symlink for condor logs is turned on.
getConfigurableParameters(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator: Parsers through the list of parameterID-value pair and returns the parameters name value pair
getConfigurationProperties(String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration: Returns Properties corresponding to a particular configuration.
getConnectionIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Returns an iterator to connection params associated with the replica catalog.
getConstituentJob(int) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Returns a job from a particular position in the list of constituent jobs
getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback: Return a object that is constructed during the parsing of the object.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Returns an ADag object corresponding to the abstract plan it has generated.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Returns a Map indexed by the logical ID of the jobs, and each value being a GraphNode object.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: Returns an ADag object corresponding to the abstract plan it has generated.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Returns the workflow represented in the Graph form.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback: Returns an ADag object corresponding to the abstract plan it has generated.
getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback: Return a object that is constructed during the parsing of the object.
getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the MEGADAG that is generated
getConstructedObject() - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Returns a List of Map objects where each map captures information in one invocation record.
getConstructedObject() - Method in interface edu.isi.pegasus.planner.visualize.Callback: Returns the object constructed.
getConstructedObject() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Returns the SpaceUsage store built.
getConstructedObject() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Returns the SpaceUsage store built.
getContact() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the contact string for the Grid gateway
getContent() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns the content associated with the node.
getContents() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback: Returns the contents captured.
getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: List all the contents of the TC
getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: List all the contents of the TC
getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: List all the contents of the TC
getContents() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: List all the contents of the TC
getCoreFlag() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal: Accessor
getCost(long, long) - Method in class edu.isi.pegasus.planner.provisioner.Edge
getCost() - Method in class edu.isi.pegasus.planner.provisioner.Edge
getCount() - Method in class edu.isi.pegasus.planner.invocation.Fifo: Accessor
getCount() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback: Returns the number of words counted so far.
getCreateDirClass() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the name of the class that the user wants, to insert the create directory jobs in the graph in case of creating random directories.
getCreateDirImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the name of the class that the user wants, to render the directory creation jobs.
getCreateDirJobExecutionSite(String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: Determines the site where the create dir job should be run , looking at the directory URL passed.
getCreateDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: It returns the name of the create directory job, that is to be assigned.
getCreateDirSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: Retrieves the sites for which the create dir jobs need to be created.
getCreateDirSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: Retrieves the sites for which the create dir jobs need to be created.
getCreationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getCredentialTypes() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the various credential types required by a job
getCredName() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the credential name to be used for the stork transfer jobs.
getCurrentNumOfJobs(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Returns the number of jobs that are executing for a particular site
getDAG(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Returns a DAG object with id dagid if present otherwise null.
getDAGFile() - Method in class edu.isi.pegasus.planner.classes.DAGJob: Returns the DAGFile the job refers to.
getDAGFilename(ADag, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner: Returns the basename of the dag file
getDAGFilename(ADag, String) - Method in class edu.isi.pegasus.planner.code.generator.Abstract: Returns the name of the file on the basis of the metadata associated with the DAG.
getDAGFilename(PlannerOptions, String, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.Abstract: Returns the name of the file on the basis of the metadata associated with the DAG.
getDAGLFN() - Method in class edu.isi.pegasus.planner.classes.DAGJob: Returns the lfn for the DAGFile the job refers to.
getDAGMANOutFilename(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns the basename of the file, that contains the output of the dagman while running the dag generated for the workflow.
getData() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getData_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getData_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getData_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getData_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getDatabaseName(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Returns the database name from the database url string
getDate() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the time at which Space was record.
getDateAfter(int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Returns the date after n days formatted as MM/dd/yyyy.
getDateFormat() - Method in class edu.isi.pegasus.common.util.Currently: Accessor: Obtains the default timestamp format for all queues.
getDateTime(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the time at which planning started in a ISO 8601 format.
getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Sets the path to the DAX.
getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the path to the dax file being used by the planner.
getDAX(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Returns a DAX object with id daxid if present otherwise null.
GetDAX - Class in edu.isi.pegasus.planner.ranking: This class is responsible for the fetching the DAX'es on the basis of the request ID's from the Windward Provenance Tracking Catalog.
GetDAX() - Constructor for class edu.isi.pegasus.planner.ranking.GetDAX: The default constructor.
getDAXCallback() - Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser: Retuns the DAXCallback for the parser
getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Retuns the DAXCallback for the parser
getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Retuns the DAXCallback for the parser
getDAXFile() - Method in class edu.isi.pegasus.planner.classes.DAXJob: Returns the DAXFile the job refers to.
getDaxFile() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns the dax file, that was generated by Chimera containing the description of the Abstract plan.
getDAXID() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Clustered jobs never originate in the DAX.
getDAXID() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the DAX ID for the job if it appeared in the DAX, else null
getDAXLFN() - Method in class edu.isi.pegasus.planner.classes.DAXJob: Returns the lfn for the DAXFile the job refers to.
getDAXMetadata(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Returns the metadata stored in the root adag element in the DAX
getDAXReplicaStoreFile(PlannerOptions, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Returns the path to the DAX Replica Store File.
getDAXSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the schema for the DAX.
getDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the schema for the DAX.
getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the dax version
getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the dax version
getDefaultBundleValueFromProperties(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Returns the default value for the clustering/bundling of jobs to be used.
getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitCode: Returns the path to exitcode that is to be used on the kickstart output.
getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.ExitPOST: Returns the path to exitcode that is to be used on the kickstart output.
getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode: Returns the path to exitcode that is to be used on the kickstart output.
getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Returns the path to exitcode that is to be used on the kickstart output.
getDefaultPathToCondorKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default path to the condor kickstart.
getDefaultPathToSC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default path to the site catalog file.
getDefaultPathToTC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default path to the transformation catalog.
getDefaultRegistrationMaxJobsPropertyKey() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Returns the property key that can be used to set the max jobs for the default category associated with the registration jobs.
getDefaultThirdPartySites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default list of third party sites.
getDefaultTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default transfer implementation to be picked up for constructing transfer jobs.
getDefaultTransferPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the default priority for the transfer jobs if specified in the properties file.
getDeletedFileTX(String, Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: This gets the file transfer objects corresponding to the location of files found in the replica mechanism, and transfers it to the output pool asked by the user.
getDeletedJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: This returns all the jobs deleted from the workflow after the reduction algorithm has run.
getDeletedJobs() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: This returns all the jobs deleted from the workflow after the reduction algorithm has run.
getDeletedLeafJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: This returns all the deleted jobs that happen to be leaf nodes.
getDeletedLeafJobs() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: This returns all the deleted jobs that happen to be leaf nodes.
getDependantFiles() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns the List of dependant files
getDepET() - Method in class edu.isi.pegasus.planner.provisioner.Node
getDeployJobName(ADag, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: It returns the name of the deployment job, that is to be assigned.
getDeploymentSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Retrieves the sites for which the deployment jobs need to be created.
getDepSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
getDepth() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
getDepth() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns the depth of the node in the graph.
getDerivation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns the logical name of the derivation that this implementation refers to.
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Returns the logical name of the derivation that this implementation refers to.
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns the logical name of the derivation that this implementation refers to.
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns the logical name of the derivation that this implementation refers to.
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns the logical name of the derivation that this implementation refers to.
getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns the logical name of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns the namespace of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Returns the namespace of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns the namespace of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns the namespace of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns the namespace of the derivation that this implementation refers to.
getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns the namespace of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns the version of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob: Returns the version of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns the version of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns the version of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns the version of the derivation that this implementation refers to.
getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns the version of the derivation that this implementation refers to.
getDescription() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: Returns the description for the implementing handler
getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Irods: Returns the description for the implementing handler
getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Proxy: Returns the description for the implementing handler
getDescription() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG: Returns the description for the implementing handler
getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Ssh: Returns the description for the implementing handler
getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns the TC implementation being used
getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Returns a textual description of the transformation mode.
getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Returns a textual description of the transformation mode.
getDescription() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Returns the TC implementation being used
getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Returns a textual description of the transfer implementation.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns a textual description of the transfer implementation.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Returns a textual description of the transfer implementation.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns a textual description of the transfer implementation.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns a textual description of the transfer implementation.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Returns a textual description of the transfer mode.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain: Returns a textual description of the transfer mode.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Returns a textual description of the transfer mode.
getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Returns a textual description of the transfer mode.
getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Returns a textual description of the transfer mode.
getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Descriptor: Accessor
getDescriptor() - Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor: Accessor: Obtains the descriptor of the file handle
getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Temporary: Accessor
getDesET() - Method in class edu.isi.pegasus.planner.provisioner.Node
getDesSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
getDestURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a single destination url associated with the transfer.
getDestURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a single destination url associated with the transfer.
getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAGJob: Returns the directory the job refers to.
getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAXJob: Returns the directory the job refers to.
getDirectory() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the directory where the job runs.
getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the directory in which the job should run.
getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Returns the directory in which the job should run.
getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the exectionSiteDirectory that is associated with the constituentJob to specify the exectionSiteDirectory in which the constituentJob needs to run
getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Returns the directory that is associated with the job to specify the directory in which the job needs to run
getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Returns the directory that is associated with the job to specify the directory in which the job needs to run
getDomainName() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getDOTColor() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the color with which DOT should color the node representing the job.
getDownLen() - Method in class edu.isi.pegasus.planner.provisioner.Node: return the DnLength of this task.
getDuration() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getDuration() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getDVName() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the name of the underlying derivation.
getDVNamespace() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the namespace of the underlying derivation.
getDVVersion() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the version of the underlying derivation.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Boot: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.CPU: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Load: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Machine: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Proc: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.RAM: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Stamp: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Swap: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Task: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.invocation.Uname: Returns the name of the xml element corresponding to the object.
getElementName() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement: Returns the element name.
getElementObject() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement: Returns the object referred to by the element.
getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event: Creates the end message for the event.
getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Creates the end message for the event on top of the stack.
getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Creates the end message for the event.
getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Creates the end message for the event.
getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Creates the end message for the event on top of the stack.
getEndTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the end time for the planning operation.
getEntries(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns List of TransformationCatalogEntry objects for a transformation on a particular site and a type.
getEntries(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns List of TransformationCatalogEntry objects for a transformation on a particular site.
getEntries(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns a list of TransformationCatalogEntry objects matching on a site and transformation type.
getEnvArrFromMap() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Generates an array of environment variables.
getEnvironment() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getEnvironmentVariable() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: Returns the name of the environment variable that needs to be set for the job associated with the credential.
getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Irods: Returns the name of the environment variable that needs to be set for the job associated with the credential.
getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Proxy: Returns the name of the environment variable that needs to be set for the job associated with the credential.
getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG: Returns the name of the environment variable that needs to be set for the job associated with the credential.
getEnvironmentVariable() - Method in class edu.isi.pegasus.common.credential.impl.Ssh: Returns the name of the environment variable that needs to be set for the job associated with the credential.
getEnvironmentVariable(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns an environment variable associated with the site.
getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns an environment variable associated with the site.
getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns an environment variable for a particular site set in the Site Catalog.
getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob: Returns the environment profiles that are required for the default entry to sensibly work.
getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Returns the environment profiles that are required for the default entry to sensibly work.
getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Returns the environment profiles that are required for the default entry to sensibly work.
getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Returns the environment profiles that are required for the default entry to sensibly work.
getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Returns the environment profiles that are required for the default entry to sensibly work.
getEnvValue(String) - Method in class edu.isi.pegasus.planner.client.Executable: Get the value of the environment variable.
getError() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure: Accessor
getError() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getEventName() - Method in interface edu.isi.pegasus.common.logging.Event: Returns the name of event that is currently associated with the log messages.
getEventName() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Returns the name of event that is currently associated with the log messages and is on the top of the stack
getEventName() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Returns the name of event that is currently associated with the log messages.
getEventName() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Returns the name of event that is currently associated with the log messages.
getEventName() - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Returns the name of event that is currently associated with the log messages and is on the top of the stack
getEventType(String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Returns the event type matching a particular job type
getEventType(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: Returns the event type matching a particular job type
getEventTypeForHeader(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Returns the event type matching a header.
getExec_jm() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getExec_jm() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getExecDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the execution directory suffix or absolute specified that is appended/replaced to the exec-mount-point specified in the pool catalog for the various pools.
getExecMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: A helper method that returns the execution mount point.
getExecPoolWorkDir(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getExecPoolWorkDir(Job) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: This determines the working directory on remote execution pool for a particular job.
getExecPoolWorkDir(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getExecPoolWorkDir(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getExecutable() - Method in class edu.isi.pegasus.planner.dax.File: Check if the file is an executable
getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Arguments: Accessor
getExecutable() - Method in class edu.isi.pegasus.planner.invocation.CommandLine: Accessor
getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getExecutableBasename() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Return the executable basename for transfer executable used.
getExecutableWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the workflow id
getExecutionDirectory(Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Returns the directory in which a job should be executed.
getExecutionSites() - Method in class edu.isi.pegasus.planner.classes.ADag: It returns the a unique list of the execution sites that the Planner has mapped the dax to so far in it's stage of planning .
getExecutionSites() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the names of the execution sites where the concrete workflow can be run.
getExecutionSites() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns the list of execution pools where the user wants the data products to be computed.
getExitCode() - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular: Accessor
getExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: Returns the path to exitcode that is to be used on the kickstart output.
getExpectedRuntime(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Return expected runtime.
getExpectedRuntimeFromAC(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Return expected runtime from the AC only if the process catalog is initialized.
getExternalStorageDirectory(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Return the storage mount point for a particular pool.
getExternalWorkDirectory(FileServer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Return the work directory as seen externally (including external mount point)
getExternalWorkDirectoryURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns a URL to the work directory as seen externally ( including external mount point ).
getFile() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract: Returns the basename of the file to which the job is written to.
getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork: Returns the basename of the file to which the job is written to.
getFileLocs(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Returns all the locations as returned from the Replica Lookup Mechanism.
getFilename() - Method in interface edu.isi.pegasus.planner.invocation.HasFilename: Accessor: Obtains the name of the file
getFilename() - Method in class edu.isi.pegasus.planner.invocation.Regular: Accessor
getFilename() - Method in class edu.isi.pegasus.planner.invocation.Temporary: Accessor
getFilename(String, String) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: Returns the filename of the ploticus file to be generated.
getFilename(String, String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: Returns the filename of the ploticus file to be generated.
getFileServerIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Not implmented as yet.
getFileServers() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Not implemented as yet.
getFileServersIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Returns at iterator to the file servers.
getFilesFromRC(DAGJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Special Handling for a DAGJob for retrieving files from the Replica Catalog.
getFilesFromRC(DAXJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Special Handling for a DAXJob for retrieving files from the Replica Catalog.
getFilesFromRC(Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: It looks up the RCEngine Hashtable to lookup the locations for the files and add nodes to transfer them.
getFilesInReplica() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: This returns the files for which mappings exist in the Replica Catalog.
getFileTransfers() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Returns the collection of transfers associated with this transfer container.
getFileTX(String, Job, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: This gets the Vector of FileTransfer objects for the files which have to be transferred to an one destination pool.
getFlags() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the bit fields that contain the transient flags (dR and optional).
getFloatValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: A convenience method to get the intValue for the object passed.
getFlowTimestamp() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the flow timestamp for the workflow.
getForce() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the force option set for the planner.
getForceOption() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns true if the user had asked for the force option.
getForceReplan() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the force replan option
getForwardOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the forward options set
getFreeNodesForSite(String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Returns the freenodes for a site.
getFreeSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: Sets the free directory size
getFrom() - Method in class edu.isi.pegasus.planner.provisioner.Edge: return the 'from' task
getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getGatekeeper() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getGID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getGk_port() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getGk_port() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGlibc() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the glibc version of the site.
getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the glibc version of the site.
getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the glibc version of the site.
getGlibc() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Retuns the glibc version of the system.
getGlibc() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the Glibc version if any set for this file.
getGlobus_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getGlobus_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGlobusVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: Returns the version corresponding to a particular version type.
getGlobusVersion() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: Returns the Globus version as a dot separated String.
getGrid() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getGrid_services() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getGrid_services() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGridDN() - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Returns the distinguished name from the proxy
getGridFtp(List<MYOSGSiteServiceInfo>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade: Returns the GridFtp
getGridFTPBandwidthInfo() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: Returns a list of GridFTPBandwidth objects that contain the bandwidths by which a site is connected to other sites.
getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: It returns all the gridftp servers corresponding to a specified pool.
getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns all the gridftp servers corresponding to a specified pool.
getGridFTPTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the timeout value in seconds after which to timeout in case of opening sockets to grid ftp server.
getGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns a grid gateway object corresponding to a job type.
getGridGatewayIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Return an iterator to value set of the Map.
getGridGatewayJobType() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the corresponding grid gateway job type
getGridGateways() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Not implemented as yet
getGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the GRIDSTART that is to be used to launch the jobs on the grid.
getGridStartInvokeLength() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the trigger value for invoking an application through kickstart using kickstart.
getGridTypeID(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
getGroup() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getGroup() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getGsiftp(VORSSiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
getGsiftp(MYOSGSiteInfoFacade) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
getGsiftp_port() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getGsiftp_port() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGsiftp_server() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getGVDSVersion() - Method in class edu.isi.pegasus.planner.client.Executable: Returns the version of the Griphyn Virtual Data System.
getHandle() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getHandletoPDAXWriter(String, String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: It returns the handle to the writer for writing out the pdax file that contains the relations amongst the partitions and the jobs making up the partitions.
getHandleToSiteStore() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get the handle to the site store
getHandleToTransformationCatalog() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get the handle to the transformation catalog.
getHandleToTransformationMapper() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get the handle to the transformation mapper.
getHandleToTransientReplicaCatalog() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get the handle to the transient replica catalog
getHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the headnode filesystem.
getHelp() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns whether to display or not.
getHorizontalClusterPreference() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the users horizontal clustering preference.
getHorizontalPartitionerBundleValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the bundle value for a particular transformation.
getHorizontalPartitionerCollapseValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the collapse value for a particular transformation.
getHostAddress() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getHostName(String) - Static method in class edu.isi.pegasus.planner.common.Utility: This returns the host name of the server, given a url prefix.
getHostname() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getHttpLog4jURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the http url for log4j properties for windward project.
getID() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getID() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the ID associated with the job.
getId() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getID() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns the logical id of the graph node.
getID() - Method in class edu.isi.pegasus.planner.partitioner.Partition: It returns the unique id that is associated with the partition.
getID() - Method in class edu.isi.pegasus.planner.provisioner.Edge
getID() - Method in class edu.isi.pegasus.planner.provisioner.Node
getIdleNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the total number of nodes that this grid gateway talks to.
getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Given a string readMode returns the name of the class that implements that read mode.
getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode: This method just checks and gives the correct classname if a user provides the classname in a different case.
getIn() - Method in class edu.isi.pegasus.planner.provisioner.Node: return the list of incoming edges.
getIndex(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the index for the namespace.
getIndex() - Method in class edu.isi.pegasus.planner.partitioner.Partition: It returns the index to number of the partition.
getIndex() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the index for the associated unit.
getIndex(char) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the index for a unit.
getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth: This method gets the info about gridftpbw based on the gridftpbwkey
getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: Returns the attribute value of a particular attribute of the server.
getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: Returns the attribute value of a particular attribute of the jobmanager.
getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: Returns an Object containing the attribute value corresponding to the key specified.
getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir: Returns the attribute value of a particular attribute of the work directory.
getInheritedRCFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the inherited rc files.
getINode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getInputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getInputFiles() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the set of input files associated with the job.
getInputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo: Accessor
getInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable: Check if the executable is of type installed.
getInstance(String, String) - Static method in class edu.isi.pegasus.common.logging.LogManager: To get a reference to the the object.
getInstance() - Static method in class edu.isi.pegasus.common.util.CondorVersion: Factory method to instantiate the class.
getInstance(LogManager) - Static method in class edu.isi.pegasus.common.util.CondorVersion: Factory method to instantiate the class.
getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Deprecated.
getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Deprecated.
getInstance() - Static method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns an instance to this properties object.
getInstance(String) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns an instance to this properties object.
getInstance(PlannerOptions) - Static method in class edu.isi.pegasus.planner.common.UserOptions: The method used to invoke the singleton instance the first time, from the CPlanner class.
getInstance() - Static method in class edu.isi.pegasus.planner.common.UserOptions: The method used to invoke the singleton instance from the other classes.
getInteger(int) - Static method in class edu.isi.pegasus.planner.common.PegRandom: This calls the next double function and returns an integer between the 0 and upper index.
getInteger(int, int) - Static method in class edu.isi.pegasus.planner.common.PegRandom: This calls the next double function and returns an integer between the lower index and upper index.
getInterface() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor.
getInternalMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Returns the internal mount point for the directory.
getInternalMountPointOfWorkDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the work directory for the compute jobs on a site.
getInternalWorkDirectory(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getInternalWorkDirectory(Job) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This determines the working directory on remote execution pool for a particular job.
getInternalWorkDirectory(Job, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This determines the working directory on remote execution pool or a staging site for a particular job.
getInternalWorkDirectory(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getInternalWorkDirectory(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
getInterpoolFileTX(Job, Vector) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: This gets the Vector of FileTransfer objects for all the files which have to be transferred to the destination pool in case of Interpool transfers.
getIntValue(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenience method to get the intValue for the object passed.
getIntValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: A convenience method to get the intValue for the object passed.
getInvoke() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getInvoke() - Method in class edu.isi.pegasus.planner.dax.Executable: Return the list of Notification objects
getInvoke() - Method in class edu.isi.pegasus.planner.dax.Transformation: Return the list of Notification objects
getInvoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the involuntary context switches.
getIPFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor: Returns a comma separated list of files that are designated for transfer via condor file transfer mechanism for the job.
getJDBCURL(String, Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Constructs the jdbc url on the basis fo the driver and db properties.
getJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the job object corresponding to the id of the job.
getJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG: Returns a Job object with id jobid if present otherwise null.
getJob(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Obtains a job at a certain position in the job list.
getJob(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the job that has been constructed for a particular partition.
getJobAggregator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob: Returns the JobAggregator that created this aggregated job.
getJobAggregator() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns what job aggregator is to be used to aggregate multiple compute jobs into a single condor job.
getJobCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Obtains the size of the job list.
getJobList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Gets an array of all values that constitute the current content.
getJobManager() - Method in class edu.isi.pegasus.planner.classes.Job: Returnss the remote jobmanager on which the job has to run.
getJobManager(String, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: It returns a jobmanager for the given pool.
getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: It returns all the jobmanagers corresponding to a specified site.
getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: It returns all the jobmanagers corresponding to a specified pool and universe.
getJobmanagers() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: It returns all the jobmanagers corresponding to a specified pool.
getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: It returns all the jobmanagers corresponding to a specified pool and universe.
getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns all the jobmanagers corresponding to a specified site.
getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns all the jobmanagers corresponding to a specified pool and universe.
getJobName() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: It returns the name of the main/compute job making up the VDS supernode with which this transfer is related.
getJobName(String) - Method in class edu.isi.pegasus.planner.visualize.KickstartParser: Returns the name of the job from the kickstart output filename.
getJobName() - Method in interface edu.isi.pegasus.planner.visualize.Measurement: Returns the job for which the measurement was taken.
getJobName() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: Returns the job for which the measurement was taken.
getJobnamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the job prefix to be used while constructing the job names.
getJobPriority(Job, int) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Computes the priority for a job based on job type and depth in the workflow
getJobsInRC(Graph, Set) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: Returns all the jobs whose output files exist in the Replica Catalog.
getJobsInRC(Vector, Set) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: This determines the jobs which are in the RC corresponding to the files found in the Replica Catalog.
getJobStatus() - Method in class edu.isi.pegasus.planner.invocation.Status: Accessor
getJobType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the type of jobs that run via this grid gateway.
getJobType() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the type of the job.
getJobTypeDescription() - Method in class edu.isi.pegasus.planner.classes.Job: Gets the textual description of the type associated with the job.
getJobTypeDescription(int) - Method in class edu.isi.pegasus.planner.classes.Job: Gets the textual description of the type that can be associated with a job.
getKeepTMPValue(String) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Returns the int value corresponding to the string value passed.
getKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Returns the key with the prefix stripped off.
getKey() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection: Returns the connection key.
getKey() - Method in class edu.isi.pegasus.planner.classes.NameValue: Returns the key associated with this tuple.
getKey(String, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper: Adds a prefix to the key and returns it.
getKey() - Method in class edu.isi.pegasus.planner.dax.MetaData: Get the key of this metadata object
getKey() - Method in class edu.isi.pegasus.planner.dax.Profile: Get the key of this Profile
getKey() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry: Accessor
getKickstartPath() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: A helper method that returns the path to gridlaunch on the site.
getKickstartPath(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the default path to kickstart as constructed from the environment variable associated with a site in the site catalog
getLabel() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the label of the workflow, that was specified in the DAX.
getLabel() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the label of the workflow, that was specified in the DAX.
getLabel() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Returns the DAXlabel.
getLabel() - Method in class edu.isi.pegasus.planner.dax.Parent
getLabel(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Label: Returns the label for the node.
getLast() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain: Returns the last element in the chain.
getLast_Test_Date() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getLeafNodes() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns all the leaf nodes of the dag.
getLeafNodes() - Method in class edu.isi.pegasus.planner.classes.DagInfo: This returns all the leaf nodes of the dag.
getLeaves() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Returns the leaf nodes of the Graph.
getLeaves() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns the leaf nodes of the Graph.
getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Default: Returns the debug level.
getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Returns the debug level.
getLevel() - Method in class edu.isi.pegasus.common.logging.LogManager: Returns the debug level.
getLevel() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the level associated with the job.
getLfn(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Get logical transformations on a given resource and/or of a particular type.
getLFN() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: It returns the lfn of the file that is associated with this transfer.
getLFN() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Returns the associated LFN.
getLFN() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getLFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns the number of LFN's for which the mappings are stored in the store.
getLfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Get the LFn profiles associated with a logical transformation
getLFNs() - Method in class edu.isi.pegasus.planner.classes.DagInfo: It returns the list of lfns referred to by the DAG.
getLFNs(boolean) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the list of lfns referred to by the DAG.
getLFNs() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns the set of LFN's for which the mappings are stored in the store.
getLFNs(Set) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns a Set of lfns for which the mappings are stored in the store, amongst the Set passed as input.
getLineNumber() - Method in exception edu.isi.pegasus.planner.parser.ScannerException
getLineNumber() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner: Obtains the current line number in the input stream from the outside.
getLineNumber() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner: Obtains the current line number in the input stream from the outside.
getLink() - Method in class edu.isi.pegasus.planner.dax.File: Get the linkage of the file.
getLinkage() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the linkage for the file during parsing.
getLinkCount() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getListValueFromMetadata(Map, String) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Returns the first value from the List values for a key
getLocalDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType: Returns the local directory.
getLocalPoolEnvVar() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Return returns the environment string specified for the local pool.
getLocalSiteInfo(String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
getLog4JLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the local log file where you want the messages to be logged.
getLogFormatter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the log formatter to use.
getLogger() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get Logger/
getLoggingFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the file to which all the logging needs to be directed to.
getLoggingLevel() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the logging level.
getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.SCClient: Returns the logging level.
getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.TCConverter: Returns the logging level.
getLogicalId(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns the id associated with the logical transformation.
getLogicalID() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the logical id of the job.
getLogicalName() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the Name of the logical transformation.
getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Returns the logical names for the jobs.
getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Vertical: Returns null as for label based clustering we dont want the transformation name to be considered for constructing the name of the clustered jobs
getLogicalNamespace() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the Namespace associated with the logical transformation.
getLogicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Gets the Fully Qualified Transformation mName in the format NS::Name:Ver.
getLogicalVersion() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the mVersion of the logical transformation.
getLogManager() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the log manager to use.
getMachine() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getMachine() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor.
getMachineInfoIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific: Returns an iterator for the machine info objects
getMachineSpecific() - Method in class edu.isi.pegasus.planner.invocation.Machine: Obtains the machine-specific grouping element.
getMajorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the major page faults.
getMakespan() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Returns the makespan of the scheduled workflow.
getMatchingJMList(List, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: Returns a list containing only those jobmanager entries that match a particular universe.
getMatchingProperties(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the properties matching a particular prefix as a list of sorted name value pairs, where name is the full name of the matching property (including the prefix) and value is it's value in the properties file.
getMaximumRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getMeasurement(int) - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements: Returns the measurement corresponding to the event type.
getMeasurements(String) - Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements: Returns the list of Measurement objects corresponding to a particular site.
getMegaDAGMode() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the megadag generation option .
getMetaData() - Method in class edu.isi.pegasus.planner.dax.CatalogType: Returns the List of MetaData objects associated with this Catalog entry object
getMethodName(int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Its returns the name of the method that needs to be invoked to get the object of the implementing pool class.
getMetricsLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the path to the file that is used to be logging metrics Referred to by the "pegasus.log.metrics.file" property.
getMinorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the minfor page faults.
getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All: Returns the mode description.
getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Returns the TCMapper Mode.
getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
getMode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getModificationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Returns the mount point
getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: Returns the mount point for the file system type.
getMTime() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the last modified time for the file containing the workflow description.
getMTime() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the last modified time for the file containing the workflow description.
getMultiplyingFactor(int, int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns multiplying factor for conversion.
getName(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Returns the name from the key.
getName() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns name of compound transformation.
getName() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the name of the job.
getName() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getName() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the name of the executable
getName() - Method in class edu.isi.pegasus.planner.dax.File: Get the name of the file
getName() - Method in class edu.isi.pegasus.planner.dax.Parent
getName() - Method in class edu.isi.pegasus.planner.dax.Transformation: Get the name of the transformation
getName() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns the logical name of the graph node.
getName() - Method in class edu.isi.pegasus.planner.partitioner.Partition: It returns the name of the partition.
getName() - Method in class edu.isi.pegasus.planner.ranking.Ranking: Returns the name of the dax.
getName() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site: Returns the name of the site.
getName() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue: Returns the key of this pair, i.e the left hand side of the mapping.
getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: Returns the name of the dax.
getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: Returns the name of the dax.
getNamespace() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns the namespace
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the namespace of the executable
getNamespace() - Method in class edu.isi.pegasus.planner.dax.File: Get the namespace of the file
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Job
getNameSpace() - Method in class edu.isi.pegasus.planner.dax.Profile: Get the namespace of this profile
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Transformation: Get the namespace of the transformation
getNaturalNumberValue(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Returns a natural number value ( > 0 ) if the parameter passed is an integer and greater than zero, else -1
getNetloggerExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: Returns the path to exitcode that is to be used on the kickstart output.
getNextException() - Method in exception edu.isi.pegasus.planner.catalog.CatalogException: Retrieves the exception chained to this CatalogException object.
getNode(String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Returns the node matching the id passed.
getNode(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns the node matching the id passed.
getNodeIDs() - Method in class edu.isi.pegasus.planner.partitioner.Partition: It returns the set of the job ids making up the partition.
getNodeLabel() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getNodeName() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getNodeParents(String) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: Gets all the parents of a particular node.
getNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition: Returns a list of nodes making up the partition.
getNonStandardJavaOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the Set of non standard java options.
getNonThirdPartySite() - Method in class edu.isi.pegasus.planner.classes.TransferJob: Returns the site at which the job would have run if the transfer job was being run in non third party mode.
getNoOfJobs() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the number of jobs in the dag on the basis of number of elements in the dagJobs Vector.
getNoOfJobs() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the number of jobs in the dag on the basis of number of elements in the dagJobs Vector.
getNOOPJobName(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner: Returns the name of the noop job.
getNOOPJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Generates the name of the noop job , that is unique for the given workflow.
getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns a collection of all the notifications that need to be done for a particular condition
getNotifications() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns all the notifications associated with the job.
getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.ADag: Returns a collection of all the notifications that need to be done for a particular condition
getNotifications() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns all the notifications associated with the job.
getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns a collection of all the notifications that need to be done for a particular condition
getNotifications() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns all the notifications associated with the job.
getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Job: Returns a collection of all the notifications that need to be done for a particular condition
getNotifications() - Method in class edu.isi.pegasus.planner.classes.Job: Returns all the notifications associated with the job.
getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Notifications: Returns a collection of all the notifications that need to be done for a particular condition
getNumberOfRescueTries() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the number of times to try for rescue dag submission.
getNumberOfSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: Returns the number of sites parsed
getNumOfTransferProcesses() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It returns the number of processes of g-u-c that the transfer script needs to spawn to do the transfers.
getNumOfTransferStreams() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It returns the number of streams that each transfer process uses to do the ftp transfer.
getOptional() - Method in class edu.isi.pegasus.planner.dax.File: Check the optional flag of the file
getOptions() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns the options passed to the planner.
getOriginalArgString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the argument string of how planner was invoked.
getOS() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the OS of the site.
getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the OS of the nodes that this grid gateway talks to.
getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the OS of the site.
getOs() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Returns the os type of the system.
getOS() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the OS the Executable is compiled for
getOsg_grid() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getOsg_grid() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the OS release of the site.
getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the OS release of the site.
getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the OS release of the site.
getOsRelease() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the OS release set for this executable.
getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Returns the OS version of the site.
getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the OS version of the site.
getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the OS version of the site.
getOsversion() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Returns the os version of the system.
getOsVersion() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the OS version set for this executable.
getOut() - Method in class edu.isi.pegasus.planner.provisioner.Node: return the list of outgoing edges.
getOutputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getOutputFiles() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the set of output files associated with the job.
getOutputFiles(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: It gets the output files for all the nodes which are specified in the Vector nodes passed.
getOutputFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor: Returns a comma separated list of files that are designated for transfer via condor file transfer mechanism for the job.
getOutputPool() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns output pool where the user wants the data products to be transferred to.
getOutputSite() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the output site where to stage the output .
getOutputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo: Accessor
getPageSize() - Method in class edu.isi.pegasus.planner.invocation.Machine: Obtains the page size information.
getParam(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator: Returns the parameter name-value pair
getParent() - Method in class edu.isi.pegasus.planner.classes.PCRelation: Returns the parent in the edge.
getParents(String) - Method in class edu.isi.pegasus.planner.classes.ADag: Gets all the parents of a particular node
getParents(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo: Gets all the parents of a particular node.
getParents() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns a list of GraphNode objects that are parents of the node.
getParentsTransientRC(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Returns a set containing the paths to the parent dax jobs transient replica catalogs.
getPartitionCount(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Returns the number of partitions referred to in the PDAX file.
getPartitionerDAXCallback() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the DAXCallback that is to be used while parsing the DAX.
getPartitionerLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the key that is to be used as a label key, for labelled partitioning.
getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.BFS: Constructs the id for the partition.
getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Constructs the id for the partition.
getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Label: Constructs the id for the partition.
getPartitioningType() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the partitioning type in case of partition and plan.
getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter: It returns the name of the partitioned dax, that the object is currently writing or initialized to write.
getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Returns the name of the partition, that needs to be set while creating the Partition object corresponding to each partition.
getPartitionParsingMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the mode for parsing the dax while writing out the partitioned daxes.
getPath() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: Returns the path to the credential on the submit host.
getPath(String) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: Returns the path to the credential for a particular site handle
getPath() - Method in class edu.isi.pegasus.common.credential.impl.Abstract: Returns the path to the credential on the submit host.
getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Irods: Returns the path to irodsEnv.
getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Proxy: Returns the path to user proxy.
getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG: Returns the path to s3cfg.
getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Ssh: Returns the path to ssh private key.
getPathOnStageoutSite(String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Returns the full path on remote output site, where the lfn will reside.
getPathToChmodExecutable(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Returns the path to the chmod executable for a particular execution site by looking up the transformation executable.
getPathToShellScript(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Returns path to the shell script that is generated
getPDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the path to the PDAX file being used by the planner.
getPDAX() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Returns the name of the pdax file written out.
getPDAXFilename(String, int) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter: It constructs the name of the partitioned dax file that has to be written corresponding to a partition of the dax.
getPDAXFilename(String, int, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter: It constructs the name of the partitioned dax file that has to be written corresponding to a partition of the dax.
getPDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the schema for the PDAX.
getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Returns the bag of intialization objects.
getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.MainEngine: Returns the bag of intialization objects.
getPegasusHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Deprecated.
getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Deprecated.
getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns the value of PEGASUS_HOME for a site.
getPegasusProperties() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get PegasusProperties
getPegasusRunInvocation() - Method in class edu.isi.pegasus.planner.client.CPlanner: Returns the pegasus-run invocation on the workflow planned.
getPFN() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Accessor: Obtains the PFN portion from this entry.
getPfn(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Get physical transformation for a particular logical transformation and/or on a resource and/or of a particular type
getPFN(int) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Return a PFN as a ReplicaCatalogEntry
getPFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Returns the number of pfn's associated with the lfn.
getPFNList() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Returns the list of pfn's as ReplicaCatalogEntry objects.
getPfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Get the profiles associated with a physical transformation.
getPhysicalFiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType: Returns a List of PFN objects associated with this Catalog entry
getPhysicalId(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns the id of the physical transformation
getPhysicalIds(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns a list of pfnid for a given pfn on any resource, and of any type.
getPhysicalMemory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor.
getPhysicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the physical location of the transformation.
getPID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getPID() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getPlannerOptions() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get PlannerOptions
getPool() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest: Returns the pool id of the associated resource in this request.
getPoolConfig() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: This class returns the reference to the PooConfig object containing information about all the pools.
getPoolConfig() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: This class returns the reference to the PooConfig object containing information about all the pools.
getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: Gets the pool information from the pool.config file on the basis of the name of the pool, and the universe.
getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Gets the pool information from the pool.config file on the basis of the name of the pool, and the universe.
getPoolFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the path to the pool file.
getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns a textual description of the pool mode being used.
getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text: Returns a textual description about the pool mode that is implemented by this class.
getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML: Returns a textual description about the pool mode that is implemented by this class.
getPoolMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the mode to be used for accessing the pool information.
getPoolName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Return the pool for which the transfers are grouped
getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: It returns the profile information associated with a particular pool.
getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns the profile information associated with a particular pool.
getPoolProfile(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns profile information associated with a particular namespace and pool.
getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: It returns all the pools available in the site catalog
getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It returns all the pools available in the site catalog
getPoolSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the schema for the DAX.
getPoolSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the schema for the site catalog file.
getPosition() - Method in exception edu.isi.pegasus.common.util.ProfileParserException: Obtains the position at which point the exception was thrown.
getPosition() - Method in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException: Obtains the position at which point the exception was thrown.
getPosition() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry: Accessor
getPostScriptLogFile(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Returns the path to the postscript log file for a job.
getPOSTScriptPath(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: Returns the path to the postscript of a particular type
getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: Returns the properties that need to be passed to the the postscript invocation in the java format.
getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode: Returns an empty string, as python version of exitcode cannot parse properties file.
getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Returns the properties that need to be passed to the the postscript invocation in the java format.
getPrefix(int) - Method in class edu.isi.pegasus.common.logging.logger.Default: Returns the prefix that needs to be logged corresponding to a particular message type, when a message is being logged.
getPreScriptArguments() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the arguments to the prescript for the job if set.
getPreScriptPath() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the path to the prescript for the job if set.
getPrintStream(String) - Method in class edu.isi.pegasus.common.logging.logger.Default: Sets an internal writer to point to a particular stream.
getPrintStream(int) - Method in class edu.isi.pegasus.common.logging.logger.Default: Returns a PrintWriter stream on which to log the message.
getPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Returns the priority for the transfer job as specified in the properties file.
getProfile() - Method in class edu.isi.pegasus.planner.classes.Profile: Returns the Profile (namespace, value and key);
getProfile() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Parses a single line and returns a profile.
getProfileKey() - Method in class edu.isi.pegasus.planner.classes.Profile: Returns the Key of the Profile
getProfileKeyIterator(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns a iterator over the profile keys corresponding to a particular namespace.
getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Hints: Provides an iterator to traverse the profiles by their keys.
getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Namespace: Provides an iterator to traverse the profiles by their keys.
getProfileNamespace() - Method in class edu.isi.pegasus.planner.classes.Profile: Returns the NameSpace of the Profile
getProfiles() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the list of profiles for all namespaces.
getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the list of profiles corresponding to a single namespace
getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the list of profiles corresponding to a single namespace
getProfiles(Namespace) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns the list of profiles corresponding to a single namespace
getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the profiles associated with the site.
getProfiles() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the list of profiles associated with the transformation.
getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the profiles for a particular Namespace.
getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns all the profiles relevant to a particular namespace
getProfiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType: Return the List of Profile objects associated with this Catalog entry
getProfiles() - Method in class edu.isi.pegasus.planner.dax.PFN
getProfilesForTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Returns a list of profiles that have to be applied to the entries for all the sites corresponding to a transformation.
getProfileValue() - Method in class edu.isi.pegasus.planner.classes.Profile: Returns the Value for the profile
getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.Event: Returns the program name for the software whose log statement are logged.
getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Returns the program name for the software whose log statement are logged.
getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Returns the program name for the software whose log statement are logged.
getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Returns the program name for the software whose log statement are logged.
getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Returns the program name for the software whose log statement are logged.
getProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the path to the properties file for the run.
getPropertiesInSubmitDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the path to the property file that has been writting out in the submit directory.
getProperty(String) - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor: access to the internal properties as read from file.
getProperty(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor: access to the internal properties as read from file An existing system property of the same key will have precedence over any project property.
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource: Returns the property value
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo: Returns the property value
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo: Returns the property value
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo: Returns the property value
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo: Returns the property value
getProperty(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo: Returns the property value
getProperty(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It allows you to get any property from the property file without going through the corresponding accesor function in this class.
getProperty(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: This function is used to check whether a deprecated property is used or not.
getProperty(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: This function is used to check whether a deprecated property is used or not.
getProperty(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns the name of the property, for a particular site X.
getPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites: Returns the full name of the property key with the appropriate prefix
getPropertyKey(int) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory: Returns the name of the property that needs to be loaded for a particular type.
getProtocol() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Returns protocol implemented by the file server.
getQuotedValue(String) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Parses a quoted value and strips out the enclosing quotes.
getRandomDir() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the random directory option.
getRandomDirectory(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner: Sets the basename of the random directory that is created on the remote sites per workflow.
getRandomDirName() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the name of the random directory, only if the generate Random Dir flag is set.
getRandomDirName() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns the name of the random directory, only if the generate Random Dir flag is set.
getRank() - Method in class edu.isi.pegasus.planner.ranking.Ranking: Returns the rank.
getRank() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: Returns the rank associated with it.
getReceived() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getRefinementProvenanceStore() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the provenance store to use to log the refiner actions.
getRegex() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: Returns the underlying regex pattern associated with the Rank object.
getRegexSet(Properties) - Method in class edu.isi.pegasus.planner.selector.replica.Regex: Returns a sorted set containing the various Patterns pre-compiled.
getRegister() - Method in class edu.isi.pegasus.planner.dax.File: Get the register flag of this file.
getRegisterFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the value of the register flag
getRegistrationFiles() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Returns the collection of registration files associated with this transfer container.
getRegJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Generates the name of the transfer job, that is unique for the given workflow.
getRegName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Returns the name of the registration job.
getRelations() - Method in class edu.isi.pegasus.planner.partitioner.Partition: A function to return the child-parent relations for the jobs making up the partition.
getRelativeDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the relative directory.
getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the path to the relative submit directory.
getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the relative submit directory.
getRelativeSubmitDirectoryOption() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the relative submit directory option.
getRelease() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getRemoteExecutable() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the path of the underlying executable on the remote grid site.
getRemoveDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: It returns the name of the remove directory job, that is to be assigned.
getReplicaCatalogIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Return an iterator to the replica catalog associated with the site.
getReplicaLocation(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns a ReplicaLocation corresponding to the LFN.
getReplicaMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the replica mode.
getReplicaSelector() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the name of the selector to be used for selection amongst the various replicas of a single lfn.
getReplicaStore() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the Replica Store
getReplicaStoreFromFiles(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Ends up loading a Replica Store from replica catalog files
getRequestID() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the request id.
getResource(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Get and print the Resource entries for a given logical transformation and transformation type
getResource() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getResourceContact() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest: Returns the url of the resource to contact.
getResourceHandle() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Obtains the resource handle from the attributes map.
getResourceId() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the resource where the transformation is located.
getResourceType() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest: Returns the type of the request.
getRLIURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the url to the RLI of the RLS.
getRLSTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It returns the timeout value in seconds after which to timeout in case of no activity from the RLS.
getRootDirectoryNameForPegasus(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Does regex magic to figure out the version of pegasus from the url, and use it to construct the name of pegasus directory, when worker package is untarred.
getRootNodes() - Method in class edu.isi.pegasus.planner.classes.ADag: It determines the root Nodes for the ADag looking at the relation pairs of the adag.
getRootNodes() - Method in class edu.isi.pegasus.planner.classes.DagInfo: It determines the root Nodes for the ADag looking at the relation pairs of the adag.
getRootNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition: Returns the root nodes in the partition.
getRoots() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Returns the root nodes of the Graph.
getRoots() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns the root nodes of the Graph.
getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the UUID for the Root workflow
getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the root workflow UUID if defined in the properties, else null Referred to by the "pegasus.workflow.root.uuid" property.
getRuntime() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the expected runtime for the job that is set using the setRuntime method.
getRuntime() - Method in class edu.isi.pegasus.planner.ranking.Ranking: Returns the runtime.
getScheduler() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the the underlying scheduler that gateway talks to.
getSchedulerType(String) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
getSchedulerType(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
getSchemaDir() - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor to schema directory
getSchemaDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Accessor to the schema directory of the Pegasus install
getSchemaLocation() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
getSchemaLocation() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Helps the load database to locate the DAX XML schema, if available.
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Returns the local path to the XML schema against which to validate.
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.Parser: Helps the load database to locate the XML schema, if available.
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.PDAXParser: Helps the load database to locate the PDAX XML schema, if available.
getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser: Returns the local path to the XML schema against which to validate.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.Parser: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.PDAXParser: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser: Returns the XML schema namespace that a document being parsed conforms to.
getSchemaOfDocument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: A convenience method that tries to get the name of the schema the document refers to.
getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: Returns the scratch area on the head node.
getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: Returns the scratch area on the head node.
getScriptFooter() - Method in class edu.isi.pegasus.planner.code.generator.Shell: Returns the footer for the generated shell script.
getScriptHeader(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Returns the header for the generated shell script.
getSeMountPoint(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Return the storage mount point for a particular pool.
getSent() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getSetXBitJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Generates the name of the setXBitJob , that is unique for the given workflow.
getSetXBitJobName(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Generates the name of the setXBitJob , that is unique for the given workflow.
getSharedDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Accessor to the bin directory of the Pegasus install
getSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType: Returns the shared directory.
getSharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getSharedStateDir() - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor to $PEGASUS_HOME/com.
getShortname() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getShortname() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal: Accessor
getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Accessor
getSignals() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the system signals sent.
getSISiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Determines the bundle factor for a particular site on the basis of the stage in bundle value associcated with the underlying transfer transformation in the transformation catalog.
getSite() - Method in class edu.isi.pegasus.planner.dax.PFN
getSite() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Returns the site transformation for a site, and moves the scanner to hold the next TransformationCatalogReservedWord.
getSiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain: Determines the bundle factor for a particular site on the basis of the key associcated with the underlying transfer transformation in the transformation catalog.
getSiteForCleanup(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Returns site to be used for the cleanup algorithm.
getSiteHandle() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the site handle for the site
getSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the handle of the site where the job is scheduled.
getSiteHandle() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser: Returns the site handle for a site, and moves the scanner to hold the next SiteCatalogReservedWord.
getSiteList(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Returns a list of sites that are valid sites for a given lfn and a list of sites.
getSiteList(String) - Method in class edu.isi.pegasus.planner.classes.TCMap: Returns a List of siteid's that are valid for a particular lfn.
getSiteList(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap: Returns a list of siteid's that are valid for a particular lfn and among a list of input sites
getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All: This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed: This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged: This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site
getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit: This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site
getSiteMap(String) - Method in class edu.isi.pegasus.planner.classes.TCMap: Returns a HashMap of sites as keys and a List of TransformationCatalogEntry object as values.
getSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: Returns the site's list
getSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: Returns information about all the sites.
getSiteSelectorKeep() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a value designating whether we need to keep the temporary files that are passed to the external site selectors.
getSiteSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the class name of the site selector, that needs to be invoked to do the site selection.
getSiteSelectorPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the path to the external site selector that needs to be called out to make the decision of site selection.
getSiteSelectorTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It returns the timeout value in seconds after which to timeout in case of no activity from the external site selector.
getSitesMissingInformation(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getSitesSet(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns a set of third party sites.
getSitesTCEntries(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap: Retrieves all the entries matching a particular lfn for the sites passed.
getSiteStore() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser: Returns the constructed site store object
getSiteTCEntries(String, String) - Method in class edu.isi.pegasus.planner.classes.TCMap: This method returns a list of TransformationCatalogEntry objects for a given transformation and siteid
getSize() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the size for the file.
getSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getSize() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the size in the units associated with it.
getSize(char) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the size in particular unit.
getSizes(String) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage: Returns the list of Space objects corresponding to a particular site.
getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Returns the LFN of sls input file.
getSLSInputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Returns the LFN of sls input file.
getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Returns the LFN of sls input file.
getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Returns the LFN of sls output file.
getSLSOutputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Returns the LFN of sls output file.
getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Returns the LFN of sls output file.
getSLSTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the extra arguments with which the SLS transfer executables needs to be invoked.
getSLSTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the sls transfer implementation that is to be used for constructing the transfer jobs.
getSourceURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a single source url associated with the transfer.
getSourceURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a single source url associated with the transfer.
getSpace(int, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Gets the required space for pretty printing.
getSpaceReading(int) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: Returns the space reading for a particular type of job of event.
getSponsor_vo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getSponsor_vo() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getStackRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getStagedExecutableBaseName() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the basename for the staged executable corresponding to the job.
getStagedExecutableBaseName(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job: Returns the basename for the staged executable corresponding to the job.
getStageInPoolTransfer(Map<String, Bundle.PoolTransfer>, String, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Returns the appropriate stagein pool transfer for a particular site.
getStageOutPoolTransfer(String, boolean, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Returns the appropriate pool transfer for a particular site.
getStagingDelimiter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the delimiter to be used for constructing the staged executable name, during transfer of executables to remote sites.
getStagingSite(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the staging site for an execution site.
getStagingSite(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Returns the staging site for a particular execution site.
getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Returns the staging site to be used for a job.
getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Returns the staging site to be used for a job.
getStagingSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the staging site.
getStamp() - Method in class edu.isi.pegasus.planner.invocation.Machine: Obtains the time stamp information when the remote machine element was recorded.
getStart() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getStart() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getStartDate() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Returns the start date formatted as MM/dd/yyyy.
getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event: Creates the start message for the event.
getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: Creates the start message for the event on top of the internal stack
getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent: Creates the start message for the event.
getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent: Creates the start message for the event.
getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter: Creates the start message for the event on top of the internal stack
getStartTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the start time for the planning operation.
getStatCall(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Obtains a stat at a certain position in the stat list.
getStatCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Obtains the size of the stat list.
getState() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState: Returns the state.
getState() - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState: Returns the state.
getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Singleton manager for prepared statements.
getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.work.Database: Singleton manager for prepared statements.
getStatement(int) - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Singleton manager for prepared statements.
getStatInfo() - Method in class edu.isi.pegasus.planner.invocation.StatCall: Accessor
getStatList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Gets an array of all values that constitute the current content.
getStatus() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getStatus() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getStatus() - Method in class edu.isi.pegasus.planner.invocation.Status: Accessor
getStdErr() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the file to which the stderr of the job is written to.
getStderr() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getStdIn() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the file from which the stdin is picked up.
getStdin() - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Get the STDIN file object
getStdOut() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the file to which the stdout of the job is written to.
getStdout() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: Returns the storage area on the head node.
getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: Returns the storage area on the head node.
getStorageDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the storage directory suffix or absolute specified that is appended/replaced to the storage-mount-point specified in the pool catalog for the various pools.
getStringValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Returns a String value, that a particular key is mapped to in this namespace.
getSubInfo(String) - Method in class edu.isi.pegasus.planner.classes.ADag: This returns a Job object corresponding to the job by looking through all the subInfos.
getSubInfo(String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Returns the Job object for the job specified.
getSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the path to the directory where the submit files are to be generated.
getSubmitFileDir() - Method in class edu.isi.pegasus.planner.common.UserOptions: Returns the directory where the user wants the submit files to be generated.
getSubmitHostname() - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Returns the submit hostname
getSubmitHostPathToPegasusLiteCommon() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Determines the path to common shell functions file that Pegasus Lite wrapped jobs use.
getSubmitHostPathToPegasusLiteLocal() - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor: Determines the path to PegasusLite local job
getSubmitHostPathToShellRunnerFunctions() - Method in class edu.isi.pegasus.planner.code.generator.Shell: Determines the path to common shell functions file that the generated shell script will use.
getSubmitLogsDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the the path to the logs directory on the submit host.
getSubmitMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns which submit mode to be used to submit the jobs on to the grid.
getSwaps() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains number of swap operations.
getSyncJob(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Returns the current synch job for a site.
getSyncJobBetweenLevelsName(String, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Returns the name of the job that acts as a synchronization node in between stage in jobs of different levels.
getSysConfDir() - Method in class edu.isi.pegasus.common.util.CommonProperties: Accessor to $PEGASUS_HOME/etc.
getSysConfDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Accessor to $PEGASUS_HOME/etc.
getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the System Information associated with the Site.
getSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns the SysInfo for the site
getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: Returns the System information for a single site.
getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns the System information for a single site.
getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the System Information associated with the transformation.
getSysInfoId(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Gets the id for the system information entry.
getSysInfos(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: Returns the System information for a bunch of sites.
getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns the System information for a bunch of sites.
getSystemName() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getSystemTime() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the system time from the object.
getTag() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getTag() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific: Accessor
getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper: Returns the task count for a job.
getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Returns the task count for a job.
getTC() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery: Print all the contents of the TC in pretty print
getTCEntry(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Helper method to get an entry from the transformation catalog for an installed executable.
getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Returns the TCEntry object for the rm executable on a grid stagingSite.
getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM: Returns the TCEntry object for the rm executable on a grid site.
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Installed: Returns a list of TransformationCatalogEntry objects of type installed from a List of valid TCEntries
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Random: This method randomly selects one of the records from numerous valid Transformation Catalog Entries returned by the TCMapper.
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Staged: Takes a list of TransformationCatalogEntry objects and returns 1 or many TransformationCatalogEntry objects as a list by selecting only Static stageable binary's
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Submit: This method returns a list of TransformationCatalogEntry objects of type STATIC_BINARY and only available on the Submit machine( "local" site).
getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.TransformationSelector: Takes a list of TransformationCatalogEntry objects and returns 1 or many TransformationCatalogEntry objects as a list depending on the type of selection algorithm.
getTCList(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: This method returns a List of TransformationCatalog Objects valid for a particular transformation and for a particular compute site
getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Get the list of LogicalNames available on a particular resource.
getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Get the list of LogicalNames available on a particular resource.
getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Get the list of LogicalNames available on a particular resource.
getTCLogicalNames(String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Get the list of LogicalNames available on a particular resource.
getTCMapperMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the mode for loading the transformation mapper that sits in front of the transformation catalog.
getTCMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the mode to be used for accessing the Transformation Catalog.
getTCPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the location of the transformation catalog.
getTCXML() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
getTempFilename() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Creates a temporary file and obtains its name.
getTerminate() - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
getTextToPoolConfig(String) - Method in class edu.isi.pegasus.planner.client.SCClient: Generates the old site catalog object reading in from text file.
getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the comma separated list of third party sites, specified in the properties.
getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Returns a set of third party sites.
getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.TPT: Returns a set of third party sites.
getThirdPartySitesRemote(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the comma separated list of third party sites for which the third party transfers are executed on the remote sites.
getTime() - Method in interface edu.isi.pegasus.planner.visualize.Measurement: Returns the time at which the measurement was taken.
getTime() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: Returns the time at which the measurement was taken.
getTimeStamp() - Method in class edu.isi.pegasus.common.logging.logger.Default: Gets the timestamp nicely formatted.
getTmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getTmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getTmp_space() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getTmp_space() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getTo() - Method in class edu.isi.pegasus.planner.provisioner.Edge: return the 'to' task
getTotalNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the total number of nodes that this grid gateway talks to.
getTotalSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: Returns the total directory size.
getTransfer() - Method in class edu.isi.pegasus.planner.dax.File: Get the transfer type of the file
getTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the arguments with which the transfer executable needs to be invoked.
getTransferContainerIterator() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Returns the iterator to the list of transfer containers.
getTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the tristate transfer mode that is associated with the file.
getTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the transfer implementation that is to be used for constructing the transfer jobs.
getTransferImplementation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the transfer implementation.
getTransferInterPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the priority to be set for the interpool transfer job.
getTransferPriority(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the transfer priority.
getTransferRefiner() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the transfer refiner that is to be used for adding in the transfer jobs in the workflow Referred to by the "pegasus.transfer.refiner" property.
getTransferStageInPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the priority to be set for the stage in transfer job.
getTransferStageOutPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the priority to be set for the stage out transfer job.
getTransformation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Returns the transformation name, and moves the scanner to hold the next TransformationCatalogReservedWord.
getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the transformation catalog entry for kickstart on a site
getTransformationCatalogEntry(String, Profiles, boolean) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Constructs a single transformation catalog entry and returns it.
getTransformationCatalogEntry(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
getTransformations(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Returns a list of transformation names matching on a site and transformation type.
getTransformationStore() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the Transformation Store
getTransientRegFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the transient registration flag (the value of dontRegister).
getTransientTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns whether the transfer is transient or not.
getTruncated() - Method in class edu.isi.pegasus.planner.invocation.Data: Accessor
getTXJobName(int, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Generates the name of the transfer job, that is unique for the given workflow.
getTXJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: Generates the name of the transfer job, that is unique for the given workflow.
getTXName() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the name of the underlying transformation.
getTXName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: Returns the name of the transfer job.
getTXNamespace() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the namespace of the underlying transformation.
getTXPoolEntry(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Gets the pool object to be used for the transfer universe.
getTXSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the mode for loading the transformation selector that selects amongst the various candidate transformation catalog entry objects.
getTXVersion() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the version of the underlying transformation.
getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Returns the type of jobs that run via this grid gateway.
getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Returns the type of replica catalog.
getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
getType() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the type of the transformation.
getType() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Returns the tristate transfer mode that is associated with the file.
getType() - Method in class edu.isi.pegasus.planner.dax.MetaData: Get the type of the metdata object
getUID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getUID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getUMask() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getUname() - Method in class edu.isi.pegasus.planner.invocation.Machine: Obtains the utsname generic system information record.
getUnits() - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Returns the units associated with the size.
getUniverse() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the universe associated with the job.
getUnsharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor.
getUntarJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: It returns the name of the untar job, that is to be assigned.
getUpLen() - Method in class edu.isi.pegasus.planner.provisioner.Node: return the UpLength of this task.
getURL() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Returns the url for the replica catalog.
getURL(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator: Returns the url
getURL() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC: Returns the LRC url associated with a pool.
getURL(Map, boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a single url from the map passed.
getURL() - Method in class edu.isi.pegasus.planner.dax.PFN
getURLPrefix() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: Returns the url prefix .
getURLPrefix(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: A helper method that returns the url prefix for one of the gridftp server associated with the pool.
getURLPrefix(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns the url prefix of a gridftp server on the pool.
getUsage() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getUsage() - Method in class edu.isi.pegasus.planner.invocation.Job: Accessor
getUseOfSymbolicLinks() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: It returns whether the use of symbolic links in case where the source and destination files happen to be on the same file system.
getUser() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getUser() - Method in class edu.isi.pegasus.planner.invocation.StatInfo: Accessor
getUserTime() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the user time from the object.
getUses() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
getUses() - Method in class edu.isi.pegasus.planner.dax.Transformation: Get the List of files and/or executables being used by the transformation
getUtil_jm() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getUtil_jm() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getUtilJobManager(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade: Returns the utility job manager path
getValue() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection: Returns the key value.
getValue(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Deprecated.
getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch: Returns the value of the architecture as string.
getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os: Returns the value of the operating system as string.
getValue() - Method in class edu.isi.pegasus.planner.classes.NameValue: Returns the value associated with this tuple.
getValue() - Method in class edu.isi.pegasus.planner.dax.MetaData: Get the value of the metdata object
getValue() - Method in class edu.isi.pegasus.planner.dax.Profile: Get the value of this profile
getValue() - Method in class edu.isi.pegasus.planner.invocation.Architecture: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgString: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.Arguments: This abstract method is called by higher-level functions to obtain a single string representation of the arguments.
getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgVector: Returns the full argument vector as one single string.
getValue() - Method in class edu.isi.pegasus.planner.invocation.Boot: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.CommandLine: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.CPU: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.Data: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.File: Accessor
getValue() - Method in interface edu.isi.pegasus.planner.invocation.HasText: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.Ignore: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.Stamp: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.Uname: Accessor
getValue() - Method in class edu.isi.pegasus.planner.invocation.WorkingDir: Accessor
getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.Identifier: Obtains the token value of a given reserved word token.
getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.QuotedString: Obtains the token value of a given string token.
getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: Obtains the token value of a given reserved word token.
getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord: Obtains the token value of a given reserved word token.
getValue() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue: Returns the value associated with this pair.
getValue() - Method in interface edu.isi.pegasus.planner.visualize.Measurement: Returns the value of the measurement.
getValue() - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: Returns the value of the measurement.
getVDS_HOME(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Returns the value of VDS_HOME for a site.
getVDSHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Deprecated.
getVDSHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Deprecated.
getVDSKeyValue() - Method in interface edu.isi.pegasus.planner.code.GridStart: Returns the value of the vds profile with key as VDS.GRIDSTART_KEY, that would result in the loading of this particular implementation.
getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
getVDSProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the VDS properties that were set by the user.
getVDSProperties() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the CommonProperties that this object encapsulates.
getVDSSuperNode() - Method in class edu.isi.pegasus.planner.classes.Job: Returns the name of the compute job of Pegasus supernode containing this job.
getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the sysinfo for the site.
getVDSSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns the VDSSysInfo for the site
getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Returns the System Information in the old VDS format associated with the transformation.
getVdt_version() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getVdt_version() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getVersion() - Method in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback: Returns the condor version detected.
getVersion() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Returns the version
getVersion() - Method in class edu.isi.pegasus.planner.dax.Executable: Get the version of the executablle
getVersion() - Method in class edu.isi.pegasus.planner.dax.File: Get the version of the file
getVersion() - Method in class edu.isi.pegasus.planner.dax.Job
getVersion() - Method in class edu.isi.pegasus.planner.dax.Transformation: Get the version of the transformation
getVersion() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getVersionOfDAX(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: A convenience method that tries to determine the version of the dax schema by reading ahead in the DAX file, and searching for the version attribue in the file.
getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the VO Group.
getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the VO Group to which the user belongs
getVOID(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
getVoInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getVoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage: Accessor: Obtains the voluntary context switches.
getWhat() - Method in class edu.isi.pegasus.planner.dax.Invoke: Get what to invoke
getWhen() - Method in class edu.isi.pegasus.planner.dax.Invoke: Get when to Invoke
getWingsPropertiesFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the path to the wings properties file.
getWingsRequestID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns the request id.
getWntmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
getWntmp_loc() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
getWorkerNodeDirectory(Job) - Method in interface edu.isi.pegasus.planner.code.GridStart: Returns the directory in which the job executes on the worker node.
getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Returns the exectionSiteDirectory in which the constituentJob executes on the worker node.
getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Returns the directory in which the job executes on the worker node.
getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Returns the directory in which the job executes on the worker node.
getWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Returns the worker node filesystem.
getWorkerPackageMap() - Method in class edu.isi.pegasus.planner.classes.PegasusBag: A convenice method to get the worker package
getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch: Returns the directory shared amongst the worker nodes only.
getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage: Returns the directory shared amongst the worker nodes only.
getWorkflow() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Returns a reference to the workflow that is being refined by the refiner.
getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: Returns a reference to the workflow that is being refined by the refiner.
getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Returns a reference to the workflow that is being refined by the refiner.
getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: Returns a reference to the workflow that is being refined by the refiner.
getWorkflow() - Method in interface edu.isi.pegasus.planner.refiner.Refiner: Returns a reference to the workflow that is being refined by the refiner.
getWorkflow() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Returns a reference to the workflow that is being refined by the refiner.
getWorkflowFileName(PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Constructs the basename to a workflow file that.
getWorkflowLabel() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the metrics about the workflow.
getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.DagInfo: Returns the workflow metrics so far.
getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics: Returns the workflow metrics.
getWorkflowTimestamp() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns the UUID for the workflow
getWorkingDirectory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor
getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract: Returns an open stream to the file that is used for writing out the job information for the job.
getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.HashedFile: Returns an open stream to the file that is used for writing out the job information for the job.
getXMLProducer() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
getXMLProducer() - Method in interface edu.isi.pegasus.planner.refiner.Refiner: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
getXMLProducer() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
gftp - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
gftp - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
gk_port - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
gk_port - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
glibc - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo: Glibc version of the system
GLIDEIN_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a glidein execution.
GLIDEIN_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the Condor GlideIN Style.
GLIDEINWMS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a glideinwms execution.
GLIDEINWMS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the Condor GlideinWMS Style.
GLite - Class in edu.isi.pegasus.planner.code.generator.condor.style: This implementation enables a job to be submitted via gLite to a grid sites.
GLite() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.GLite: The default Constructor.
GLITE_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a glite execution.
GLITE_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the CondorG Style.
globallyIgnored(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns a boolean indicating whether a site is to be ignored as a replica source for all compute sites.
globallyPreferred(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns a boolean indicating whether a site is a preferred replica source for all compute sites.
GLOBUS - Static variable in class edu.isi.pegasus.planner.classes.Profile
Globus - Class in edu.isi.pegasus.planner.namespace: This helper class helps in handling the globus rsl key value pairs that come through profile information for namespace Globus.
Globus() - Constructor for class edu.isi.pegasus.planner.namespace.Globus: The default constructor.
Globus(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Globus: The overloaded constructor
globus_loc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
globus_loc - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
GLOBUS_SCHEDULER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints: The globus scheduler hints key
GLOBUS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The style indicating that the submit files are to be generated for a CondorG execution.
GLOBUS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: The name of the class implementing the CondorG Style.
GLOBUS_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The condor universe key value for vanilla universe.
GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The constant to be passed to the accessor functions to get or set the globus version of the grid ftp server.
GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the globus version.
globusRSL - Variable in class edu.isi.pegasus.planner.classes.Job: The namespace object containing the globus rsl attributes which the user specifies in the dax, or the pool file or the properties file.
globusScheduler - Variable in class edu.isi.pegasus.planner.classes.Job: The globus Scheduler for the job.
GlobusVersion - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes: This is a data class that stores the globus version installed and to be used on a particular pool for the gridftp server or the jobmanagers.
GlobusVersion() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: The default constructor.
GlobusVersion(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: Overloaded constructor for the class;
GlobusVersion(int, int, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: Constructor to set the version information
Graph - Interface in edu.isi.pegasus.planner.partitioner.graph: The interface for the Graph Class.
GraphNode - Class in edu.isi.pegasus.planner.partitioner.graph: Data class that allows us to construct information about the nodes in the abstract graph.
GraphNode() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The default constructor.
GraphNode(String, GraphNodeContent) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The overloaded constructor.
GraphNode(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The overloaded constructor.
GraphNodeContent - Interface in edu.isi.pegasus.planner.partitioner.graph: This inteface defines a common base for all the classes that can reside in a GraphNode object.
GRAY_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Grid - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
GRID_DN_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump: The Grid DN of the user.
GRID_JOB_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the key that specifies the grid job type.
GRID_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The name of the key that determines whether we keep the tmp xml file around or not.
GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The condor key for designation the grid_resource.
grid_services - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
grid_services - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
GRID_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The condor universe key value for grid universe.
GRIDFTP - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The constant to be passed to the accessor functions to get or set the list of GridFTP objects for the remote site.
GRIDFTP - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: token value for the reserved word "gridftp".
GRIDFTP_RESOURCE - Static variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest: The type identifying that the resource to authenticate against is a grid ftp server.
GRIDFTP_URL - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The constant to be passed to the accessor functions to get or set the url.
GridFTPBandwidth - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes: This is a data class to store information about gridftp bandwidths between various sites.
GridFTPBandwidth() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
GRIDFTPBANDWIDTHINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
GRIDFTPINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: Array storing the names of the attributes that are stored with the grid ftp server.
GridFTPServer - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes: This is a data class that is used to store information about a grid ftp server.
GridFTPServer() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The default constructor.
GridGateway - Class in edu.isi.pegasus.planner.catalog.site.classes: This class describes the Grid Gateway into a site.
GridGateway() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The default constructor.
GridGateway(GridGateway.TYPE, String, GridGateway.SCHEDULER_TYPE) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The overloaded constructor.
GridGateway.JOB_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes: An enumeration of types of jobs handled by an instance of a grid gateway.
GridGateway.JOB_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
GridGateway.SCHEDULER_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes: An enumeration of valid schedulers on the grid gateway.
GridGateway.SCHEDULER_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
GridGateway.TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes: An enumeration of valid types of grid gateway.
GridGateway.TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The constant to be passed to the accessor functions to get or set the path to kickstart.
GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: token value for the reserved word "gridlaunch".
gridstart(PrintWriter, Job, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: This function creates the stdio handling with and without gridstart.
GridStart - Interface in edu.isi.pegasus.planner.code: The interface that defines how a job specified in the abstract workflow is launched on the grid.
gridStart(String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Returns the cached implementation of GridStart from the implementing class table.
GRIDSTART_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key, that determines the arguments with which the GridStart that is used to launch a job on the remote site is invoked with.
GRIDSTART_IMPLEMENTING_CLASSES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The known gridstart implementations.
GRIDSTART_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key that determines the launching executable to be used to launch a job on the grid.
GRIDSTART_MAINJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The MAINJOB data index.
GRIDSTART_MAINJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The MAINJOB data index.
GRIDSTART_MAINJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The state in the jobstate that is taken to designate the GRIDSTART_MAINJOB time.
GRIDSTART_MAINJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The state in the jobstate that is taken to designate the GRIDSTART_MAINJOB time.
GRIDSTART_PATH_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key that designates the path to a gridstart.
GRIDSTART_POSTJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The POSTJOB data index.
GRIDSTART_POSTJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The POSTJOB data index.
GRIDSTART_POSTJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The state in the jobstate that is taken to designate the GRIDSTART_POSTJOB time.
GRIDSTART_POSTJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The state in the jobstate that is taken to designate the GRIDSTART_POSTJOB time.
GRIDSTART_PREJOB - Static variable in class edu.isi.pegasus.planner.namespace.ENV: The name of the environment variable that specifies the Gridstart PREJOB.
GRIDSTART_PREJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The PREJOB data index.
GRIDSTART_PREJOB_EVENT_TYPE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The PREJOB data index.
GRIDSTART_PREJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The state in the jobstate that is taken to designate the GRIDSTART_PREJOB time.
GRIDSTART_PREJOB_STATE - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The state in the jobstate that is taken to designate the GRIDSTART_PREJOB time.
GRIDSTART_SHORT_NAMES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The corresponding short names for the implementations.
GridStartFactory - Class in edu.isi.pegasus.planner.code: An abstract factory class to load the appropriate type of GridStart implementations, and their corresponding POSTScript classes.
GridStartFactory() - Constructor for class edu.isi.pegasus.planner.code.GridStartFactory: The default constructor.
GridStartFactoryException - Exception in edu.isi.pegasus.planner.code: Class to notify of failures while instantiating GridStart implementations.
GridStartFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException: Constructs a GridStartFactoryException with no detail message.
GridStartFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException: Constructs a GridStartFactoryException with the specified detailed message.
GridStartFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException: Constructs a GridStartFactoryException with the specified detailed message and a cause.
GridStartFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException: Constructs a GridStartFactoryException with the specified detailed message and a cause.
gridTypeID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
Group - Class in edu.isi.pegasus.planner.selector.site: A site selector than ends up doing grouping jobs together on the basis of an identifier specifed in the dax for the jobs, and schedules them on to the same site.
Group() - Constructor for class edu.isi.pegasus.planner.selector.site.Group: The default constructor.
GROUP_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key in vds namespace that does the grouping.
gsiftp_port - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
gsiftp_port - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
gsiftp_server - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
GUC - Class in edu.isi.pegasus.planner.transfer.implementation: The implementation that is used to create transfer jobs that callout to the new globus-url-copy client, that support multiple file transfers
GUC(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.GUC: The overloaded constructor, that is called by the Factory to load the class.
Gvds_Pool_Gridlaunch - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_Lrc - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_Profile - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_Storage - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_Universe - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Gvds_Pool_WorkDir - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery

H

HANDLE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The name of the remote site.
handleAdagTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the adag element is got.
handleArgumentTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the Argument Tag is reached.
handleArgumentTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the Argument Tag is reached.
handleChildTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: This passes the child and it's parents list to the callback object.
handleChildTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the child element is got.
handleCondorVarForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: It updates/adds the condor variables that are got through the Dax with the values specified in the properties file, pool config file or adds some variables internally.
handleConfigTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the end of the Xml files.
handleConfigTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the end of the Xml files.
handleConfigTagStart() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handleConfigTagStart() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleDAGTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the dag tag is reached.
handleDAGTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the dax element is retrieved.
handleDAXTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the job tag is reached.
handleDAXTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the dax element is retrieved.
handleDependantExecutables(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Handles the dependant executables that need to be staged.
handleEnvVarForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: It updates/adds the environment variables that are got through the Dax with the values specified in the properties file, pool config file or adds some variables internally.
handleExecutionTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the execution element is reached.
handleExecutionTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Replaces the keys associated with the execution tag, with the corresponding keys in the hints profile namespace
handleFilenameTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the filename element is got.
handleGlobusRSLForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: It updates/adds the the Globus RSL parameters got through the dax that are in Job object.
handleGridFtpBandwidthTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handleGridFtpBandwidthTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleGridFtpBandwidthTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: sk added function to handle gridftpbandwidth tag
handleGridFtpBandwidthTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: sk added function to handle gridftpbandwidth tag
handleGridFtpTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: sk made changes to the following function to set GRIDFTPServer instead of setting it in fn handleGridFtpTagStart()
handleGridFtpTagEnd() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: sk made changes to the following function to set GRIDFTPServer instead of setting it in fn handleGridFtpTagStart()
handleGridFtpTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handleGridFtpTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleJobManagerTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the end of the JobManager Tag
handleJobManagerTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the end of the JobManager Tag
handleJobManagerTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: This method handles the start of a jobmanager tag.
handleJobManagerTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: This method handles the start of a jobmanager tag.
handleJobTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the job tag is reached.
handleJobTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the job element is got.
handleJobTagStart(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the job element is got.
handleLRCTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the end of the LRC Tag
handleLRCTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the end of the LRC Tag
handleLRCTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handleLRCTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleMetadataTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Resets the text content buffer
handleMetadataTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Metadata parsing is ignored for time being.
handleParentTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the parent element is got.
handlePoolTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the end of the pool tag.
handlePoolTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the end of the pool tag.
handlePoolTagStart(PoolConfig, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handlePoolTagStart(PoolConfig, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleProfileTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the end of the Profile tag.
handleProfileTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the end of the Profile tag.
handleProfileTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the end of the profile element is got.
handleProfileTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
handleProfileTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
handleProfileTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the profile element is got.
handleRescueDAG(ADag, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner: Checks for rescue dags, and determines whether to plan or not.
handleRescueDAG(String, String, int) - Method in class edu.isi.pegasus.planner.client.CPlanner: Checks for rescue dags, and determines whether to submit a rescue dag or not.
handleStderrTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the stdout tag is reached.
handleStdinTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the stdin tag is reached.
handleStdoutTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the stdout tag is reached.
handleTransferOfExecutable(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: It changes the paths to the executable depending on whether we want to transfer the executable or not.
handleTransferOfExecutable(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: It changes the paths to the executable depending on whether we want to transfer the executable or not.
handleUsesPFNTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when start of the pfn element nested in uses element is encountered
handleUsesTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Handles the end of a uses tag.
handleUsesTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Invoked when the starting of the uses element is got.
handleWorkDirectoryTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: This method handles the Workdirectory tg end.
handleWorkDirectoryTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: This method handles the Workdirectory tg end.
handleWorkDirectoryTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Handles the WorkDirectory Tag Start.
handleWorkDirectoryTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser: Handles the WorkDirectory Tag Start.
hasAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Checks for the existence of an attribute key.
HasDescriptor - Interface in edu.isi.pegasus.planner.invocation: This interface defines a common base for all File elements in an invocation record that carry a descriptor in their values.
HasFilename - Interface in edu.isi.pegasus.planner.invocation: This interface defines a common base for all File elements in an invocation record that carry a filename in their values.
hashCode() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
hashCode() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
hashCode() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation: Calculate a hash code value for the object to support hash tables.
hashCode() - Method in class edu.isi.pegasus.planner.classes.PegasusFile: Calculate a hash code value for the object to support hash tables.
hashCode() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
hashCode() - Method in class edu.isi.pegasus.planner.dax.Executable
hashCode() - Method in class edu.isi.pegasus.planner.dax.File: HashCode of this File
hashCode() - Method in class edu.isi.pegasus.planner.dax.Parent
hashCode() - Method in class edu.isi.pegasus.planner.dax.Transformation
HashedFile - Class in edu.isi.pegasus.planner.code.generator: A Condor Submit Writer, that understands the notion of hashed file directories.
HashedFile() - Constructor for class edu.isi.pegasus.planner.code.generator.HashedFile: The default constructor.
hasMatchingAttr(ReplicaCatalogEntry, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Looks for a match of an attribute value in a replica catalog entry.
hasMoreTokens() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner: Checks for the availability of more input.
hasMoreTokens() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner: Checks for the availability of more input.
hasNext() - Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator: Always returns false, as an empty iterator.
hasNext() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator: Always returns false, as an empty iterator.
hasNext() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: Returns whether there are more nodes to be traversed in the graph or not.
HasText - Interface in edu.isi.pegasus.planner.invocation: This interface defines a common base for all elements in an invocation record that can carry text in their values.
hasWorkflowRefinementStarted() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns a boolean indicating whether the workflow refinement has started or not
HEAD_INDEX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The index of the head job.
HeadNodeFS - Class in edu.isi.pegasus.planner.catalog.site.classes: This data class describes the HeadNode Filesystem layout.
HeadNodeFS() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: The default constructor.
HeadNodeFS(HeadNodeScratch, HeadNodeStorage) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: The overloaded constructor.
HeadNodeScratch - Class in edu.isi.pegasus.planner.catalog.site.classes: This data class describes the scratch area on a head node.
HeadNodeScratch() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch: The default constructor
HeadNodeScratch(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch: The overloaded constructor
HeadNodeScratch(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch: The overloaded constructor.
HeadNodeStorage - Class in edu.isi.pegasus.planner.catalog.site.classes: This data class describes the storage area on a node.
HeadNodeStorage() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage: The default constructor
HeadNodeStorage(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage: The overloaded constructor
HeadNodeStorage(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage: The overloaded constructor.
HEFT(int) - Method in class edu.isi.pegasus.planner.provisioner.Estimator
Heft - Class in edu.isi.pegasus.planner.selector.site: The HEFT based site selector.
Heft() - Constructor for class edu.isi.pegasus.planner.selector.site.Heft: The default constructor.
HeftBag - Class in edu.isi.pegasus.planner.selector.site.heft: A data class that implements the Bag interface and stores the extra information that is required by the HEFT algorithm for each node.
HeftBag() - Constructor for class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The default constructor.
HeftGraphNodeComparator - Class in edu.isi.pegasus.planner.selector.site.heft: Comparator for GraphNode objects that allow us to sort on basis of the downward rank computed.
HeftGraphNodeComparator() - Constructor for class edu.isi.pegasus.planner.selector.site.heft.HeftGraphNodeComparator
HEFTINFO - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: Array storing the names of the attributes that are stored with the site.
HIGHEST_RANK_VALUE - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex: The highest value of rank.
hints - Variable in class edu.isi.pegasus.planner.classes.Job: To accomodate all the hints that maybe passed through the DAX.
HINTS - Static variable in class edu.isi.pegasus.planner.classes.Profile
Hints - Class in edu.isi.pegasus.planner.namespace: An empty mechanical implementation for the namespace.
Hints() - Constructor for class edu.isi.pegasus.planner.namespace.Hints: The default constructor.
Hints(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Hints: The overloaded constructor.
Horizontal - Class in edu.isi.pegasus.planner.cluster: The horizontal clusterer, that clusters jobs on the same level.
Horizontal() - Constructor for class edu.isi.pegasus.planner.cluster.Horizontal: The default constructor.
Horizontal - Class in edu.isi.pegasus.planner.partitioner: Horizontal based partitioning scheme, that allows the user to configure the number of partitions per transformation name per level.
Horizontal(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Horizontal: The overloaded constructor.
Horizontal.GraphNodeComparator - Class in edu.isi.pegasus.planner.partitioner: A GraphNode comparator, that allows me to compare nodes according to the transformation logical names.
Horizontal.GraphNodeComparator() - Constructor for class edu.isi.pegasus.planner.partitioner.Horizontal.GraphNodeComparator
Horizontal.JobComparator - Class in edu.isi.pegasus.planner.cluster: A job comparator, that allows me to compare jobs according to the transformation names.
Horizontal.JobComparator() - Constructor for class edu.isi.pegasus.planner.cluster.Horizontal.JobComparator
HORIZONTAL_CLUSTERING_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory: The name of the class implementing horizontal clustering.
HORIZONTAL_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: The name of the class that does horizontal based partitioning.
Host_Subnet_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
HourGlass - Class in edu.isi.pegasus.planner.refiner.createdir: This class inserts the nodes for creating the random directories on the remote execution pools.
HourGlass() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.HourGlass
HOURS_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The minutes unit for the x axis.
HOURS_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The minutes unit for the x axis.

I

ID - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
id - Variable in class edu.isi.pegasus.planner.provisioner.Node
idCounter() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Returns the current value of the ID counter.
Identifier - Class in edu.isi.pegasus.planner.parser.tokens: Class to capture reserved words.
Identifier(String) - Constructor for class edu.isi.pegasus.planner.parser.tokens.Identifier: Initializes an instance of an identifier.
IDLE_NODES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the idle nodes.
ignorableWhitespace(char[], int, int) - Method in class edu.isi.pegasus.planner.client.DAXValidator
ignorableWhitespace(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: Currently, ignorable whitespace will be ignored.
Ignore - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
Ignore() - Constructor for class edu.isi.pegasus.planner.invocation.Ignore: Default c'tor.
Ignore(String) - Constructor for class edu.isi.pegasus.planner.invocation.Ignore: Constructs a piece of data.
ignore(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman: Helper method to decide whether a key has to be ignored or not.
ignore(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted: Returns a boolean indicating whether a source site is to be ignored for staging to a destination site
ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Our own implementation for ignorable whitespace.
ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Our own implementation for ignorable whitespace.
ignoreWhitespace(String, boolean) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Our own implementation for ignorable whitespace.
ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.Parser: Our own implementation for ignorable whitespace.
ignoreWhitespace(String, boolean) - Method in class edu.isi.pegasus.planner.parser.Parser: Our own implementation for ignorable whitespace.
Implementation - Interface in edu.isi.pegasus.planner.refiner.createdir: The interface that defines how the create dir job is created.
Implementation - Interface in edu.isi.pegasus.planner.transfer: The interface defines the functions that a particular Transfer Implementation should implement.
ImplementationFactory - Class in edu.isi.pegasus.planner.transfer.implementation: The factory class that loads an appropriate Transfer Immplementation class, as specified by the properties.
ImplementationFactory() - Constructor for class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
implementingClassNameTable() - Static method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: Returns a table that maps, the credential types to the implementing classes.
implementingClassNameTable() - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: Returns a table that maps, the Pegasus style keys to the names of implementing classes.
implementingClassNameTable() - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: Returns a table that maps, the Pegasus style keys to the names of implementing classes.
implementingPOSTScriptClass(String) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory: Returns the name of the implementing POSTSCript class.
incorporateHint(Job, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: It incorporates a hint in the namespace to the job.
incorporateProfiles(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Incorporates the profiles from the various sources into the job.
increment(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics: Increment the metrics when on the basis of type of job.
increment() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue: Increments the int value by one.
incrementIDCounter() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal: Increments the ID counter by 1.
incrementLogging() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Increments the logging level by 1.
incrementLogging() - Method in class edu.isi.pegasus.planner.client.SCClient: Increments the logging level by 1.
incrementLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter: Increments the logging level by 1.
INDENT - Static variable in class edu.isi.pegasus.common.util.XMLWriter
indent(int) - Method in class edu.isi.pegasus.common.util.XMLWriter
index - Variable in class edu.isi.pegasus.planner.classes.DagInfo: Refers to the number of the Dag.
index(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: Returns the index of a particular node.
index(String) - Method in class edu.isi.pegasus.planner.partitioner.Topological: Returns the index of a particular node.
inEdges - Variable in class edu.isi.pegasus.planner.provisioner.Node
INFO_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager: The level value, to indicate a INFO message.
INFO_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default: The type value to indicate an INFORMATIVE message.
infoAboutAllFilesRecv - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: A boolean variable set to true when we have got all the logical filenames.
init() - Static method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
init(MYOSGSiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
init() - Method in class edu.isi.pegasus.planner.provisioner.Edge: initiate bit and completion time variable used bt HEFT algorithm
init() - Method in class edu.isi.pegasus.planner.provisioner.Node
init() - Method in class VersionTask: Initializes the member variables for an ant task.
initalize(String[]) - Method in class edu.isi.pegasus.planner.client.PartitionDAX: Initialize the PartitionDax object
initialiseList(List) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin: It initialises the internal list.
initialize(PegasusBag) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler: Initializes the credential implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: Initializes the Factory.
initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.Abstract: Initializes the credential implementation.
initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.logger.Default: Sets the log formatter to use for formatting the messages.
initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Sets the log formatter to use for formatting the messages.
initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.LogManager: Sets the log formatter to use for formatting the messages.
initialize(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection: Initializes the object.
initialize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Initializes the object
initialize(List<FileServer>, InternalMountPoint) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: Initializes the object
initialize(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Initialize the class.
initialize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Initializes the object.
initialize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: The intialize method.
initialize() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: Intializes the store.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Initialize the implementation, and return an instance of the implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Initialize the implementation, and return an instance of the implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Initialize the implementation, and return an instance of the implementation.
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Initialize the implementation, and return an instance of the implementation.
initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.CPlanner
initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.Executable: Initialize the executable object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.Executable: Initialize the executable object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode: Initialize the NetloggerExitCode object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.PlotNodeUsage: Initialize the PlotNodeUsage object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage: Initialize the PlotSpaceUsage object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.RankDAX
initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.RCClient: Initialize the RCClient object
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.SCClient
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.TCClient
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.TCConverter
initialize(String[]) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.Abstract: Initializes the Clusterer impelementation
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Initializes the JobAggregator impelementation
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: Initializes the Factory.
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Initializes the JobAggregator impelementation
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Initializes the JobAggregator impelementation
initialize(ADag, PegasusBag) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer: Initializes the Clusterer impelementation
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Initializes the Clusterer impelementation
initialize(ADag, PegasusBag) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Initializes the JobAggregator impelementation
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Initializes the Code Generator implementation.
initialize(PegasusBag, CredentialHandlerFactory) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle: Initializes the Code Style implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: Initializes the Factory.
initialize(PegasusBag, CredentialHandlerFactory) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Initializes the Code Style implementation.
initialize(PegasusBag, CredentialHandlerFactory) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor: Initializes the Code Style implementation.
initialize(PegasusBag, ADag, Graph, PrintWriter) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Initializes the class.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Metrics: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Shell: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Stampede: Initializes the Code Generator implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Stork: Initializes the Code Generator implementation.
initialize(PegasusBag, ADag) - Method in interface edu.isi.pegasus.planner.code.GridStart: Initializes the GridStart implementation.
initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Initializes the GridStart implementation.
initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: Initialize the POSTScript implementation.
initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Initializes the GridStart implementation.
initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript: Initialize the POSTScript implementation.
initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Initializes the GridStart implementation.
initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: Initialize the POSTScript implementation.
initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: Initialize the POSTScript implementation.
initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Initializes the factory with known GridStart implementations.
initialize(PegasusProperties, String, String) - Method in interface edu.isi.pegasus.planner.code.POSTScript: Initialize the POSTScript implementation.
initialize(PegasusProperties, Clusterer) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback: Initializes the callback.
initialize() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: Initializes the inDegree for each node of the partition.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Initializes the class.
initialize() - Method in class edu.isi.pegasus.planner.partitioner.Topological: Initializes the inDegree for each node of the partition.
initialize(PegasusProperties, String, String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback: Initializes the Writer Callback.
initialize(String, boolean) - Method in class edu.isi.pegasus.planner.provenance.NetloggerCallback: Initializes the callback.
initialize(PegasusBag, List, String) - Method in class edu.isi.pegasus.planner.ranking.Rank: Initializes the rank client.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Creates a new instance of InPlace
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation: Intializes the class.
initialize(PegasusBag, CleanupImplementation) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy: Intializes the class.
initialize(PegasusBag, CleanupImplementation) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: Intializes the class.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM: Intializes the class.
initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: Intializes the class.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: Intializes the class.
initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: Intializes the class.
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Implementation: Intializes the class.
initialize(PegasusBag, Implementation) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Strategy: Intializes the class.
initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.Tentacles: Intializes the class.
initialize(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Initialize with the scheduled graph.
initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Intialises the refiner.
initialize(ADag, PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Intialises the refiner.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Abstract: Initializes the site selector.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Group: Initializes the site selector.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Heft: Initializes the site selector.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Initializes the site selector.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Random: Initializes the site selector.
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector: Initializes the site selector.
initialize(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: Initializes the implementation
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Initializes the SLS implementation.
initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Initializes the SLS implementation.
initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Initializes the SLS implementation.
initialize(String, boolean) - Method in interface edu.isi.pegasus.planner.visualize.Callback: Initializes the callback.
initialize(String, boolean) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Initializes the callback.
initialize(String, String, boolean) - Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: Initializer method.
initialize(String, String, boolean) - Method in interface edu.isi.pegasus.planner.visualize.spaceusage.Plot: Initializer method.
initialize(String, String, boolean) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: Initializer method.
initialize(String, boolean) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Initializes the callback.
initialize(String, boolean) - Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: Initializes the callback.
initializeBundleValues() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Initializes the bundle value variables, that are responsible determining the bundle values.
initializeBundleValues() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Initializes the bundle value variables, that are responsible determining the bundle values.
initializeDagFileWriter(String, DagInfo) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Initializes the file handler to the dag file and writes the header to it.
initializeDatabase(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Initialize the database with given .sql file
initializePropertyFile(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Gets the handle to the properties file.
initializeStageOutSiteDirectoryFactory(ADag) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine: Initialize the Stageout Site Directory factory.
initializeTransientRC(ADag) - Method in class edu.isi.pegasus.planner.refiner.MainEngine: Initializes the transient replica catalog and returns a handle to it.
initializeWriteHandle(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell: It initializes the write handle to the output file.
initializeWriteHandle(int) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter: This initializes the write handle a file in directory specified when creating the instance of this class.
initializeWriteHandle(String) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter: This initializes the write handle to the file in directory specified when creating the instance of this class.
initOut(boolean, long) - Method in class edu.isi.pegasus.planner.provisioner.Node: notify child nodes that this task will finish at time et
InMemory - Class in edu.isi.pegasus.planner.provenance.pasoa.producer: An implementation of the XMLProducer interface backed by a StringBuffer.
InMemory() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: The default constructor.
InMemory(int) - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: The overloaded constructor.
InPlace - Class in edu.isi.pegasus.planner.refiner.cleanup: This generates cleanup jobs in the workflow itself.
InPlace() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The default constructor.
inputFiles - Variable in class edu.isi.pegasus.planner.classes.Job: Contains the input files for the submit file.
insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Inserts a new mapping into the replica catalog.
insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Inserts a new mapping into the replica catalog.
insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Inserts multiple mappings into the replica catalog.
insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Inserts a new mapping into the replica catalog.
insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Inserts a new mapping into the replica catalog.
insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Inserts multiple mappings into the replica catalog.
insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Inserts a new mapping into the replica catalog.
insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Inserts a new mapping into the replica catalog.
insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Inserts multiple mappings into the replica catalog.
insert(String, ReplicaCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Inserts a new mapping into the replica catalog.
insert(String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Inserts a new mapping into the replica catalog.
insert(Map) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Inserts multiple mappings into the replica catalog.
insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Not implemented as yet.
insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Not implemented as yet.
insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Not implemented as yet.
insert(SiteCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog: Inserts a new mapping into the Site catalog.
insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add multiple TCEntries to the Catalog.
insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add single TCEntry to the Catalog.
insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add single TCEntry object temporarily to the in memory Catalog.
insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Add an single entry into the transformation catalog.
insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add multiple TCEntries to the Catalog.
insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add single TCEntry to the Catalog.
insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add single TCEntry object temporarily to the in memory Catalog.
insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Add an single entry into the transformation catalog.
insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add multiple TCEntries to the Catalog.
insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add single TCEntry to the Catalog.
insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add single TCEntry object temporarily to the in memory Catalog.
insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Add an single entry into the transformation catalog.
insert(List<TransformationCatalogEntry>) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add multiple TCEntries to the Catalog.
insert(TransformationCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add single TCEntry to the Catalog.
insert(TransformationCatalogEntry, boolean) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add single TCEntry object temporarily to the in memory Catalog.
insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Add an single entry into the transformation catalog.
insert(String, String, String, String, String, Date, Date, int) - Method in class edu.isi.pegasus.planner.catalog.work.Database: Inserts a new mapping into the work catalog.
insert(String, String, String, String, String, Date, Date, int) - Method in interface edu.isi.pegasus.planner.catalog.WorkCatalog: Inserts a new mapping into the work catalog.
insert(Job) - Method in class edu.isi.pegasus.planner.selector.site.Group: Inserts the job into the group map.
Installed - Class in edu.isi.pegasus.planner.catalog.transformation.mapper: This class only generates maps for sites with installed transformations.
Installed(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed: The protected constructor.
Installed - Class in edu.isi.pegasus.planner.selector.transformation: This implementation of the Selector returns a list of TransformationCatalogEntry objects of type INSTALLED y on the submit site.
Installed() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Installed
instance() - Static method in class edu.isi.pegasus.common.util.CommonProperties: Singleton threading: Creates the one and only instance of the properties in the current application.
instance() - Static method in class edu.isi.pegasus.common.util.Version: Accessor to the singleton.
instantiate(Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader: Dynamically instantiates a class from a contructor.
instantiate(Class[], Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader: Dynamically instantiates a class from a contructor.
INTEL32 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
INTEL64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
INTER_POOL_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job: Denotes a job that transfers the output of a compute node to the site where the child compute node is to be generated.
INTER_POOL_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner: The prefix for the jobs which are added to transfer the files generated by the parents of a job to the jobs execution pool.
INTER_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState: The constant to denote that an inter site transfer is to be exectuted remotely
INTER_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT: The property name to get the sites for which inter site transfers need to be TPT.
INTER_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState: The constant to denote that an inter site transfer is to be executed on the remote site.
INTER_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT: The property name to get the sites for which inter site TPT transfers need to be executed on the remote site.
INTER_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState: The constant to denote that an inter site transfer is to be third party.
INTER_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The property name to get the sites for which inter site transfers need to be executed remotely.
InternalMountPoint - Class in edu.isi.pegasus.planner.catalog.site.classes: A data class to signify the Internal Mount Point for a filesystem.
InternalMountPoint() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint: The default constructor.
InternalMountPoint(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint: The overloaded constructor.
InternalMountPoint(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint: The overloaded constructor.
interOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer: Returns a boolean indicating whether to execute inter site transfers on remote site or not.
InterPoolEngine - Class in edu.isi.pegasus.planner.refiner: This engine calls out to the Site Selector selected by the user and maps the jobs in the workflow to the execution pools.
InterPoolEngine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.InterPoolEngine: Default constructor.
InterPoolEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.InterPoolEngine: Overloaded constructor.
interThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT: Returns a boolean indicating whether to use third party transfers for inter site transfers or not.
interThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT: Returns a boolean indicating whether to execute third party transfers for inter site on remote site or not.
intialize(String[]) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites: Initialize the PegasusGetSites object
introduceRootDependencies(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: It traverses through the root jobs of the dag and introduces a new super root node to it.
intValue(String) - Static method in class edu.isi.pegasus.common.util.CondorVersion: Deprecated.
invalidAttribute(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser: Logs a message if an unknown key is come across, while parsing the xml document.
invalidValue(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser: Logs a message if an unknown value is come across, while parsing the xml document.
INVOCATION - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The constant string to write for invocation notifications.
Invocation - Class in edu.isi.pegasus.planner.invocation: This abstract class defines a common base for all invocation record related Java objects.
Invocation() - Constructor for class edu.isi.pegasus.planner.invocation.Invocation
InvocationParser - Class in edu.isi.pegasus.planner.parser: This class uses the Xerces SAX2 parser to validate and parse an XML document which contains information from kickstart generated invocation record.
InvocationParser(String) - Constructor for class edu.isi.pegasus.planner.parser.InvocationParser: The class constructor.
InvocationRecord - Class in edu.isi.pegasus.planner.invocation: This class is the container for an invocation record.
InvocationRecord() - Constructor for class edu.isi.pegasus.planner.invocation.InvocationRecord: Default c'tor: Construct a hollow shell and allow further information to be added later.
invocationString(Job, File) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Constructs a command line invocation for a job, with a given sls file.
invocationString(Job, File) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Constructs a command line invocation for a job, with a given sls file.
invocationString(Job, File) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Constructs a command line invocation for a job, with a given sls file.
Invoke - Class in edu.isi.pegasus.planner.dax: The Notification invoke object for the Dax API
Invoke(Invoke) - Constructor for class edu.isi.pegasus.planner.dax.Invoke: Copy Constructor
Invoke(Invoke.WHEN) - Constructor for class edu.isi.pegasus.planner.dax.Invoke: Crete a new Invoke object
Invoke(Invoke.WHEN, String) - Constructor for class edu.isi.pegasus.planner.dax.Invoke: Create a new Invoke object
Invoke.WHEN - Enum in edu.isi.pegasus.planner.dax: WHEN To INVOKE
Invoke.WHEN() - Constructor for enum edu.isi.pegasus.planner.dax.Invoke.WHEN
Irods - Class in edu.isi.pegasus.common.credential.impl: A convenience class that allows us to determine the path to the user irodsEnvFile file.
Irods() - Constructor for class edu.isi.pegasus.common.credential.impl.Irods: The default constructor.
IRODS_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
IRODSENVFILE - Static variable in class edu.isi.pegasus.common.credential.impl.Irods: The name of the environment variable that specifies the path to the s3cfg file.
isAnc(Node) - Method in class edu.isi.pegasus.planner.provisioner.Node
isBottom() - Method in class edu.isi.pegasus.planner.provisioner.Node: Check whether this task is the exit task or not.
isClosed() - Method in interface edu.isi.pegasus.planner.catalog.Catalog: Predicate to check, if the connection with the catalog's implementation is still active.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Predicate to check, if the connection with the catalog's implementation is still active.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Predicate to check, if the connection with the catalog's implementation is still active.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Predicate to check, if the connection with the catalog's implementation is still active.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Returns if the connection is closed or not.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Returns if the connection is closed or not.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Returns if the connection is closed or not.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Returns if the connection is closed or not.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Returns whether the connection is closed or not.
isClosed() - Method in class edu.isi.pegasus.planner.catalog.work.Database: Predicate to check, if the connection with the catalog's implementation is still active.
isClosed() - Method in class edu.isi.pegasus.planner.ranking.GetDAX: Predicate to check, if the connection with the catalog's implementation is still active.
isColor(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: Returns if the color of the node is as specified.
isDAG() - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Is this Object a DAG
isDAG() - Method in class edu.isi.pegasus.planner.dax.DAG: Is this Object a DAG
isDAX() - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Is this Object a DAX
isDAX() - Method in class edu.isi.pegasus.planner.dax.DAX: Is this Object a DAX
isDeleted - Variable in class edu.isi.pegasus.planner.classes.PCRelation: this is used for collapsing the dag during the reduction algorithm on the basis of the results returned from the Replica Catalog.
isDes(Node) - Method in class edu.isi.pegasus.planner.provisioner.Node
isEmpty() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles: Returns a boolean indicating if the object is empty.
isEmpty() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: A convenience method that returns true if all the attributes values are uninitialized or empty strings.
isEmpty() - Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint: A convenience method that returns true if all the attributes values are uninitialized or empty strings.
isEmpty() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns whether the workflow is empty or not.
isEmpty() - Method in class edu.isi.pegasus.planner.classes.Notifications: Returns a boolean indicating whether the notifications object is empty or not.
isEmpty() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore: Returns a boolean indicating whether a store is empty or not.
isEmpty() - Method in class edu.isi.pegasus.planner.namespace.Namespace: Returns a boolean indicating if the object is empty.
isEmpty() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Returns a boolean if there are no nodes in the graph.
isEmpty() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns a boolean if there are no nodes in the graph.
isFree() - Method in class edu.isi.pegasus.planner.provisioner.Node: used for DSC algorithm
isIdenticalTo(String, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty: isIdenticalTo
isIdenticalTo(String, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
isInteger(String) - Method in class edu.isi.pegasus.planner.namespace.Condor: Returns a boolean value indicating if the string passed is an integer or not
isJob() - Method in class edu.isi.pegasus.planner.dax.AbstractJob: Is this Object a Job
isJob() - Method in class edu.isi.pegasus.planner.dax.Job: Is this Object a Job
islfn - Variable in class edu.isi.pegasus.planner.client.TCClient
isMPIJob() - Method in class edu.isi.pegasus.planner.classes.Job: Returns a boolean value denoting whether the job is MPI or not.
isNamespaceValid(String) - Static method in class edu.isi.pegasus.planner.namespace.Namespace: Checks if the namespace specified is valid or not.
isNodeIdValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
iso8601(boolean) - Static method in class edu.isi.pegasus.common.util.Currently: Ignores any internal date format, and tries to show a complete date/timp stamp of the current time in extended ISO 8601 format.
iso8601(boolean, boolean, boolean, Date) - Static method in class edu.isi.pegasus.common.util.Currently: Ignores any internal date format, and tries to show a complete date/timp stamp in extended ISO 8601 format.
isoldformat - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
isoldformat - Variable in class edu.isi.pegasus.planner.client.TCClient
isPartitionOf(String, List) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty: isPartitionOf
isPartitionOf(String, List) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
ispfn - Variable in class edu.isi.pegasus.planner.client.TCClient
isprofile - Variable in class edu.isi.pegasus.planner.client.TCClient
isresource - Variable in class edu.isi.pegasus.planner.client.TCClient
isSiteThirdParty(String, int) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Returns whether a Site is third party enabled or not.
isSiteThirdParty(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Returns whether a Site is third party enabled or not.
isSiteValid(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Checks if a give site is valid for a given transformation.
isStackedElement(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
isStageableMapper() - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Returns whether this instance of mapper is an instance of a Stageable mapper or not.
isSupportedFormat(String) - Method in class edu.isi.pegasus.planner.client.TCConverter: Checks if it is a supported transformation catalog format
issysinfo - Variable in class edu.isi.pegasus.planner.client.TCClient
isTop() - Method in class edu.isi.pegasus.planner.provisioner.Node: Check whether this task is the entry task or not.
isTransferringExecutableFile() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Returns a boolean indicating if a file that is being staged is an executable or not (i.e is a data file).
istype - Variable in class edu.isi.pegasus.planner.client.TCClient
isValid() - Method in class edu.isi.pegasus.planner.classes.FileTransfer: Determines whether the transfer contained in this container is valid or not.
isValid(Pattern, String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
isValidArchitecture(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Checks if the architecture is a valid supported architecture
isValidOS(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.SysInfo: Checks if the operating system is a valid supported operating system
isValidSite() - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
isVersionValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
isxml - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
isxml - Variable in class edu.isi.pegasus.planner.client.TCClient
iterateJob() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Enumerates the internal values that constitute the content of the job list.
iterateStatCall() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Enumerates the internal values that constitute the content of the stat list.
iterator() - Method in class edu.isi.pegasus.planner.invocation.Environment: Creates a sorted iterator
iterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph: Returns an iterator that traverses through the graph using a graph traversal algorithm.
iterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: Returns an iterator that traverses through the graph using a graph traversal algorithm.
IterHEFT() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
IVPTest - Class in edu.isi.pegasus.planner.parser: This class is used to test the InvocationParser class.
IVPTest() - Constructor for class edu.isi.pegasus.planner.parser.IVPTest
IVSElement - Class in edu.isi.pegasus.planner.parser: This class keeps the name of an element and its corresponding java object reference.
IVSElement(String, Invocation) - Constructor for class edu.isi.pegasus.planner.parser.IVSElement

J

JAVA_COMMAND_LINE_PROPERTY_REGEX - Static variable in class edu.isi.pegasus.planner.client.CPlanner: The regex used to match against a java property that is set using -Dpropertyname=value in the argument string
JDBCRC - Class in edu.isi.pegasus.planner.catalog.replica.impl: This class implements a replica catalog on top of a simple table in a JDBC database.
JDBCRC(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Convenience c'tor: Establishes the connection to the replica catalog database.
JDBCRC() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Default empty constructor creates an object that is not yet connected to any database.
Job - Class in edu.isi.pegasus.planner.classes: The object of this class holds the information to generate a submit file about one particular job making the Dag.
Job() - Constructor for class edu.isi.pegasus.planner.classes.Job: Intialises the member variables.
Job(Job) - Constructor for class edu.isi.pegasus.planner.classes.Job: Overloaded constructor.
JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The constant string to write for job notifications.
Job - Class in edu.isi.pegasus.planner.dax
Job(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
Job(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
Job(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
Job(Job) - Constructor for class edu.isi.pegasus.planner.dax.Job
Job(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
Job - Class in edu.isi.pegasus.planner.invocation: This class is contains the record from each jobs that ran in every invocation.
Job(String) - Constructor for class edu.isi.pegasus.planner.invocation.Job
JOB_ARGUMENTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_ARGUMENTS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_CLASS_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The class ad for job Class.
JOB_CLUSTER_SIZE_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The class ad to designate the size of the clustered jobs.
JOB_CLUSTERED_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for whether a job is clustered or not
JOB_EDGE_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The event name for job edge
JOB_ENVIRONMENTVARIABLE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_ENVIRONMENTVARIABLE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The event name for a job
JOB_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for the executable
JOB_EXITCODE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_EXITTCODE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for job id
JOB_INPUTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The name of the key that indicates the path to the corresponding submit file for the job.
JOB_MAX_RETRIES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for how many times a job is retried
JOB_NUMBER - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_NUMBER - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_OUTPUTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.classes.DAGJob: The prefix to be attached for the DAX jobs
JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.classes.DAXJob: The prefix to be attached for the DAX jobs
JOB_RESOURCE_INFORMATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
JOB_RESOURCE_INFORMATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
JOB_RUN_TIME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that if set in the Pegasus namespace specifies the approximate runtime of the job.
JOB_RUNTIME_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator: The class ad for the expected job value
JOB_SUBMIT_FILE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: Teh attribute key for the submit file
JOB_TASK_COUNT_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede: The attribute key for the number of tasks in the job
JobAggregator - Interface in edu.isi.pegasus.planner.cluster: The interface that dictates how the jobs are clumped together into one single larger job.
JobAggregatorFactory - Class in edu.isi.pegasus.planner.cluster.aggregator: A factory class to load the appropriate JobAggregator implementations while clustering jobs.
JobAggregatorFactory() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
JobAggregatorFactoryException - Exception in edu.isi.pegasus.planner.cluster.aggregator: Class to notify of failures while instantiating JobAggregator implementations.
JobAggregatorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException: Constructs a JobAggregatorFactoryException with no detail message.
JobAggregatorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException: Constructs a JobAggregatorFactoryException with the specified detailed message.
JobAggregatorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException: Constructs a JobAggregatorFactoryException with the specified detailed message and a cause.
JobAggregatorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException: Constructs a JobAggregatorFactoryException with the specified detailed message and a cause.
JobAggregatorInstanceFactory - Class in edu.isi.pegasus.planner.cluster.aggregator: A JobAggergator factory that caches up the loaded implementations.
JobAggregatorInstanceFactory() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: The default constructor.
jobClass - Variable in class edu.isi.pegasus.planner.classes.Job: The type of the job.
jobComparator() - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Singleton access to the job comparator.
jobID - Variable in class edu.isi.pegasus.planner.classes.Job: Identifies of which Pegasus Super Node is a job associated with.
jobIterator() - Method in class edu.isi.pegasus.planner.classes.ADag: Returns an iterator for traversing through the jobs in the workflow.
JobManager - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes: This is a data class that is used to store information about a jobmanager and the information that it reports about a remote pool.
JobManager() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: Default constructor for the class.
JOBMANAGER - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The constant to be passed to the accessor functions to get or set the list of JobManager objects for the remote site.
JOBMANAGER_RESOURCE - Static variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest: The type identifying that the resource to authenticate against is a job manager.
JOBMANAGER_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the jobmanager type.
JOBMANAGER_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the key that specifies the jobmanager type.
JOBMANAGER_UNIVERSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints: The jobmanager universe key.
JOBMANAGERINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: Array storing the names of the attributes that are stored with the jobmanager.
JobMeasurements - Class in edu.isi.pegasus.planner.visualize: A data class that associates at most three measurements with the job corresponding to the GRIDSTART_PREJOB, GRIDSTART_MAINJOB and GRIDSTART_POSTJOB.
JobMeasurements() - Constructor for class edu.isi.pegasus.planner.visualize.JobMeasurements: The default constructor.
JobMeasurements(String) - Constructor for class edu.isi.pegasus.planner.visualize.JobMeasurements: The overloaded constructor.
jobName - Variable in class edu.isi.pegasus.planner.classes.Job: The name of the job.
JOBS_IN_QUEUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the number of the jobs in the queue attribute.
JobSpace - Class in edu.isi.pegasus.planner.visualize.spaceusage: A data class that associates at most three space reading with the job corresponding to the GRIDSTART_PREJOB, GRIDSTART_MAINJOB and GRIDSTART_POSTJOB.
JobSpace() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The default constructor.
JobSpace(String) - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The overloaded constructor.
JOBSTATE_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell: The prefix for events associated with job in jobstate.log file
JOBSTATE_LOG - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The name of the tailstatd file.
JOBSTATE_LOG - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The name of the tailstatd file.
JOBSTATE_POST_SCRIPT_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell: The prefix for events associated with POST_SCRIPT in jobstate.log file
JOBSTATE_PRE_SCRIPT_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell: The prefix for events associated with job in jobstate.log file
JobStatus - Class in edu.isi.pegasus.planner.invocation: This abstract class is the interface for all classes that describe the job exit, which describes more clearly failure, regular execution, signal and suspension.
JobStatus() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatus
JobStatusFailure - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
JobStatusFailure() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure: Default c'tor: Construct a hollow shell and allow further information to be added later.
JobStatusFailure(int) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure: Constructs an error number without reason text.
JobStatusFailure(int, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure: Constructs a piece of data.
JobStatusRegular - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
JobStatusRegular() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusRegular: Default c'tor: Construct a hollow shell and allow further information to be added later.
JobStatusRegular(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusRegular: Constructs an exit code.
JobStatusSignal - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
JobStatusSignal() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal: Default c'tor: Construct a hollow shell and allow further information to be added later.
JobStatusSignal(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal: Constructs an error number without reason text.
JobStatusSignal(short, boolean) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal: Constructs a piece of data.
JobStatusSignal(short, boolean, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal: Constructs a piece of data.
JobStatusSuspend - Class in edu.isi.pegasus.planner.invocation: This class is transient for XML parsing.
JobStatusSuspend() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Default c'tor: Construct a hollow shell and allow further information to be added later.
JobStatusSuspend(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Constructs an error number without reason text.
JobStatusSuspend(short, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend: Constructs a piece of data.
jobType2GridGatewayJobType(int) - Static method in class edu.isi.pegasus.planner.classes.Job: Returns an appropriate grid gateway job type corresponding to a job type
joinLFN(String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: Joins the 3 components into a fully qualified logical mName of the format NS::NAME:VER

K

KEEP_ALWAYS - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The state denoting always to keep the temporary files.
KEEP_NEVER - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The state denoting never to keep the temporary files.
KEEP_ONERROR - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The state denoting to keep the temporary files only in case of error.
KEEP_TMP_FILE_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The name of the key that determines whether we keep the tmp xml file around or not.
keySet() - Method in class edu.isi.pegasus.planner.namespace.Namespace: Returns the key set associated with the namespace.
Kickstart - Class in edu.isi.pegasus.planner.code.gridstart: This enables a constituentJob to be run on the grid, by launching it through kickstart.
Kickstart() - Constructor for class edu.isi.pegasus.planner.code.gridstart.Kickstart
KICKSTART_CLEANUP - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The environment variable used to the set Kickstart CLEANUP JOB.
KICKSTART_INDEX - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory: The index in the constant arrays for NoGridStart.
KICKSTART_INPUT_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The suffix for the kickstart input file, that is generated to use invoke at the remote end.
KICKSTART_POSTJOB - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The environment variable used to the set Kickstart POSTJOB.
KICKSTART_PREJOB - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The environment variable used to the set Kickstart PREJOB.
KICKSTART_SETUP - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The environment variable used to the set Kickstart SETUP JOB.
KickstartOutputFilenameFilter - Class in edu.isi.pegasus.planner.visualize.spaceusage: A filename filter for identifying the kickstart output files.
KickstartOutputFilenameFilter() - Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
KickstartParser - Class in edu.isi.pegasus.planner.visualize: A helper class that parses the kickstart records and has calls to callbacks for working on data sections of standard out, standard error, and standard input.
KickstartParser() - Constructor for class edu.isi.pegasus.planner.visualize.KickstartParser: The default constructor.

L

Label - Class in edu.isi.pegasus.planner.partitioner: This partitioner partitions the DAX into smaller partitions as specified by the labels associated with the jobs.
Label(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Label: The overloaded constructor.
LABEL_BASED_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: The name of the class that does label based partitioning.
LABEL_CALLBACK_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory: The default callback for label partitioning.
LABEL_CLUSTERING_TYPE - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory: The type corresponding to label based clustering.
LABEL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the profile key in vds namespace that does the labelling by default.
LABEL_KEY - Static variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: The default key that is associated with label.
LabelBag - Class in edu.isi.pegasus.planner.partitioner.graph: A bag implementation that just holds a particular value for the label key.
LabelBag() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.LabelBag: The default constructor.
labelBasedSubmitDirectoryForSubWorkflows() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns a boolean indicating whether the submit directory for the sub workflows should include the label of the sub workflow or not.
Last_Test_Date - Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
lastAddedNode() - Method in class edu.isi.pegasus.planner.partitioner.Partition: Returns the last added node to the partition.
lb - Variable in class edu.isi.pegasus.planner.provisioner.Node
level - Variable in class edu.isi.pegasus.planner.classes.Job: Identifies the level of the job in the dax.
LEVEL_BASED_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: The name of the class that does level based partitioning.
LEVEL_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
lfn - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
lfn - Variable in class edu.isi.pegasus.planner.client.TCClient
LFN_DOES_NOT_EXIST_MSG - Static variable in class edu.isi.pegasus.planner.client.RCClient: The message for LFN's not found.
lfnDoesNotExist(String) - Method in class edu.isi.pegasus.planner.client.RCClient: Writes out a message about LFN not existing.
lfnMap - Variable in class edu.isi.pegasus.planner.classes.DagInfo: Contains a unique ordered listing of the logical names referred to by the dag.
LIGO_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The name of the LIGO VO
LINUX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
list(PrintStream) - Method in class edu.isi.pegasus.common.util.CommonProperties: Print out the property list onto the specified stream.
list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Lists all logical filenames in the catalog.
list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Lists a subset of all logical filenames in the catalog.
list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Lists a subset of all logical filenames in the catalog.
list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Lists all logical filenames in the catalog.
list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Lists all logical filenames in the catalog.
list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Lists a subset of all logical filenames in the catalog.
list() - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Lists all logical filenames in the catalog.
list(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Lists a subset of all logical filenames in the catalog.
list() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns the list of sites, in the store.
list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Lists the site handles for all the sites in the Site Catalog.
list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Lists the site handles for all the sites in the Site Catalog.
list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Lists the site handles for all the sites in the Site Catalog.
list() - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog: Lists the site handles for all the sites in the Site Catalog.
listIterateJob() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Enumerates the internal values that constitute the content of the job list.
listIterateStatCall() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord: Accessor: Enumerates the internal values that constitute the content of the stat list.
load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Loads up the Site Catalog implementation with the sites whose site handles are specified.
load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: Loads up the Site Catalog implementation with the sites whose site handles are specified.
load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Loads up the Site Catalog implementation with the sites whose site handles are specified.
load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Loads up the Site Catalog implementation with the sites whose site handles are specified.
load(List<String>) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog: Loads up the Site Catalog implementation with the sites whose site handles are specified.
Load - Class in edu.isi.pegasus.planner.invocation: The RAM element.
Load() - Constructor for class edu.isi.pegasus.planner.invocation.Load: The default constructor
loadCacheFiles(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Ends up loading the cache files so as to enable the lookup for the transient files created by the parent jobs.
loadCleanupImplementationInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory: Loads the implementing class corresponding to the mode specified by the user at runtime.
loadCleanupStraegyInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory: Loads the implementing class corresponding to the mode specified by the user at runtime.
loadClusterer(ADag, PegasusBag, String) - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory: Loads the appropriate clusterer on the basis of the clustering type specified in the options passed to the planner.
loadConfigurationProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration: Loads configuration specific properties into PegasusProperties
loadConfigurationPropertiesAndOptions(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration: Loads configuration specific properties into PegasusProperties, and adjusts planner options accordingly.
loadCreateDirectoryImplementationInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.CreateDirectory: Loads the implementing class corresponding to the mode specified by the user at runtime.
loadCreateDirectoryStraegyInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.CreateDirectory: Loads the implementing class corresponding to the mode specified by the user at runtime.
loadDAXParser(PegasusBag, String, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Loads the appropriate DAXParser looking at the dax schema that is specified by the user.
loadDAXParser(PegasusBag, Callback, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Loads the appropriate DAXParser looking at the dax schema that is specified in the DAX file.
loadDAXParser(String, PegasusBag, Callback) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Loads the appropriate DAXParser looking at the dax schema that is specified by the user.
loadDAXParserCallback(String, PegasusProperties, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Loads the implementing class corresponding to the type specified by the user.
loadDAXParserCallback(PegasusProperties, String, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory: Loads the implementing class corresponding to the type specified by the user.
loadDeployWorkerPackage(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Loads the implementing class corresponding to the mode specified by the user at runtime.
loadEnvironmentVariables() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Initializes the internal hash that collects environment variables.
loadGridStart(Job, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Loads the appropriate gridstart implementation for a job on the basis of the value of the GRIDSTART_KEY in the Pegasus namepsace.
loadGridStart(PegasusBag, ADag, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Loads the implementing class corresponding to the class.
loadImplementations(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner: Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
loadImplementations(PegasusBag) - Method in interface edu.isi.pegasus.planner.transfer.Refiner: Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
loadImplementations(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.SingleFTPerXFERJobRefiner: Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
loadInheritedReplicaStore(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Ends up loading the inherited replica files.
loadInstance(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: This method loads the appropriate implementing CondorStyle as specified by the user at runtime.
loadInstance(PegasusBag, String) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: This method loads the appropriate CredentialHandler using reflection.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory: Loads the appropriate LogFormatter class as specified by properties.
loadInstance(String) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory: Loads the Log Formatter specified.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory: Loads the appropriate LogManager class as specified by properties.
loadInstance(String, String, Properties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory: Loads the Log Formatter specified.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory: Connects the interface with the replica catalog implementation.
loadInstance(CommonProperties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory: Connects the interface with the replica catalog implementation.
loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory: Connects the interface with the replica catalog implementation.
loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory: Connects the interface with the replica catalog implementation.
loadInstance(PegasusProperties, boolean) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory: Connects the interface with the site catalog implementation.
loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory: Connects the interface with the transformation catalog implementation.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory: Connects the interface with the site catalog implementation.
loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory: Connects the interface with the site catalog implementation.
loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode: The overloaded method which is to be used internally in Pegasus.
loadInstance(String, Object[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode: Loads the appropriate TC implementing Class with the given arguments.
loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: Connects the interface with the transformation catalog implementation.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: Connects the interface with the transformation catalog implementation.
loadInstance(PegasusProperties, LogManager) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: Connects the interface with the transformation catalog implementation.
loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory: Connects the interface with the transformation catalog implementation.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory: Connects the interface with the work catalog implementation.
loadInstance(CommonProperties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory: Connects the interface with the work catalog implementation.
loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory: Connects the interface with the work catalog implementation.
loadInstance(ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory: Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
loadInstance(String, ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory: Loads the implementing class corresponding to the class passed.
loadInstance(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: Returns the appropriate handle to the JobAggregator that is to be used for a particular type of job.
loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.code.CodeGeneratorFactory: This method loads the appropriate implementing code generator as specified by the user at runtime.
loadInstance(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.code.CodeGeneratorFactory: This method loads the appropriate code generator as specified by the user at runtime.
loadInstance(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: This method loads the appropriate implementing CondorStyle as specified by the user at runtime.
loadInstance(PegasusBag, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: This method loads the appropriate Condor Style using reflection.
loadInstance(PegasusProperties, PlannerOptions, String) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory: Loads the implementing class corresponding to the type specified by the user.
loadInstance(PegasusProperties, PlannerOptions, String, String) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory: Loads the implementing class corresponding to the type specified by the user.
loadInstance(PegasusProperties, String, String) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter: The ends up loading the PDAXWriter.
loadInstance(String, PegasusProperties, String, String) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter: Loads the implementing PDAXWriter.
loadInstance(PegasusProperties, GraphNode, Map, String) - Static method in class edu.isi.pegasus.planner.partitioner.PartitionerFactory: Loads the implementing class corresponding to the type specified by the user.
loadInstance() - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory: A no hassle factory method that loads the replica selector specified in the properties.
loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory: Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
loadInstance(PegasusProperties, String) - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory: Loads the implementing class corresponding to the class.
loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory: Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
loadInstance(PegasusBag, int) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory: Loads the implementing class corresponding to the type specified by the user.
loadInstance(String, PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory: Loads the implementing class corresponding to the class.
loadInstance(ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory: Loads the implementing class corresponding to the value specified in the properties.
loadInstance(String, PegasusBag, ADag) - Static method in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory: Loads the implementing class corresponding to the class.
loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.sls.SLSFactory: This method loads the appropriate implementing code generator as specified by the user at runtime.
loadInstance(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.transfer.sls.SLSFactory: This method loads the appropriate code generator as specified by the user at runtime.
loadLocalEnvVariables() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: Reads in the environment variables into memory from the properties file and the pool catalog.
loadNonSingletonObjects(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It loads the objects using their non singleton implementations.
loadPartitioner(PegasusProperties, String, GraphNode, Map) - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory: Loads the appropriate partitioner on the basis of the clustering type specified in the options passed to the planner.
loadPoolInstance(String, String, int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Loads the pool info provider class using the reflection package in java at runtime.
loadPoolInstance(String, String, String, int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Loads the pool info provider class using the reflection package in java at runtime.
loadPoolInstance(String, int, Object[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Loads the appropriate class that implements a particular pool mode using the reflection package in java at runtime.
loadPOSTScript(Job, GridStart) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Loads the appropriate POST Script implementation for a job on the basis of the value of the Pegasus profile GRIDSTART_KEY, and the DAGMan profile POST_SCRIPT_KEY in the Pegasus namepsace.
loadPOSTScript(PegasusProperties, String, String, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory: Loads the implementing class corresponding to the class.
loadPPS(PegasusProperties) - Static method in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory: Loads the appropriate PPS implementation on the basis of the property set in the properties.
loadProperties() - Method in class edu.isi.pegasus.planner.client.CPlanner: Loads all the properties that are needed by this class.
loadProperties() - Method in class edu.isi.pegasus.planner.client.Executable: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.client.PartitionDAX: Loads all the properties that are needed by this class.
loadProperties() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites: An empty implementation.
loadProperties() - Method in class edu.isi.pegasus.planner.client.PlotNodeUsage: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.client.RankDAX: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.client.SCClient: Loads all the properties that would be needed by the Toolkit classes
loadProperties() - Method in class edu.isi.pegasus.planner.client.TCClient
loadProperties() - Method in class edu.isi.pegasus.planner.client.TCConverter: Loads all the properties that would be needed by the Toolkit classes
loadProperties() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Loads all the properties that would be needed by the Toolkit classes.
loadProperties() - Method in class edu.isi.pegasus.planner.refiner.Engine: Loads all the properties that are needed by the Engine classes.
loadSingletonInstance(String) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory: Loads the appropriate LogFormatter class as specified by properties.
loadSingletonInstance() - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory: Loads the appropriate LogManager class as specified by properties.
loadSingletonInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory: Loads the appropriate LogManager class as specified by properties.
loadSingletonObjects() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: It loads the objects that the pool providers need in a singleton manner, wherever possible.
loadSite(AbstractSiteCatalogResource) - Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: Whether to laod a site or not in the SiteStore
loadSite(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser: Whether to laod a site or not in the SiteStore
loadSiteStore(Collection<String>, PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory
loadSiteStore(Set<String>) - Method in class edu.isi.pegasus.planner.client.CPlanner: Loads the sites from the site catalog into the site store
loadTCMapper(String, PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
loadTXSelector(String) - Static method in class edu.isi.pegasus.planner.selector.TransformationSelector: Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
loadXMLProducer(PegasusProperties) - Static method in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory: Loads the appropriate XMLProducer on the basis of the property set in the properties.
Local - Class in edu.isi.pegasus.planner.selector.replica: This replica selector only prefers replicas from the local host and that start with a file: URL scheme.
Local(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Local: The overloaded constructor, that is called by load method.
LOCAL_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner: The prefix for all local transfer jobs.
LOCAL_SITE_HANDLE - Static variable in interface edu.isi.pegasus.planner.selector.ReplicaSelector: The local site handle.
LOCAL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
LOCAL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor: The condor universe key value for local universe.
LocalDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes: This data class represents a local directory on a site.
LocalDirectory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory: The default constructor.
LocalDirectory(List<FileServer>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory: The overloaded constructor
LocalSiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes: A convenience class that creates a default local site catalog entry
LocalSiteCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.LocalSiteCatalogEntry
log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.logger.Default: Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
log(String, int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default: Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
log(int) - Method in class edu.isi.pegasus.common.logging.LogManager: Log the message represented by the internal log buffer.
log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.LogManager: Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
log(String, int) - Method in class edu.isi.pegasus.common.logging.LogManager: Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
log(String, int) - Method in class edu.isi.pegasus.planner.client.Executable: Logs messages to the singleton logger.
log(String, int) - Method in class edu.isi.pegasus.planner.client.NetloggerExitcode: Logs messages to the logger.
log(Level, String) - Static method in class edu.isi.pegasus.planner.client.RCClient: Logs messages from main() method.
log(Level, String) - Method in class edu.isi.pegasus.planner.invocation.SimpleServerThread
log(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: Small helper method to bundle repetitive parameters in a template for reporting progress.
log(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
Log4j - Class in edu.isi.pegasus.common.logging.logger: A Log4j implementation of the LogManager interface.
Log4j() - Constructor for class edu.isi.pegasus.common.logging.logger.Log4j: The constructor.
LOG4J_CONF_PROPERTY - Static variable in class edu.isi.pegasus.common.logging.logger.Log4j: The property that specifies the path to the log4j properties file.
LOG4J_CONF_PROPERTY - Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The LOG4j system configuration property.
LOG4J_LOGGER - Static variable in class edu.isi.pegasus.common.logging.LogManager: The Log4j logger.
logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.logger.Default: Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.LogManager: A stop gap function .
logAndReset(int) - Method in class edu.isi.pegasus.common.logging.LogManager: Creates a log message with the contents of the internal log buffer.
logConfigMessages() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner: Logs configuration messages regarding the type of implementations loaded for various type of transfer node creations.
logDeprecatedWarning(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Logs a warning about the deprecated property.
logEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Log a message that connects the parent entities with the children.
logEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.LogManager: Log a message that connects the parent entities with the children.
logEntityHierarchyMessage(String, String, String, Collection<String>, int) - Method in class edu.isi.pegasus.common.logging.LogManager: Log a message that connects the parent entities with the children.
LogEvent - Class in edu.isi.ikcap.workflows.util.logging
LogEvent(String, String, String, String) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
LogEvent(String, String, Map<String, String>) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
LogEvent(String, String) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.logger.Default: Logs the completion message on the basis of the debug level.
logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j: Logs the completion message on the basis of the debug level.
logEventCompletion() - Method in class edu.isi.pegasus.common.logging.LogManager: Logs the completion message on the basis of the debug level.
logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.LogManager: Logs the completion message on the basis of the debug level.
logEventStart(String, String, String) - Method in class edu.isi.pegasus.common.logging.LogManager: Log an event start message to INFO level
logEventStart(String, String, String, int) - Method in class edu.isi.pegasus.common.logging.LogManager: Log an event start message.
logEventStart(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.LogManager: Log an event start message to the INFO Level
logEventStart(String, Map<String, String>, int) - Method in class edu.isi.pegasus.common.logging.LogManager: Log an event start message.
logFile(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Returns the name of the log file to used on the remote site, for the seqexec job.
LogFormatter - Interface in edu.isi.pegasus.common.logging: The interface that defines how the messages need to be formatted for logging
LogFormatterFactory - Class in edu.isi.pegasus.common.logging: A factory class to load the appropriate implementation of LogFormatter as specified by properties.
LogFormatterFactory() - Constructor for class edu.isi.pegasus.common.logging.LogFormatterFactory
LogFormatterFactoryException - Exception in edu.isi.pegasus.common.logging: Class to notify of failures while instantiating Log Formatter implementations.
LogFormatterFactoryException(String) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException: Constructs a LogFormatterFactoryException with no detail message.
LogFormatterFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException: Constructs a LogFormatterFactoryException with the specified detailed message.
LogFormatterFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException: Constructs a LogFormatterFactoryException with the specified detailed message and a cause.
LogFormatterFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException: Constructs a LogFormatterFactoryException with the specified detailed message and a cause.
logger - Static variable in class edu.isi.pegasus.common.logging.logger.Default: Ensures only one object is created always.
LoggingKeys - Interface in edu.isi.ikcap.workflows.util.logging: Defines keys for creating logs within the workflow system
LoggingKeys - Class in edu.isi.pegasus.common.logging: Some predifined logging keys to be used for logging.
LoggingKeys() - Constructor for class edu.isi.pegasus.common.logging.LoggingKeys
logicalId - Variable in class edu.isi.pegasus.planner.classes.Job: The logical id of the job as referred to in the dax.
logicalName - Variable in class edu.isi.pegasus.planner.classes.Job: The logical name of the transformation which is executed as a part of this job.
logIDHierarchyMessage(ADag, String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner: Logs a message that connects the jobs with DAX/DAG
logJobAggregatorProgress() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns whether the seqexec job aggregator should log progress to a log or not.
logJobAggregatorProgressToGlobal() - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Returns whether the seqexec job aggregator should write to a global log or not.
LogManager - Class in edu.isi.pegasus.common.logging: The logging class that to log messages at different levels.
LogManager() - Constructor for class edu.isi.pegasus.common.logging.LogManager: The constructor.
LogManagerFactory - Class in edu.isi.pegasus.common.logging: A factory class to load the appropriate implementation of Logger API as specified by properties.
LogManagerFactory() - Constructor for class edu.isi.pegasus.common.logging.LogManagerFactory
LogManagerFactoryException - Exception in edu.isi.pegasus.common.logging: Class to notify of failures while instantiating Log Factory implementations.
LogManagerFactoryException(String) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException: Constructs a LogManagerFactoryException with no detail message.
LogManagerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException: Constructs a LogManagerFactoryException with the specified detailed message.
LogManagerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException: Constructs a LogManagerFactoryException with the specified detailed message and a cause.
LogManagerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException: Constructs a LogManagerFactoryException with the specified detailed message and a cause.
logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Logs the message to a logging stream.
logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Logs the message to a logging stream.
logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Logs the message to a logging stream.
logRefinerAction(AggregatedJob, JobAggregator) - Method in class edu.isi.pegasus.planner.cluster.Horizontal: Records the refiner action into the Provenace Store as a XML fragment.
logRefinerAction(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Logs the action taken by the refiner on a job as a XML fragment in the XML Producer.
logRefinerAction(Job, Job, Collection, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Default: Records the refiner action into the Provenace Store as a XML fragment.
logSuccessfulCompletion(boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner: Logs the successful completion message.
lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves the entry for a given filename and site handle from the replica catalog.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves all entries for a given LFN from the replica catalog.
lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves the entry for a given filename and resource handle from the replica catalog.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves all entries for a given LFN from the replica catalog.
lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves the entry for a given filename and site handle from the replica catalog.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves all entries for a given LFN from the replica catalog.
lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves the entry for a given filename and resource handle from the replica catalog.
lookup(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves all entries for a given LFN from the replica catalog.
lookup(Set) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Set, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(Map) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: Returns SiteCatalogEntry matching a site handle.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: Retrieves the SiteCatalogEntry for a site.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML: Retrieves the SiteCatalogEntry for a site.
lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Retrieves the SiteCatalogEntry for a site.
lookup(String) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog: Retrieves the SiteCatalogEntry for a site.
lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
lookup(String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
lookup(String, String, String, List, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
lookupConfProperty(String[], char) - Method in class edu.isi.pegasus.planner.client.Executable: Looks up for the conf property in the arguments passed to the executable
lookupConfProperty(String[], char) - Method in class edu.isi.pegasus.planner.client.RCClient: Looks up for the conf property in the command line arguments passed to the RCClient
lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Get the list of Profiles associated with a particular logical transformation.
lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Get the list of Profiles associated with a particular logical transformation.
lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Get the list of Profiles associated with a particular logical transformation.
lookupLFNProfiles(String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Get the list of Profiles associated with a particular logical transformation.
lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves all entries for a given LFN from the replica catalog.
lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves all entries for a given LFN from the replica catalog.
lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves all entries for a given LFN from the replica catalog.
lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves all entries for a given LFN from the replica catalog.
lookupNoAttributes(Set) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoAttributes(Set, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog: Retrieves multiple entries for a given logical filename, up to the complete catalog.
lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
lookupNoProfiles(String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Get the list of Profiles associated with a particular physical transformation.
lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Get the list of Profiles associated with a particular physical transformation.
lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Get the list of Profiles associated with a particular physical transformation.
lookupPFNProfiles(String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Get the list of Profiles associated with a particular physical transformation.
lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Get the list of Resource ID's where a particular transformation may reside.
lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Get the list of Resource ID's where a particular transformation may reside.
lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Get the list of Resource ID's where a particular transformation may reside.
lookupSites(String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Get the list of Resource ID's where a particular transformation may reside.
LOWEST_RANK_VALUE - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex: The lowest rank value
LRC - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes: This is a data class that is used to store information about a local replica catalog, that is associated with a site in the pool configuration catalog.
LRC(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC: Constructor for the class.
LRC - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The constant to be passed to the accessor functions to get or set the list of LRC objects for the remote site.
LRC - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: token value for the reserved word "lrc".

M

m_application - Variable in class edu.isi.pegasus.planner.client.VersionNumber: application's own name.
m_archmode - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Describes the architecture runtime mode.
m_arguments - Variable in class edu.isi.pegasus.planner.invocation.Job: Command-line arguments.
m_argv - Variable in class edu.isi.pegasus.planner.invocation.ArgVector: This is the (new) alternative explicit argument vector.
m_atime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Contains the last access time timestamp.
m_attributeMap - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Any optional attributes associated with the PFN.
m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Remembers if obtaining generated keys will work or not.
m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.work.Database: Remembers if obtaining generated keys will work or not.
m_batch - Variable in class edu.isi.pegasus.planner.client.RCClient: Indication of batch mode.
m_binDir - Variable in class edu.isi.pegasus.common.util.CommonProperties: The bin dir of the Pegasus install
m_blksize - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Stores the blocksize of the file.
m_blocks - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Stores the number of blocks of the file.
m_chunk_factor - Variable in class edu.isi.pegasus.planner.client.RCClient: The number of lines that are to be parsed for chunking up large input files.
m_classname - Variable in class edu.isi.pegasus.common.util.DynamicLoader: Stores the fully qualified class name to dynamically instantiate.
m_coarse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Parsing for ISO dates without milliseconds
m_conf_property_file - Variable in class edu.isi.pegasus.planner.client.RCClient: Reference to the property file passed using the --conf option
m_core - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal: This flag signals, if a core file was generated.
m_count - Variable in class edu.isi.pegasus.planner.invocation.Fifo: optional message count for the FIFO.
m_ctime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Contains the creation time timestamp.
m_cwd - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Working directory at startup.
m_data - Variable in class edu.isi.pegasus.planner.invocation.StatCall: Optional data gleaned from stdout or stderr.
m_dbschema - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
m_depth - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Count the depths of elements in the document
m_derivation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Name of the Derivation that produced this invocation.
m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Descriptor: Descriptor of the file.
m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Temporary: Descriptor of the file.
m_domainname - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Contains the optional domain name on the network.
m_duration - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: total duration of call.
m_duration - Variable in class edu.isi.pegasus.planner.invocation.Job: Duration of the job.
m_emptyFail - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
m_environment - Variable in class edu.isi.pegasus.planner.invocation.Environment: Mappings of keys to values
m_environment - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Environment settings.
m_errno - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure: This is the errno value with the reason that the invocation of the application failed.
m_errno - Variable in class edu.isi.pegasus.planner.invocation.StatCall: value of errno after calling any stat function, or -1 for failure.
m_errors - Variable in class edu.isi.pegasus.planner.client.DAXValidator: Counts the number of errors.
m_escapable - Variable in class edu.isi.ikcap.workflows.util.logging.Escape: Defines the set of characters that require escaping.
m_escapable - Variable in class edu.isi.pegasus.common.util.Escape: Defines the set of characters that require escaping.
m_escape - Variable in class edu.isi.ikcap.workflows.util.logging.Escape: Defines the character used to escape characters.
m_escape - Variable in class edu.isi.pegasus.common.util.Escape: Defines the character used to escape characters.
m_executable - Variable in class edu.isi.pegasus.planner.invocation.Arguments: This is the executable that was run.
m_executable - Variable in class edu.isi.pegasus.planner.invocation.CommandLine: This is the executable that was run.
m_executable - Variable in class edu.isi.pegasus.planner.invocation.Job: Stat call of the executable.
m_exitcode - Variable in class edu.isi.pegasus.planner.invocation.JobStatusRegular: This is exit code returned by the application.
m_fatals - Variable in class edu.isi.pegasus.planner.client.DAXValidator: Counts the number of fatal errors.
m_file - Variable in class edu.isi.pegasus.planner.invocation.StatCall: the object (fn,fd) that the stat call was taken on.
m_filename - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Records the name of the on-disk representation.
m_filename - Variable in class edu.isi.pegasus.planner.invocation.Regular: Name of the file.
m_filename - Variable in class edu.isi.pegasus.planner.invocation.Temporary: Name of the file.
m_fine - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Parsing for ISO dates with millisecond extension.
m_formatter - Variable in class edu.isi.pegasus.common.util.Currently: This is used to format the time stamp.
m_forward - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: A Hashmap to forward resolve namespaces that were encountered during parsing.
m_gid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: numerical group id of the effective user.
m_gid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: group id of the owner of the file.
m_group - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: symbolical group name of the effective user.
m_group - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: symbolical group name of the effective user.
m_handle - Variable in class edu.isi.pegasus.planner.invocation.StatCall: optional handle for stat calls of the invocation record
m_hexbyte - Variable in class edu.isi.pegasus.planner.invocation.File: optional first 16 byte of file, or less if shorter.
m_hostaddr - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: host address where gridlaunch ran (primary interface).
m_hostname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Symbolic hostname where gridlaunch ran (primary interface).
m_identifiers - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
m_idrss - Variable in class edu.isi.pegasus.planner.invocation.Usage: integral unshared data size, or private integral resident set size.
m_in - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner: Stores the stream from which we are currently scanning.
m_inblock - Variable in class edu.isi.pegasus.planner.invocation.Usage: block input operations.
m_info - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific: The List of MachineInfo elements associated with the machine.
m_inode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: We store the inode number, which let's us reference a file uniquely per filesystem.
m_instance - Static variable in class edu.isi.pegasus.common.util.CommonProperties: implements the singleton access via class variable.
m_interface - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Symbolic name of primary interface we used to determine host-name and -address.
m_isrss - Variable in class edu.isi.pegasus.planner.invocation.Usage: integral stoack size.
m_ixrss - Variable in class edu.isi.pegasus.planner.invocation.Usage: integral shared memory size.
m_job - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Job records: prejob, main job, postjob
m_jobStatus - Variable in class edu.isi.pegasus.planner.invocation.Status: This member variable contains the real status of the job.
m_key - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
m_key - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry: environment handle
m_key - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
m_lfn - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Maintains a memory slurp of the file representation.
m_lfn - Variable in class edu.isi.pegasus.planner.invocation.StatCall: optional logical filename associated with this stat call
m_lineno - Variable in exception edu.isi.pegasus.planner.parser.ScannerException
m_location - Variable in class edu.isi.pegasus.planner.client.DAXValidator: Keep the location within the document.
m_location - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Keep the location within the document
m_log - Variable in class edu.isi.pegasus.planner.client.RCClient: Our own logger.
m_log - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Obtain our logger once for multiple uses.
m_logger - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser: The handle to the logger used to log messages.
m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser: Stores the look-ahead symbol.
m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner: Captures the look-ahead character.
m_machine - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Contains the machine's hardware description.
m_machine - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: The Machine object capturing machine information.
m_majflt - Variable in class edu.isi.pegasus.planner.invocation.Usage: major page faults - incurred subsystem IO, sometimes includes swap.
m_maxrss - Variable in class edu.isi.pegasus.planner.invocation.Usage: maximum resident set size.
m_minflt - Variable in class edu.isi.pegasus.planner.invocation.Usage: minor page faults - sometimes also recovered pages.
m_mode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Is the number for the file mode.
m_msgrcv - Variable in class edu.isi.pegasus.planner.invocation.Usage: messages received.
m_msgsnd - Variable in class edu.isi.pegasus.planner.invocation.Usage: messages sent.
m_mtime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Contains the last modification time timestamp;
m_name - Variable in class edu.isi.pegasus.planner.parser.IVSElement
m_namespace - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
m_namespace - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
m_next_exception - Variable in exception edu.isi.pegasus.planner.catalog.CatalogException: chains the next exception into line.
m_nivcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage: involuntary conext switches.
m_nlink - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Stores the number of hard links to the file.
m_noDBase - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
m_nodename - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Describes the machine's network node hostname.
m_nsignals - Variable in class edu.isi.pegasus.planner.invocation.Usage: number of signals sent to process.
m_nswap - Variable in class edu.isi.pegasus.planner.invocation.Usage: number of swap operations - unused in Linux unless kernel patched.
m_nvcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage: voluntary context switches.
m_obj - Variable in class edu.isi.pegasus.planner.parser.IVSElement
m_outblock - Variable in class edu.isi.pegasus.planner.invocation.Usage: block output operations.
m_pagesize - Variable in class edu.isi.pegasus.planner.invocation.Machine: The only attribute to the machine element is required.
m_parser - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
m_parser - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Holds the instance of a XMLReader class.
m_pconfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
m_pconfig - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
m_pegasus_props - Variable in class edu.isi.pegasus.planner.client.RCClient: The object holding all the properties pertaining to Pegasus.
m_pfn - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: The physical filename.
m_pid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: process id of gridlaunch itself.
m_pid - Variable in class edu.isi.pegasus.planner.invocation.Job: Process id assigned to the job.
m_pmem - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Records the physical memory on the remote machine, if available.
m_pool_info - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
m_pool_info - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
m_position - Variable in exception edu.isi.pegasus.common.util.ProfileParserException: Remembers the position that cause the exception to be thrown.
m_position - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry: argument vector position
m_prefs - Variable in class edu.isi.pegasus.planner.client.RCClient: Maintains instance-local settings on user preferences.
m_props - Variable in class edu.isi.pegasus.common.util.CommonProperties: internal set of properties.
m_quote - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Records the quoting mode for LFNs and PFNs.
m_rc - Variable in class edu.isi.pegasus.planner.client.RCClient: Maintains the interface to the replica catalog implementation.
m_reader - Variable in class edu.isi.pegasus.planner.client.DAXValidator: Holds the instance of a XMLReader class.
m_readonly - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: A boolean indicating whether the catalog is read only or not.
m_release - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Contains the operating system's version string.
m_remote - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
m_resource - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Resource, site or pool at which the jobs was run.
m_result - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: Holds the result, will be overwritten by each invocation of parse().
m_reverse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: A Hashmap to reverse resolve namespaces that were encountered during parsing.
m_rls_logger - Variable in class edu.isi.pegasus.planner.client.RCClient: Logger for RLS implementation for the time being.
m_root - Static variable in class edu.isi.pegasus.planner.client.RCClient: Keeps track of log4j's root logger as singleton.
m_rsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo: optional number of bytes read from FIFO.
m_scanner - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser: The access to the lexical scanner is stored here.
m_schemaDir - Variable in class edu.isi.pegasus.common.util.CommonProperties: Location of our schemas
m_schemafile - Variable in class edu.isi.pegasus.planner.client.DAXValidator: what is the name of the schema file in the filename hint?
m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
m_sharedStateDir - Variable in class edu.isi.pegasus.common.util.CommonProperties: GNU: modifiable architecture-independent data in DIR [PREFIX/share/pegasus].
m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal: This is the signal number that led to the process termination.
m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend: This is the signal number that led to the suspension.
m_size - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: Denotes the size of the file.
m_socket - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
m_specific - Variable in class edu.isi.pegasus.planner.invocation.Machine: This is a grouping element for the remaining machine-specific items.
m_stack - Variable in class edu.isi.pegasus.planner.parser.InvocationParser: A stack of namespaces?
m_stamp - Variable in class edu.isi.pegasus.planner.invocation.Machine: The time when the snapshot was taken.
m_start - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: start of gridlaunch timestamp.
m_start - Variable in class edu.isi.pegasus.planner.invocation.Job: Start time of this job.
m_stat - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Array with stat() and fstat() information about various files.
m_statinfo - Variable in class edu.isi.pegasus.planner.invocation.StatCall: the stat information itself, only present for unfailed calls.
m_status - Variable in class edu.isi.pegasus.planner.invocation.Job: Exit condition of the job.
m_status - Variable in class edu.isi.pegasus.planner.invocation.Status: The raw exit code, unparsed and unprepared.
m_stime - Variable in class edu.isi.pegasus.planner.invocation.Usage: system time - time spent in system mode, seconds with fraction.
m_symbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: Singleton implementation of a symbol table for reserved words.
m_sysConfDir - Variable in class edu.isi.pegasus.common.util.CommonProperties: GNU: read-only single-machine data in DIR [PREFIX/etc].
m_sysname - Variable in class edu.isi.pegasus.planner.invocation.Architecture: Describes the operating system name.
m_tag - Variable in class edu.isi.pegasus.planner.invocation.Job: This is the tag to produce the job for.
m_tag - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific: This is the tag to group the machine-specific information.
m_total_lines_succ_worked - Variable in class edu.isi.pegasus.planner.client.RCClient: The total number of lines on which the client has successfully worked on till yet.
m_total_lines_worked - Variable in class edu.isi.pegasus.planner.client.RCClient: The total number of lines on which the client has worked on till yet.
m_transformation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Name of the: Transformation that produced this invocation.
m_truncated - Variable in class edu.isi.pegasus.planner.invocation.Data: Indicates, if the data is only partial.
m_uid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: numerical user id of the effective user.
m_uid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: user id of the owner of the file.
m_umask - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Currently active umask while kickstart was executing.
m_uname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Architectural information.
m_uname - Variable in class edu.isi.pegasus.planner.invocation.Machine: The uname child element is mandatory.
m_usage - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Total resource consumption by gridlaunch and all siblings.
m_usage - Variable in class edu.isi.pegasus.planner.invocation.Job: Resource usage of this job.
m_usage1 - Static variable in class edu.isi.pegasus.planner.client.ExitCode: Just a string to denote the short usage.
m_user - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: symbolical user name of the effective user.
m_user - Variable in class edu.isi.pegasus.planner.invocation.StatInfo: symbolical user name of the effective user.
m_utime - Variable in class edu.isi.pegasus.planner.invocation.Usage: user time - time spent in user mode, seconds with fraction.
m_value - Variable in class edu.isi.pegasus.planner.invocation.Architecture: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry: argument vector value
m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgString: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.CommandLine: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.Data: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry: environment value
m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal: This is the signal name or message contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.invocation.WorkingDir: This is the data contained between the tags.
m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.Identifier: This instance variable captures the token value for the reserved word.
m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.QuotedString: This instance variable captures the token value for the quoted string.
m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord: This instance variable captures the token value for the reserved word.
m_verbose - Variable in class edu.isi.pegasus.planner.client.DAXValidator: How verbose should we be?
m_version - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: protocol version information.
m_warnings - Variable in class edu.isi.pegasus.planner.client.DAXValidator: Counts the number of warnings.
m_wf_label - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Workflow label, currently optional?
m_wf_stamp - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord: Workflow timestamp to make the label more unique.
m_wsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo: optional number of bytes written - but not to the FIFO.
mAbstractChildID - Variable in class edu.isi.pegasus.planner.classes.PCRelation: The abstract id for the child node.
mAbstractDag - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The abstract DAG.
mAbstractGraph - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The map containing the a graph node for each of the jobs referred to in the dax.
mAbstractParentID - Variable in class edu.isi.pegasus.planner.classes.PCRelation: The abstract id for the parent node.
Machine - Class in edu.isi.pegasus.planner.invocation: The Machine element groups a time stamp, the page size, the generic utsname information, and a machine-specific content collecting element.
Machine() - Constructor for class edu.isi.pegasus.planner.invocation.Machine: Default constructor.
MACHINE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname: The release attribute for the uname
MACHINE_INFO_PREFIX - Static variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The prefix for machine information keys
MachineInfo - Class in edu.isi.pegasus.planner.invocation: An abstract class that is used for all the child elements that appear in the machine element.
MachineInfo() - Constructor for class edu.isi.pegasus.planner.invocation.MachineInfo: Default constructor.
MachineSpecific - Class in edu.isi.pegasus.planner.invocation: This class collects the various OS-specific elements that we are capturing machine information for.
MachineSpecific(String) - Constructor for class edu.isi.pegasus.planner.invocation.MachineSpecific: Default constructor.
mAddJobsDeleted - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the jobs which are deleted due to the application of the Reduction algorithm.
mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: A boolean indicating whether chmod jobs should be created that set the xbit in case of executable staging.
mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: A boolean indicating whether chmod jobs should be created that set the xbit in case of executable staging.
mAdjFName - Variable in class edu.isi.pegasus.planner.parser.Parser: Boolean flag to ensure that two adjacent filenames are separated by a whitespace.
mAggregatorTable - Static variable in class edu.isi.pegasus.planner.namespace.Globus: The table that maps the various globus profile keys to their aggregator functions.
main(String[]) - Static method in class edu.isi.ikcap.workflows.util.logging.Escape: Test program.
main(String[]) - Static method in class edu.isi.pegasus.common.logging.TestLogFormatter
main(String[]) - Static method in class edu.isi.pegasus.common.util.CommonProperties
main(String[]) - Static method in class edu.isi.pegasus.common.util.CondorVersion: The main program to test.
main(String[]) - Static method in class edu.isi.pegasus.common.util.Escape: Test program.
main(String[]) - Static method in class edu.isi.pegasus.common.util.FindExecutable: Test function for the class
main(String[]) - Static method in class edu.isi.pegasus.common.util.ProfileParser: Test program.
main(String[]) - Static method in class edu.isi.pegasus.common.util.Separator2Test
main(String[]) - Static method in class edu.isi.pegasus.common.util.SeparatorTest
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.Profiles
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog: The main program
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.CPlanner: The main program for the CPlanner.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.DAXValidator
main(String[]) - Static method in class edu.isi.pegasus.planner.client.ExitCode
main(String[]) - Static method in class edu.isi.pegasus.planner.client.NetloggerExitcode: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.PartitionDAX: The main function of the class, that is invoked by the jvm.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.PegasusGetSites: The main program
main(String[]) - Static method in class edu.isi.pegasus.planner.client.PlotNodeUsage: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.RankDAX: The main program for the CPlanner.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.RCClient: Manipulate entries in a given replica catalog implementation.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.SCClient
main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCClient
main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCConverter: The main function
main(String[]) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: The main test program.
main(String[]) - Static method in class edu.isi.pegasus.planner.client.VersionNumber
main(String[]) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser: A Test program.
main(String[]) - Static method in class edu.isi.pegasus.planner.dax.ADAG: Create an example DIAMOND DAX
main(String[]) - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
main(String[]) - Static method in class edu.isi.pegasus.planner.namespace.TestNamespace
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The main program.
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.IVPTest
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TestDAXParser: The main program to TestDAXParser.
main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Test function.
main(String[]) - Static method in class edu.isi.pegasus.planner.provisioner.Estimator
main(String[]) - Static method in class edu.isi.pegasus.planner.ranking.GetDAX: For Testing purposes only.
main(String[]) - Static method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The main program that allows you to test.
main(String[]) - Static method in class edu.isi.pegasus.planner.transfer.TestTPT
main(String[]) - Static method in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter
main(String[]) - Static method in class ShowProperties: Runs the main program.
MainEngine - Class in edu.isi.pegasus.planner.refiner: The central class that calls out to the various other components of Pegasus.
MainEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.MainEngine: This constructor initialises the class variables to the variables passed.
MAINJOB_MARKER - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: The marker for the MAINJOB.
MAJOR - Static variable in class edu.isi.pegasus.common.util.Version: This constant defines the major version number.
MAJOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: The constant for the major version type.
major - Variable in class VersionTask: member variable to obatain the major version number.
makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Enables the abstract clustered job for execution and converts it to it's executable form
makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: Enables the abstract clustered job for execution and converts it to it's executable form.
makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Enables the abstract clustered job for execution and converts it to it's executable form.
makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator: Enables the abstract clustered job for execution and converts it to it's executable form
makeCreateDirJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: It creates a make directoryURL job that creates a directoryURL on the remote pool using the perl executable that Gaurang wrote.
makeCreateDirJob(String, String, String) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Implementation: It creates a make directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
makeDummyConcatJob(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass: It creates a dummy concat job that is run at the local submit host.
makeRCRegNode(String, Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: It constructs the Job object for the registration node, which registers the materialized files on the output pool in the RLS.
makeRedDagObject(ADag, Vector) - Method in class edu.isi.pegasus.planner.refiner.ReductionEngine: makes the Reduced Dag object which corresponding to the deleted jobs which are specified.
makeRemoveDirJob(String, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: It creates a remove directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
makeRemoveDirJob(String, String, List<String>) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory: It creates a remove directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
makeUntarJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: It creates a untar job , that untars the worker package that is staged by the setup transfer job.
MALFORMED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace: Either the key or the value specified is null or malformed.
malformedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Warns about a namespace profile key-value pair that is malformed.
mAliases - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Set of alias names to be used for lookup.
mAllDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine: List of all deleted jobs during workflow reduction.
mAllDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: all deleted jobs.
map(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser: Helper function to map prefixes correctly onto the elements.
MapGraph - Class in edu.isi.pegasus.planner.partitioner.graph: An implementation of the Graph that is backed by a Map.
MapGraph() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph: The default constructor.
MapGraph.MapGraphIterator - Class in edu.isi.pegasus.planner.partitioner.graph: An inner iterator class that traverses through the Graph.
MapGraph.MapGraphIterator() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator: The default constructor.
mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob: Maps a job in the workflow to the various grid sites.
mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Calls out to the external site selector.
mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.Random: Maps a job in the workflow to an execution site.
mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin: Maps a job in the workflow to an execution site.
mapJob2ExecPool(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The call out to the site selector to determine on what pool the job should be scheduled.
Mapper - Class in edu.isi.pegasus.planner.catalog.transformation: This is an interface for generating valid TC maps which will be used for executable staging.
Mapper(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.Mapper: The private constructor.
mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Abstract: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.Group: The call out to map a list of jobs on to the execution pools.
mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Heft: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(Graph, List) - Method in class edu.isi.pegasus.planner.selector.site.Heft: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(Graph, List, String) - Method in class edu.isi.pegasus.planner.selector.site.Heft: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(Graph, List) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector: Maps the jobs in the workflow to the various grid sites.
mapWorkflow(ADag, List) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector: Maps the jobs in the workflow to the various grid sites.
mArch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: An optional architecture type for the grid gateway.
mArch - Variable in class edu.isi.pegasus.planner.dax.Executable: Architecture the executable is compiled for
mArchitecture - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The architecture.
mArchType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The architecture type of the remote machines to which the jobmanager talks to.
mArguments - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mArgumentTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
mAssignDefaultJobPriorities - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Boolean indicating whether to assign job priorities or not.
mAssociatedJob - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: The jobname for which the reading was taken.
mAssociatedJob - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: The jobname for which the reading was taken.
matches() - Method in class edu.isi.pegasus.common.util.Version: Determines, if the compiled version and the installed version match.
matches(String) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: Matches a string against the compiled regex expression
matchForStarProperties(String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Returns a matching pegasus property for a VDS star property.
matchingSubset(String, boolean) - Method in class edu.isi.pegasus.common.util.CommonProperties: Extracts a specific property key subset from the known properties.
matchingSubset(Properties, String, boolean) - Static method in class edu.isi.pegasus.common.util.CommonProperties: Extracts a specific property key subset from the properties passed.
matchingSubset(Properties, String, boolean) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Extracts a specific property key subset from the known properties.
matchingSubset(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties: Extracts a specific property key subset from the known properties.
matchMe(ReplicaCatalogEntry, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile: Attempts to see, if all keys in the partial replica catalog entry are contained in the full replica catalog entry.
mAttributeMap - Variable in class edu.isi.pegasus.planner.invocation.MachineInfo: An internal maps that is indexed by attribute keys.
mAttributes - Variable in class edu.isi.pegasus.common.util.XMLWriter
mAuthenticate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Whether to attempt authentication against the jobmanagers for the pools specified at runtime.
mAverageCommunicationCost - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The average communication cost between nodes.
mAvgComputeTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The average compute time for a node.
MAX - Class in edu.isi.pegasus.planner.namespace.aggregator: An implementation of the Aggregator interface that takes the maximum of the profile values.
MAX() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MAX
max - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
max_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Max_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
MAX_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
MAX_COUNT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the maximum number of jobs that can be in the queue.
MAX_CPU_TIME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The constant to be passed to the accessor functions to get or set the maxwalltime for the jobs.
MAX_KEYS_PREFIX - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The prefix for the max keys
MAX_NUMBER_OF_VERSION_COMPONENTS - Static variable in class edu.isi.pegasus.common.util.CondorVersion: The maximum number of components version can have.
MAX_RUN_TIME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the key that if set in the Pegasus namespace specifies the maximum amount of time for which a cluster should run.
MAX_VERSION_PRECISION - Static variable in class edu.isi.pegasus.common.util.CondorVersion: The maximum number of digits each component of version can have.
MAXIDLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The key name for max idle setting for dagman
MAXIMUM_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The maximum finish time possible for a job.
maxIndex - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
MAXJOBS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The key name for max jobs setting for dagman
MAXPOST_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The key name for max post setting for dagman
MAXPRE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman: The key name for max pre setting for dagman
mBag - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: Handle to the PegasusBag
mBag - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3: The bag of Pegasus Initialization objects
mBag - Variable in class edu.isi.pegasus.planner.client.CPlanner: The object containing the bag of pegasus objects
mBag - Variable in class edu.isi.pegasus.planner.client.RankDAX: The bag of objects that Pegasus requires.
mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: The bag of initialization objects
mBag - Variable in class edu.isi.pegasus.planner.code.generator.Abstract: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.generator.Braindump: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Bag of Pegasus objects
mBag - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.generator.Metrics: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
mBag - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: The bag of objects used for initialization.
mBag - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: A Bag of objects that maybe associated with the node.
mBag - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Bag of Pegasus objects
mBag - Variable in class edu.isi.pegasus.planner.ranking.Rank: The pegasus bag.
mBag - Variable in class edu.isi.pegasus.planner.refiner.Engine: The bag of initialization objects
mBag - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser: The bag of initialization objects.
mBag - Variable in class edu.isi.pegasus.planner.selector.site.Abstract: The bag of Pegasus objects.
mBandWidths - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
mBaseDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The base submit directory.
mBaseDir - Variable in class edu.isi.pegasus.planner.client.RankDAX: The base directory where the ranked daxes are kept.
mBasename - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The default basename given to the files.
mBasename - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The default basename given to the files.
mBasename - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The basename of the files.
mBasename - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The basename of the files.
mBasenamePrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The basename prefix that is to be given to the per workflow file, like the log file, the .dag file, the .cache files etc.
mBaseSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The base submit directory where the files are being created.
mBoolean - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag: The boolean value
mBuffer - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments: Handle to a job arguments to handle mixed content.
mBundles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: The list of Chain object.
mCacheFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Set of cache files that need to be used, to determine the location of the transiency files.
mCacheStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The replica store in which we store all the results that are queried from the cache replica catalogs.
mCallback - Variable in class edu.isi.pegasus.common.util.StreamGobbler: The callback to be used.
mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The handle to the class implementing the callback interface.
mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3: Handle to the callback
mCallback - Variable in class edu.isi.pegasus.planner.parser.PDAXParser: The callback handler to which the callbacks are sent during designated points of parsing the pdax.
mCallback - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser: The callback object.
mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: The maximum number of transfer jobs that are allowed for this particular pool.
mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: The maximum number of transfer jobs that are allowed for this particular site.
mCatalog - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
mChain - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain: The linked list that maintians the chain of names of the transfer jobs.
mChild - Variable in class edu.isi.pegasus.planner.parser.PDAXParser: The current child.
mChildren - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The list of children of the job/node in the abstract graph.
mChmodDisabledForAllSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: A boolean indicating whether chmod is disabled for all sites.
mChmodOnExecutionSiteMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: A map indexed by the execution site and value is the path to chmod on that site.
mClassname - Variable in exception edu.isi.pegasus.common.util.FactoryException: The name of the class that was trying to be instantiated when this error occured, or some other signifier like module name.
mCleanup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: A boolean indicating whether to do cleanup or not.
mCleanupDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The cleanup dag for the final concrete dag.
mCleanupScope - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The cleanup scope for the workflows.
mCleanupScope - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The cleanup scope for the workflows.
mCleanupSpace - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Indicates whether the space denoted is the amount of space cleaned up.
mClosedElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
mClusteredADag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The handle to the ADag object that contains the workflow being clustered.
mClusteredRelations - Variable in class edu.isi.pegasus.planner.cluster.Abstract: The collection of relations, that is constructed for the clustered workflow.
mClusterer - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Denotes what type of clustering needs to be done
mClusterer - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback: The handle to the clusterer that does the clustering.
mClustererTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory: The table that maps a clustering technique to a clustering impelemntation.
mCollapseMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: Map to hold the collapse values for the various execution pools.
mCollectorHost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The collector host to query to.
mColor - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The color the node is colored.
mCompiledPatterns - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Stores compiled patterns at first use, quasi-Singleton.
mCompoundTransformations - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Map of Compound Transfomations indexed by complete name of the compound transformation.
mConcDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The handle to the workflow that is being enabled.
mConcDag - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The concrete dag so far, for which the clean up dag needs to be generated.
mConcreteWorkflow - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The workflow for which the code has to be generated.
mCondorStatusError - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The List storing the stderr of condor-status.
mCondorStatusOutput - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The List storing the output of condor-status.
mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The long value of condor version.
mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The long value of condor version.
mCondorVersion - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The long value of condor version.
mConnected - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: A boolean variable tracking whether catalog is connected or not
mConnection - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Maintains the connection to the database over the lifetime of this instance.
mConnection - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Maintains the connection to the database over the lifetime of this instance.
mConnection - Variable in class edu.isi.pegasus.planner.catalog.work.Database: Maintains the connection to the database over the lifetime of this instance.
mConnection - Variable in class edu.isi.pegasus.planner.ranking.GetDAX: Maintains the connection to the database over the lifetime of this instance.
mConnectionError - Static variable in class edu.isi.pegasus.planner.catalog.work.Database: This message is sent whenever one of the member function is executed which relies on an established database context.
mConnectionParams - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: Collection of connection parameters to use for connecting to that replica catalog.
mConstituentJobs - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob: The collection of jobs that are contained in the aggregated job.
mContact - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The contact string for the grid gateway.
mContent - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The content associated with this node.
mCount - Variable in class edu.isi.pegasus.planner.dax.ADAG: The Count of the number of dax objects : N
mCount - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback: The number of times the word appears.
mCreateEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The engine that ends up creating random directories in the remote execution pools.
mCreateRegistrationJobs - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default: Boolean indicating whether to create registration jobs or not.
mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: Handler to the Credential Handler factory.
mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: Handle to the Credential Handler Factory
mCredentialsType - Variable in class edu.isi.pegasus.planner.classes.Job: Set of credential types required by a job.
mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: The statement to prepare to slurp attributes.
mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.work.Database: The statement to prepare to slurp attributes.
mCStatements - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX: The statement to prepare to slurp attributes.
mCurrentChildId - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: These store the current child element for the child parent relationship.
mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.CreateDirectory: It is a reference to the Concrete Dag so far.
mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: It is a reference to the Concrete Dag so far.
mCurrentDepth - Variable in class edu.isi.pegasus.planner.parser.PDAXParser: The current depth of parsing through the xml structure.
mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.BFS: The current depth of the nodes that are being traversed in the BFS.
mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator: The current depth of the nodes that are being traversed in the BFS.
mCurrentJobSubInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Holds information regarding the current job being parsed.
mCurrentLevel - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin: The current level in the abstract workflow.
mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: The number of jobs about which the callback interface has knowledge.
mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The number of jobs about which the callback interface has knowledge.
mCurrentProcessorIndex - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site: The index to the processor that is to be used for scheduling a job.
mCurrentSILevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: The current level of the jobs being traversed.
mCurrentSOLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The current level of the jobs being traversed.
mDAG - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: ADag object containing the jobs that have been scheduled by the site selector.
mDAG - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
mDAG - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: The workflow object.
mDag - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: ADag object corresponding to the Dag whose jobs we want to schedule.
mDag - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The DAG being worked upon.
mDag - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The DAG object to which the transfer nodes are to be added.
mDAG - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The ADag object associated with the Dag.
mDAGFile - Variable in class edu.isi.pegasus.planner.classes.DAGJob: The DAG File that the job refers to.
mDagInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: The DAGInfo object which contains information corresponding to the ADag in the XML file.
mDAGLFN - Variable in class edu.isi.pegasus.planner.classes.DAGJob: The DAG LFN.
mDAGLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The file attribute encountered in the dag element.
mDAGManKnobs - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: Any extra arguments that need to be passed to dagman, as determined from the properties file.
mDagWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The file handle to the .dag file.
mDAGWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The print writer handle to DAG file being written out.
mDatabase - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database type.
mDatabaseAbsolutePath - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the absolute path to the mysql home directory
mDatabaseHost - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the database host name
mDatabaseHost - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database host .
mDatabaseName - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the database name
mDatabaseName - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database name.
mDatabasePassword - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database user password.
mDatabaseTC - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
mDatabaseURL - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database type.
mDatabaseUserName - Variable in class edu.isi.pegasus.planner.client.TCConverter: The database user name.
mDate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Stores the time at which the planning process started.
mDate - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: Holds the timestamp when usage was taken.
mDate - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: Holds the timestamp when usage was taken.
mDAXFile - Variable in class edu.isi.pegasus.planner.classes.DAXJob: The DAX File that the job refers to.
mDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The dax file which contains the abstract dag.
mDAXFile - Variable in class edu.isi.pegasus.planner.client.PartitionDAX: The path to the dax file that is to be partitioned.
mDaxFile - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter: The dax file that is being partitioned.
mDAXInMemory - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The flag to identify that dax is in memory.
mDAXJobIDToSubmitDirectoryCacheFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Maps a sub dax job id to it's submit directory.
mDAXLabel - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The label of the dax.
mDAXLFN - Variable in class edu.isi.pegasus.planner.classes.DAXJob: The DAX LFN.
mDAXLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The file attribute encountered in the dax element.
mDAXMTime - Variable in class edu.isi.pegasus.planner.classes.DagInfo: Keeps the last modified time of the DAX.
mDAXPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The path to the DAX that was planned by the workflow.
mDAXReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The DAX Replica Store.
mDaxSchemaVersion - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
mDAXTransformationStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Handle to the transformation store that stores the transformation catalog user specifies in the DAX
mDAXVersion - Variable in class edu.isi.pegasus.planner.classes.DagInfo: The DAX Version
mDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: The handle to the dax writer that writes out the dax corresponding to the partition identified.
mDebugLevel - Variable in class edu.isi.pegasus.common.logging.LogManager: The debug level.
mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: A boolean indicating whether to have a deep directory structure for the storage directory or not.
mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: A boolean indicating whether to have a deep directory structure for the storage directory or not.
mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: A boolean indicating whether to have a deep directory structure for the storage directory or not.
mDefaultAggregator - Static variable in class edu.isi.pegasus.planner.namespace.Globus: The default aggregator to be used for profile aggregation, if none specified in the aggregator table;
mDefaultBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: The default bundle value to use.
mDefaultCallback - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: An instance of the default stream gobbler callback implementation that is used for creating symbolic links.
mDefaultGroup - Static variable in class edu.isi.pegasus.planner.selector.site.Group: The name of the group into which jobs are grouped if no group is specified in the dax.
mDefaultPoolFile - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The default path to the pool file.
mDefaultProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: The Default Pegasus profile key to use for lookup
mDefaultTC - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The default path to the transformation catalog.
mDefaultTCRCCreated - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: A boolean indicating whether the attempt to create a default tc entry has happened or not.
mDefaultTCRCEntry - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The default tc entry.
mDefaultTransferPriority - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The default transfer priority that needs to be applied to the transfer jobs.
mDeferredRun - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: A boolean indicating whether the planner invocation is part of a larger deferred planning run.
mDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: Holds all the jobs deleted by the reduction algorithm.
mDeletedLeafJobs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: Holds the jobs from the original dags which are deleted by the reduction algorithm.
mDependencies - Variable in class edu.isi.pegasus.planner.dax.ADAG: Map of Dependencies between Job,DAX,DAG objects.
mDeprecatedProperties - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The set containing the deprecated properties specified by the user.
mDeprecatedTable - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus: The table containing the mapping of the deprecated keys to the newer keys.
mDepth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
mDepth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
mDepth - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: Count the depths of elements in the document
mDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The depth of the node from the root or any arbitary node.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Default: A short description of the replica selector.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Local: A short description of the replica selector.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex: A short description of the replica selector.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted: A short description of the replica selector.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.Group: The description of the site selector.
mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The description of the site selector.
mDestMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer: The map containing all the destination urls keyed by the pool id/name.
mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAGJob: The directory in which the DAG needs to execute.
mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAXJob: The directory in which the DAX needs to execute.
mDirectory - Variable in class edu.isi.pegasus.planner.classes.Job: The directory in which the job should run.
mDirectory - Variable in class edu.isi.pegasus.planner.client.PartitionDAX: The directory in which the partition daxes are generated.
mDirectory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The directory, where the stdin file of the fat jobs are created.
mDirectory - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser: The directory, where the stdin file of the fat jobs are created.
mDirectory - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The directory where all the files reside.
mDirectory - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The directory where the files are to be generated.
mDirectory - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The directory where the files are to be generated.
mDirectory - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The directory where all the files reside.
mDisabledChmodSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The set of sites for which chmod job creation has to be disabled while doing executable staging.
mDisableInvokeFunctionality - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Boolean indicating whether to disable invoke functionality.
mDisplayHelp - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: To Display help or not.
mDone - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: A boolean indicating whether the files have been generated or not.
mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: A flag to specify whether the graph has been generated for the partition or not.
mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: A flag to specify whether the graph has been generated for the partition or not.
mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: A flag to specify whether the graph has been generated for the partition or not.
mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: A flag to specify whether the graph has been generated for the partition or not.
mDone - Variable in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
mDone - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: A flag to store whether the parsing is complete or not.
mDoNotClean - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: HashSet of Files that should not be cleaned up
mDoStat - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: A boolean indicating whether to stat files or not.
mDownwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The downward rank for a node.
mDriver - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the driver string
Mds_Computer_Isa - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Computer_Total_Free_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Computer_Total_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Gram_Job_Queue_MaxCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Gram_Job_Queue_MaxCpuTime - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Gram_Job_Queue_MaxJobsInQueue - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Gram_Job_Queue_MaxRunningJobs - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Memory_Ram_FreeSizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Memory_Ram_Total_SizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Os_Name - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Service_Gram_SchedulerType - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Mds_Subnetid - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
mdsbaseDN - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
mdshost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
mdsport - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
MdsQuery - Class in edu.isi.pegasus.planner.catalog.site.impl.old: This Class queries the GT2 based Monitoring and Discovery Service (MDS) and stores the remote sites information into a single data class.
MdsQuery() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery: C'tor for the class.
MdsQuery(String, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery: Valid C'tor for the class to create a MdsQuery object.
mDynamicDeployment - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: A boolean indicating whether kickstart is deployed dynamically or not.
Measurement - Interface in edu.isi.pegasus.planner.visualize: An empty interface that is the super interface for all measuremnts we take from the kickstart records.
MeasurementComparator - Class in edu.isi.pegasus.planner.visualize: Comparator for Measurement objects that allows us to sort on time.
MeasurementComparator() - Constructor for class edu.isi.pegasus.planner.visualize.MeasurementComparator
measurementsIterator() - Method in class edu.isi.pegasus.planner.visualize.JobMeasurements: Returns the readings iterator.
mElement - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
mEmptyElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: An instance variable to track if enabling is happening as part of a clustered constituentJob.
mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: An instance variable to track if enabling is happening as part of a clustered job.
mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: An instance variable to track if enabling is happening as part of a clustered job.
mEndSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork: The nice end separator, define once, use often.
mEndTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The end time for the planning.
mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The estimated end time for a job.
mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor: The end time of the current scheduled job.
mEnvVar - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The map that contains the environment variables including the default ones that are set while calling out to the site selector unless they are overridden by the values set in the properties file.
merge(ReplicaCatalogEntry, ReplicaCatalogEntry, boolean) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Merges the attribute maps of two entries in a controlled fashion.
merge(ReplicaCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry: Merges the attribute maps in a controlled fashion.
merge(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation: Merges the ReplicaLocation object to the existing one, only if the logical filenames match.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Condor: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Dagman: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.ENV: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Globus: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Hints: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Pegasus: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Selector: Merge the profiles in the namespace in a controlled manner.
merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Stat: Merge the profiles in the namespace in a controlled manner.
mergeProfiles(Job) - Method in class edu.isi.pegasus.planner.classes.Job: Merges profiles from another job to this job in a controlled fashion.
mErrStream - Variable in class edu.isi.pegasus.common.logging.logger.Default: The stream to which all the error messages are logged.By default it is System.err
mEscape - Static variable in class edu.isi.pegasus.planner.classes.Profile: A private static handle to the escape class.
MESSAGE_DONE_PREFIX - Static variable in class edu.isi.pegasus.common.logging.LogManager: Suffx for an event completion message.
MetaData - Class in edu.isi.pegasus.planner.dax: Metadata object for the DAX API
MetaData(MetaData) - Constructor for class edu.isi.pegasus.planner.dax.MetaData: Copy constructor
MetaData(String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData: Create a new Metadata object
MetaData(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData: Create a new Metadata object
method - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
Metrics - Class in edu.isi.pegasus.planner.code.generator: A Metrics file generator that generates a metrics file in the submit directory The following metrics are logged in the metrics file
Metrics() - Constructor for class edu.isi.pegasus.planner.code.generator.Metrics
METRICS_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics: The suffix to use while constructing the name of the metrics file
mEventBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent: The buffer that stores information about the event
mExecPools - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Set of the execution pools which the user has specified.
mExecPools - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The pools on which the Dag should be executed as specified by the user.
mExecPools - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin: The list of pools that have been given by the user at run time or has been authenticated against.
mExecutable - Variable in class edu.isi.pegasus.planner.dax.File: Is the file an executable.
mExecutables - Variable in class edu.isi.pegasus.planner.dax.ADAG: The list of Executable objects
mExecutionToHintsNamespace - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The map that maps keys in execution tag to hints namespace.
mExitParserArguments - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The argument string containing the arguments with which the exitcode is invoked on kickstart output.
mExitParserPath - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The path to the exitcode client that parses the exit status of the kickstart.
mExtraArguments - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: Any extra arguments that need to be passed ahead to the s3 client invocation.
mFactory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The handle to the file factory, that is used to create the top level directories for each of the partitions.
mFactory - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The handle to the file factory, that is used to create the top level directories for each of the partitions.
mFailOnFirstError - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Flag indicating whether to fail on first hard error or not.
mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML: The Site Catalog file to be parser.
mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3: The Site Catalog file to be parser.
mFilename - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode: The kickstart file being parsed.
mFileName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter: The fully qaulified path to the file being written.
mFiles - Variable in class edu.isi.pegasus.planner.dax.ADAG: The list of edu.isi.pegasus.planner.dax.File objects
mFileServers - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: The list of file servers that can be used to write to access this directory.
mFilesInRC - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the files whose locations are returned from the ReplicaCatalog
mFileTable - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default: A Map containing information about which logical file has been transferred to which site and the name of the stagein transfer node that is transferring the file from the location returned from the replica catalog.
mFileTXList - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The collection of FileTransfer objects containing the transfers the job is responsible for.
mFlags - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: The transient flags field which is kept as a bit field.
mFlowTimestamp - Variable in class edu.isi.pegasus.planner.classes.DagInfo: The ISO timestamp corresponding to the time when Pegasus is invoked for a dax.
mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Boolean indicating whether to flush the contents back to the file on close.
mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Boolean indicating whether to flush the contents back to the file on close.
mForce - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The force option to make a build dag from scratch.
mForceReplan - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns the force replan option
mFormatter - Static variable in class edu.isi.pegasus.common.logging.logger.Default: This is used to format the time stamp.
mForwardOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The options that need to be passed forward to pegasus-run.
mFreeMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The free memory that the jobmanager reports.
mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: The free space on the file system.
mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The free space at the grid ftp server.
mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir: The free space available at the file system under this directory.
mFTMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The FileTransfer map indexed by site id.
mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: A boolean indicating whether to generate lof files or not.
mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: A boolean indicating whether to generate lof files or not.
mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: A boolean indicating whether to generate lof files or not.
mGenRandomDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Whether to create a random directory in the execution directory that is determined from the exec mount point in the pool configuration file.
mGlibc - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The Glibc version.
mGlibc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Optional information about the glibc.
mGlibc - Variable in class edu.isi.pegasus.planner.dax.Executable: Glibc the executable is compiled for
mGlobalIgnoredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted: The Set of ignored sites, that are ignored for selecting replicas for all sites.
mGlobalLog - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Flag indicating whether a global log file or per job file.
mGlobalPreferredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted: The set of preferred sites, that are preferred stagein sites for all sites.
mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The version of Globus Toolkit that was used to install the grid ftp server.
mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The globus version that is installed on the remote site.
mGraph - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: The partition that has to be sorted.
mGraph - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner: The map containing all the graph nodes.
mGraph - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser: The internal map that contains the adjacency list representation of the Graph referred to by the workflow.
mGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The grid for which to query MYOSG
mGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The grid to which the user belongs to.
mGRID - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The Grid for which information is required.
mGrid - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
mGridFTPList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The list of GridFTPServer objects that contain the information about the gridftp servers on the remote site.
mGridGateways - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: Map of grid gateways at the site for submitting different job types.
mGridLaunch - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The path to the kickstart on the remote site.
mGridStartFactory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The handle to the GridStart Factory.
mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The handle to the GridStart Factory.
mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.Shell: The handle to the GridStart Factory.
mGridStartImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: A table that maps short names of GridStart implementations with the implementations themselves.
mGroupMap - Variable in class edu.isi.pegasus.planner.selector.site.Group: The map containing the the jobs grouped by the key group.
mHandle - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The handle to the site, usually name of the site.
mHasBeenRenderedToExecutableForm - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob: Boolean indicating whether a job has been fully rendered to an executable job or not i.e the aggregated job has been mapped to the aggregator and the constituent jobs have been gridstarted or not.
mHeader - Variable in class edu.isi.pegasus.common.util.XMLWriter
mHeadFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The handle to the head node filesystem.
mHeft - Variable in class edu.isi.pegasus.planner.ranking.Rank: The handle to the ranking algorithm.
mHeftImpl - Variable in class edu.isi.pegasus.planner.selector.site.Heft: An instance of the class that implements the HEFT algorithm.
micro0 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
micro1 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
micro2 - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
mID - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The site identifier.
mId - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mID - Variable in class edu.isi.pegasus.planner.partitioner.Partition: The partition id of the partition.
mIDCounter - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal: The global counter that is used to assign ID's to the partitions.
mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The number of idle nodes.
mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The total number of idle nodes that the jobmanager reports are on the remote site.
mIgnoredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted: A Map indexed by site handles, that contains a set of site handles.
mImpl - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The handle to the CleanupImplementation instance that creates the jobs for us.
mImpl - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: The implementation instance that is used to create a create dir job.
mImplementingClassNameTable - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
mImplementingClassTable - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: A table that maps, Pegasus style keys to appropriate classes implementing the CredentialHandler interface
mImplementingClassTable - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: A table that maps, Pegasus style keys to appropriate classes implementing the JobAggregator interface
mImplementingClassTable - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: A table that maps, Pegasus style keys to appropriate classes implementing the CondorStyle interface
MIN - Class in edu.isi.pegasus.planner.namespace.aggregator: An implementation of the Aggregator interface that takes the minimum of the profile values.
MIN() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MIN
min_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Min_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
MIN_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: An array that contains the number of incoming edges to a node.
mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.Topological: An array that contains the number of incoming edges to a node.
mIndex - Variable in class edu.isi.pegasus.planner.dax.ADAG: The Index of the dax object.
mIndex - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: The index of the partition that is being written out.
mIndex - Variable in class edu.isi.pegasus.planner.partitioner.Partition: The index associated with the partition.
mIndex - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: index to do conversions between units.
mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: A Map that returns the index into mInDegree map for a particular node in graph.
mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.Topological: A Map that returns the index into mInDegree map for a particular node in graph.
mInheritedRCFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Set of replica catalog files that are inherited by a planning instance.
mInheritedReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The inherited Replica Store
mInitialized - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory: A boolean indicating that the factory has been initialized.
mInitialized - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: A boolean indicating that the factory has been initialized.
mInitialized - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory: A boolean indicating that the factory has been initialized.
mInitialized - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: A boolean indicating that the factory has been initialized.
mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: A boolean indicating whether grid start has been initialized or not.
mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.Shell: A boolean indicating whether grid start has been initialized or not.
MINOR - Static variable in class edu.isi.pegasus.common.util.Version: This constant defines the minor version number.
MINOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: The constant for the minor version type.
minor - Variable in class VersionTask: member variable to obatain the minor version number.
mInputDir - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The input directory containing the kickstart records.
mInputDir - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The input directory containing the kickstart records.
mInputFile - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: The input directory containing the kickstart records.
mInputFiles - Variable in class edu.isi.pegasus.planner.client.SCClient: The input files.
mInputFiles - Variable in class edu.isi.pegasus.planner.client.TCConverter: The input files.
mInputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient: The input format for the site catalog.
mInputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter: The input format for the transformation catalog.
mInputReader - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner: Stores the stream from which we are currently scanning.
mInstalled - Variable in class edu.isi.pegasus.planner.dax.Executable: Flag to mark if the executable is installed or can be staged.
mInstance - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory: The singleton instance of the PPS implementation that is returned.
mInternalMount - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType: The internal mount point for the directory.
MINUTES_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The minutes unit for the x axis.
MINUTES_TIMING_UNITS - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The minutes unit for the x axis.
mInvocationList - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: List of Invocation maps.
mInvocationMap - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The Map of key value pairs that are to be logged via Netlogger.
mInvocationParser - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser: Semi-singleton, dynamically instantiated once for the lifetime.
mInvokeAlways - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: A boolean indicating whether to use invoke always or not.
mInvokeLength - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The invoke limit trigger.
mInvokeMap - Variable in class edu.isi.pegasus.planner.classes.Notifications: An enum map that associates the various notification events with the list of actions that need to be taken.
mInvokes - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mInvokes - Variable in class edu.isi.pegasus.planner.dax.ADAG: List of Notification objects
mInvokes - Variable in class edu.isi.pegasus.planner.dax.Executable: List of Notification objects
mInvokes - Variable in class edu.isi.pegasus.planner.dax.Transformation
mIPEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The handle to the InterPool Engine that calls out to the Site Selector and maps the jobs.
mIPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler: The input stream that is to be read from.
missingKeyError(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite: Constructs an error message in case of style mismatch.
mJMStore - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: A Map store that stores JobMeasurements objects indexed by the name of the jobs.
mJob - Variable in class edu.isi.pegasus.planner.classes.FileTransfer: The logical name of the asssociated VDS super node, with which the file is associated.
mJobAggregator - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob: Handle to the JobAggregator that created this job.
mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Abstract: The handle to the job aggregator factory.
mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: The handle to the job aggregator factory.
mJobComparator - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal: A singleton access to the job comparator.
mJobExecutablesStaged - Variable in class edu.isi.pegasus.planner.classes.Job: Boolean indicating whether the job executables were staged for it or not.
mJobID - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode: The id of the job.
mJobInSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Stores in bytes the size of all the input files for a job.
mJobManagerList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The list of JobManager objects that contain the information about the jobmanagers associated with the remote site.
mJobManagerType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The type of remote scheduler to which the jobmanager talks to.
mJobMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: Map to hold the jobs sorted by the label of jobs in dax.
mJobMap - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: The mapping of the idrefs of a job to the job name.
mJobMap - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The internal map that maps the partition id to the job responsible for executing the partition..
mJobMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The map containing all the jobs in the dax indexed by the job id.
mJobMeasurements - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: Stores all the space readings for the current invocation record.
mJobName - Variable in class edu.isi.pegasus.planner.namespace.Dagman: The name of the job (jobname) to which the profiles for this namespace belong.
mJobOutSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Stores in bytes the size of all the output files for a job.
mJobPrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The prefix that is to be applied while constructing job names.
mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The job prefix that needs to be applied to the job file basenames.
mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3: A job prefix specifed at command line.
mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: The job prefix that needs to be applied to the job file basenames.
mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The job prefix that needs to be applied to the job file basenames.
mJobPrefix - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The job prefix that needs to be applied to the job file basenames.
mJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG: The List of Job,DAX and DAG objects
mJobsInQueue - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The number of jobs in the remote queue at the remote site.
mJobSpace - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Stores all the space readings for the current invocation record.
mJobSpaceStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: A Map store that stores JobSpace objects indexed by the name of the jobs.
mJobType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The type of jobs that this grid gateway can accept.
mKeepTMP - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The tristate value for whether keeping the temporary files generated or not.
mKeepTmpFile - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: A boolean variable that tracks whether to keep the temp xml file or not.
mKey - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection: The connection key.
mKey - Variable in class edu.isi.pegasus.planner.classes.Profile
mKey - Variable in class edu.isi.pegasus.planner.dax.MetaData: Metadata Key
mKey - Variable in class edu.isi.pegasus.planner.dax.Profile: Key of the profile
mKickstartGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Handle to kickstart GridStart implementation.
mKickstartLabel - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The label that is passed to kickstart.
mLabel - Variable in class edu.isi.pegasus.planner.dax.Parent: The edge label for the parent child relationship.
mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The label of the abstract dax as set by Chimera.
mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: The label of the abstract dax.
mLabel - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The label of the workflow.
mLabelKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph: The profile key that is used for the labelling.
mLastAddedNode - Variable in class edu.isi.pegasus.planner.partitioner.Partition: A pointer to the last added node to the partition.
mLevel - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback: The level on which the messages are to be logged.
mLevelList - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator: A temporary list that stores all the nodes on a particular level.
mLFN - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation: The LFN associated with the entry.
mLineSeparator - Variable in class edu.isi.pegasus.common.util.XMLWriter
mLink - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: Linkage of the file.
mLink - Variable in class edu.isi.pegasus.planner.dax.File
mList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback: The ArrayList where the lines are stored.
mLoadAll - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: A boolean indicating whether to load all sites.
mLoadAll - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser: A boolean indicating whether to load all sites.
mLocalDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType: The local directory on the node.
mLocalEnv - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The namespace object holding the environment variables for local pool.
mLocalIrodsEnv - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The path to the irodsEnv file on the submit host (local pool).
mLocalIrodsEnvBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The basename of the user irodsEnv file
mLocalPathToPegasusLiteCommon - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The local path on the submit host to pegasus-lite-common.sh
mLocalS3cfg - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The path to the s3cfg file on the submit host (local pool).
mLocalS3cfgBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The basename of the user s3cfg file
mLocalTransfer - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: boolean indicating whether the transfer job needs to run on local site
mLocalTransfers - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Map that indicates whether we need local setup transfer jobs for a site or not.
mLocalURLPrefix - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The local url prefix for the submit host.
mLocalUserProxy - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The path to the user proxy on the submit host (local pool), that is picked up for use in transfer of proxies.
mLocalUserProxyBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The basename of the user proxy , that is picked up for use in transfer of proxies.
mLocator - Variable in class edu.isi.pegasus.planner.parser.Parser: Locator object to determine on which line in the xml has the error occured.
mLog4jConf - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The log4j system property
mLogBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent: The buffer that stores information about the log message
mLogEvent - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent: The current event object.
mLogFormatter - Variable in class edu.isi.pegasus.common.logging.LogManager: The LogFormatter to use to format the message.
mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper: The handle to the netlogger log formatter.
mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The handle to the netlogger log formatter.
mLogger - Variable in class edu.isi.pegasus.common.credential.impl.Abstract: A handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.common.logging.logger.Log4j: The handle to a log4j logger object.
mLogger - Static variable in class edu.isi.pegasus.common.logging.LogManager: Ensures only one object is created always.
mLogger - Variable in class edu.isi.pegasus.common.util.CondorVersion: The default logger.
mLogger - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback: The instance to the logger to log messages.
mLogger - Variable in class edu.isi.pegasus.common.util.StreamGobbler: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.common.util.XMLWriter
mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: The handle to the logging manager.
mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The Logging instance.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: The handle to the log manager.
mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: The LogManager object which is used to log all the messages.
mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The handle to the log manager.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The handle to the log manager.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML: The Logging instance.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3: The handle to the log manager.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: The default logger.
mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Handle to the logger.
mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
mLogger - Variable in class edu.isi.pegasus.planner.catalog.work.Database: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.classes.Data: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the LogManager.
mLogger - Variable in class edu.isi.pegasus.planner.classes.TCMap
mLogger - Variable in class edu.isi.pegasus.planner.client.Executable: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.cluster.Abstract: The handle to the logger object.
mLogger - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The handle to the LogManager that logs all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: The handle to the logger object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Abstract: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Braindump: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: A handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: Handle to the logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Metrics: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper: The handle to pegasus logger used for run.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stork: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.common.PegasusConfiguration: The logger to use.
mLogger - Variable in class edu.isi.pegasus.planner.common.UserOptions: The Logger object used to log the messages.
mLogger - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
mLogger - Variable in class edu.isi.pegasus.planner.dax.ADAG
mLogger - Variable in class edu.isi.pegasus.planner.dax.CatalogType
mLogger - Variable in class edu.isi.pegasus.planner.namespace.Namespace: The LogManager object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The logging object.
mLogger - Variable in class edu.isi.pegasus.planner.parser.Parser: The LogManager object which logs the Pegasus messages.
mLogger - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: The transformation to the logger used to log messages.
mLogger - Variable in class edu.isi.pegasus.planner.parser.XMLErrorHandler: The handle to the logging object that is used to log the messages.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: The handle to the logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Label: The handle to the Logging object.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: Handle to the logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner: The handle to the internal logging object.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: The handle to the logger object.
mLogger - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The handle to the logger.
mLogger - Variable in class edu.isi.pegasus.planner.ranking.GetDAX: The instance to the Logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.ranking.Rank: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The handle to the logger.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The handle to the logging object used for logging.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: The handle to the logging object, that is used to log the messages.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.Engine: The logging object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser: The handle to the logger object.
mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Default: The handle to the logging object that is used to log the various debug messages.
mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Local: The handle to the logging object that is used to log the various debug messages.
mLogger - Variable in class edu.isi.pegasus.planner.selector.site.Abstract: The handle to the logger.
mLogger - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The handle to the LogManager
mLogger - Variable in class edu.isi.pegasus.planner.selector.TransformationSelector
mLogger - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The logging object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The logging object which is used to log all the messages.
mLogger - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor: The handle to the logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The handle to the logging manager.
mLogger - Variable in class edu.isi.pegasus.planner.transfer.TPT: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The handle to the logger.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The handle to the logging object.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: The handle to the logger.
mLogger - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd: The handle to the logging object
mLoggingLevel - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Denotes the logging level that is to be used for logging the messages.
mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode: The logging level to be used.
mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The logging level to be used.
mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The logging level to be used.
mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.SCClient: Denotes the logging level that is to be used for logging the messages.
mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.TCConverter: Denotes the logging level that is to be used for logging the messages.
mLogicalFile - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: The logical name of the file.
mLogicalID - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The logical id of the job as identified in the dax.
mLogicalName - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The logical name of the node as identified in the dax.
mLogMsg - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: The String holding the log message.
mLogMsg - Variable in class edu.isi.pegasus.planner.classes.Data: The String which stores the message to be stored.
mLogMsg - Variable in class edu.isi.pegasus.planner.client.Executable: The error message to be logged.
mLogMsg - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The String containing the messages to be logged.
mLogMsg - Variable in class edu.isi.pegasus.planner.parser.Parser: The String which contains the messages to be logged.
mLogMsg - Variable in class edu.isi.pegasus.planner.refiner.Engine: Contains the message which is to be logged by Pegasus.
mLogMsg - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default: The string holding the logging messages
mLogProgress - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec: Flag to indicate whether to log progress or not.
mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: Stores the look-ahead symbol.
mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner: Captures the look-ahead character.
mLRCList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The list of LRC objects that contain the information about the various LRCs associated with the remote site.
mLRCURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC: The contact string to the lrc e.g rls://sukhna.isi.edu .
mMainJob - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The main job whose record is being parsed.
mMainJob - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The main job whose record is being parsed.
mMainJob - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: The main job whose record is being parsed.
mMajorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: This variable defines the major version number.
mMajorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Stores the major version of the planner.
mMask - Variable in class edu.isi.pegasus.common.logging.logger.Default: The mask that needs to be deployed to determine what messages are to be logged.
mMaxCount - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The maximum number of jobs that can be running on the remote site.
mMaxCPUTime - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The max walltime of the jobs that are run on the remote site.
mMaxDepth - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The max depth of any job in the workflow useful for a priorityQueue implementation in an array
mMDAGPropertiesFile - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The path to the properties file that is written out and shared by all partitions in the mega DAG.
mMeasurementList - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The list of Measurement objects.
mMegadag - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The megadag generation mode.
mMegaDAG - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The abstract dag object that ends up holding the megadag.
mMessage - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent: The current log event message.
mMetadata - Variable in class edu.isi.pegasus.planner.dax.CatalogType
mMetadata - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: The metadata of the workflow.
mMinorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: This variable defines the minor version number.
mMinorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Stores the major version of the planner.
mMonitor - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Boolean indicating whether to spawn off a monitoring process or not for the workflow.
mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: The mount point for the server.
mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: The mount point for the file system.
mMYOSGInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
mName - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The logical mName of the transformation.
mName - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation: The name of the tranformation.
mName - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mName - Variable in class edu.isi.pegasus.planner.dax.ADAG: The Name / Label of the DAX
mName - Variable in class edu.isi.pegasus.planner.dax.Executable: Name of the executable
mName - Variable in class edu.isi.pegasus.planner.dax.File: The logical name of the file.
mName - Variable in class edu.isi.pegasus.planner.dax.Parent: The name of the parent
mName - Variable in class edu.isi.pegasus.planner.dax.Transformation: Name of the transformation
mName - Variable in class edu.isi.pegasus.planner.partitioner.Partition: The name of the partition.
mName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter: The name assigned to the pdax file being written.
mName - Variable in class edu.isi.pegasus.planner.ranking.Ranking: The name of the DAX.
mName - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site: The logical name assigned to the site.
mName - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The name of the job.
mName - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The name of the job.
mNamepsaceToPropertiesPrefix - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
mNamespace - Variable in class edu.isi.pegasus.common.util.XMLWriter
mNamespace - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The logical mNamespace of the transformation
mNamespace - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation: The namespace of the compound transformation.
mNamespace - Variable in class edu.isi.pegasus.planner.classes.Profile
mNamespace - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Executable: Namespace of the executable
mNamespace - Variable in class edu.isi.pegasus.planner.dax.File: The namespace on a file.
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Profile: Namespace of the profile
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Transformation: Namespace of the Transformation
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Condor: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Dagman: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.ENV: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Globus: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Hints: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Pegasus: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Selector: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Stat: The name of the implementing namespace.
mNamespace - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: For holding the namespace if specified in the Profile Element.
mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: The index of the job to which the next transfer for the pool would be scheduled.
mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: The index of the bundle to which the next transfer for the site would be added to.
mNMIArchToVDSArchMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo: The map storing architecture to corresponding NMI architecture platforms.
mNMIOSToVDSOSMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo: The map storing OS to corresponding NMI OS platforms.
mNodeCollapser - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The handle to the node collapser.
mNodeComparator - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal: A static instance of GraphNode comparator.
mNodeIdPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
mNodeLabel - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mNodeList - Variable in class edu.isi.pegasus.planner.partitioner.Partition: The list of GraphNode objects corresponding to the nodes making the partiition.
mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: The set of job id's in the partition.
mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.Partition: The set of node id's in the partition.
mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The set of job id's in the partition.
mNoGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Handle to NoGridStart implementation.
mNonStandardJavaOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The set of non standard java options that need to be passed to the JVM
mNonTPTSite - Variable in class edu.isi.pegasus.planner.classes.TransferJob: The site at which the transfer jobs would have run, had it been running in a peer 2 peer transfer mode (non third party mode).
mNotifications - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: All the notifications associated with the job
mNotifications - Variable in class edu.isi.pegasus.planner.classes.ADag: All the notifications associated with the job
mNotifications - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation: All the notifications associated with the job
mNotifications - Variable in class edu.isi.pegasus.planner.classes.Job: All the notifications associated with the job
mNotifications - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: All the notifications associated with the adag
mNotificationsWriter - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The handle to the PrintWriter that writes out the notifications file
mNum - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement: The number of jobs.
mNumChmodJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
mNumCleanupJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of cleanup jobs.
mNumClusteredJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of clustered compute jobs.
mNumComputeJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of compute jobs.
mNumComputeTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of compute tasks in the DAX
mNumCreateDirJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of create dir jobs.
mNumDAGJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of DAG jobs in the workflow
mNumDAGTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of DAG tasks in the DAX.
mNumDAXJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of dax jobs in the workflow
mNumDAXTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of DAX tasks in the DAX
mNumFormatter - Variable in class edu.isi.pegasus.planner.client.CPlanner: The number formatter to format the run submit dir entries.
mNumFormatter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The number formatter to format the run submit dir entries.
mNumFormatter - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The number formatter to format the run submit dir entries.
mNumFormatter - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: The number formatter to format the run submit dir entries.
mNumFormatter - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The number formatter to format the float entries.
mNumFormatter - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The number formatter to format the float entries.
mNumInterTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of inter-site transfer jobs.
mNumJobsStore - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The number of jobs executing at any given time per site.
mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: The number of jobs that are in the partition.
mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The number of jobs that are in the partition.
mNumOfRescueTries - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The numer of rescue's to try before replanning.
mNumOfTXProcesses - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2: The number of g-u-c processes that are spawned to transfer the files in one transfer job.
mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: The number of streams that each g-u-c process opens to do the ftp transfer.
mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2: The number of streams that each g-u-c process opens to do the ftp transfer.
mNumProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site: The number of processors making up a site.
mNumRegJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of registration jobs.
mNumSITxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of stage in transfer jobs.
mNumSOTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The number of stage-out transfer jobs.
mNumTotalJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics: The total number of jobs in the executable workflow.
mObject - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
MODIFY_FOR_FILE_URLS_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog: Property specify whether to modify file url or not.
modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: Boolean indicating whether to modify the file URL or not
modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Boolean indicating whether to modify the file URL or not
modifyForFileURLS(TransformationCatalogEntry) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract: Modifies a Transformation Catalog Entry to handle file URL's.
modifyForFileURLS(String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract: Modifies a Transformation Catalog Entry to handle file URL's.
modifyJobForFirstLevelStaging(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Modifies a job for the first level staging to headnode.This is to add any files that needs to be staged to the head node for a job specific to the SLS implementation.
modifyJobForFirstLevelStaging(Job, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Modifies a job for the first level staging to headnode.This is to add any files that needs to be staged to the head node for a job specific to the SLS implementation.
modifyJobForFirstLevelStaging(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Modifies a job for the first level staging to headnode.This is to add any files that needs to be staged to the head node for a job specific to the SLS implementation.
modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor: Modifies a compute job for second level staging.
modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS: Modifies a compute job for second level staging.
modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer: Modifies a compute job for second level staging.
modifyURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database: Boolean indicating whether to modify the file URL or not
MONITORD_COMMENT_MARKER - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The marker to designate a line in the input file reserved for monitord purposes.
MonitordNotify - Class in edu.isi.pegasus.planner.code.generator: A MonitordNotify Input File Generator that generates the input file required for pegasus-monitord.
MonitordNotify() - Constructor for class edu.isi.pegasus.planner.code.generator.MonitordNotify
monitorWorkflow() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions: Returns boolean indicating whether we want to monitor or not.
mOPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler: The output stream to which the contents have to be redirected to.
mOptArg - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Designates if the optional argument to the random directory was given.
mOptional - Variable in class edu.isi.pegasus.planner.dax.File: Is the file optional
mOrder - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: The number of nodes in the graph.
mOrgDagRelations - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the dag relations of the orginal dag
mOrgJobsInRC - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the jobs which are found to be in the Replica Catalog.
mOriginalArgumentString - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The argument string with which the planner was invoked.
mOriginalDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The Original Dag object which is constructed by parsing the dag file.
mOriginalDag - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the original dag object which needs to be reduced on the basis of the results returned from the Replica Catalog
mOS - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The Operating System.
mOS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: An optional os type for the grid gateway.
mOs - Variable in class edu.isi.pegasus.planner.dax.Executable: Os the executable is compiled for
mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The Operating System Release.
mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Optional information about the os release.
mOsRelease - Variable in class edu.isi.pegasus.planner.dax.Executable: Os release the executable is compiled for
mOSToNMIOSReleaseAndVersion - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The map storing OS to corresponding NMI OS platforms.
mOSType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The operating system type type of the remote machines to which the jobmanager talks to.
mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo: The Operating System Version.
mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: Optional information about the version.
mOsVersion - Variable in class edu.isi.pegasus.planner.dax.Executable: OS version the executable is compiled for
mOutputDir - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The output directory where to generate the ploticus output.
mOutputDir - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The output directory where to generate the ploticus output.
mOutputDir - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: The output directory where to generate the ploticus output.
mOutputFile - Variable in class edu.isi.pegasus.planner.client.RankDAX: The output file that lists the daxes in sorted order.
mOutputFile - Variable in class edu.isi.pegasus.planner.client.SCClient: The output file that is written out.
mOutputFile - Variable in class edu.isi.pegasus.planner.client.TCConverter: The output file that is written out.
mOutputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient: The output format for the site catalog.
mOutputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter: The output format for the transformation catalog.
mOutputPool - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The output pool on which the data products are needed to be transferred to.
mOutputPool - Static variable in class edu.isi.pegasus.planner.refiner.Engine: The pool on which all the output data should be transferred.
mOutStream - Variable in class edu.isi.pegasus.common.logging.logger.Default: The stream to which one writes.
moveLeft(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node: Redistribute this task to the earlier time.
moveRight(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node: Redistribute this task to the later time.
mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The list of parents of a node referred to by mCurrentChildId.
mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3: List of parents for a child node in the graph
mParents - Variable in class edu.isi.pegasus.planner.parser.PDAXParser: List of parents for a particular child.
mParents - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode: The list of parents of the job/node in the abstract graph.
mParentsMap - Variable in class edu.isi.pegasus.planner.partitioner.Partition: A map containing a node and it's parents ids in the partition.
mParseKickstart - Variable in class edu.isi.pegasus.planner.visualize.KickstartParser: The parser class that is used to parse a kickstart record and return the invocation record.
mParser - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3: The handle to parser instance that will parse the site catalog.
mParser - Variable in class edu.isi.pegasus.planner.parser.Parser: The object which is used to parse the dax.
mParsingDone - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: A boolean indicating that parsing is done.
mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: The ADAG object containing the partitioned dax.
mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: The ADAG object containing the partitioned dax.
mPartition - Variable in class edu.isi.pegasus.planner.parser.PDAXParser: The object holding the contents of one partition as indicated in the pdax.
mPartition - Variable in class edu.isi.pegasus.planner.partitioner.Topological: The partition that has to be sorted.
mPartitionClusterMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract: A Map that indexes the partition ID to the name of clustered job.
mPartitionerTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory: The table that maps clustering technique to a partitioner.
mPartitionID - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: The value for the partition key.
mPartitioningStarted - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: A boolean indicating that the partitioning has started.
mPartitioningType - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: Stores the type of partitioning to be done.
mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal: A map indexed by the partition ID.
mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Label: A map indexed by the label.
mPartitionName - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter: The name of the partition dax that are generated.
mPassword - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the MySQL password
mPatchVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion: This variable defines the patch version number.
mPatchVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Stores the major version of the planner.
mPattern - Static variable in class edu.isi.pegasus.common.util.CondorVersion: Stores compiled patterns at first use, quasi-Singleton.
mPattern - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter: Stores compiled patterns at first use, quasi-Singleton.
mPattern - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter: Stores compiled patterns at first use, quasi-Singleton.
mPattern - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter: Stores compiled patterns at first use, quasi-Singleton.
mPattern - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Stores compiled patterns at first use, quasi-Singleton.
mPattern - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: The compiled regex expression
mPattern - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter: Stores compiled patterns at first use, quasi-Singleton.
mPDAX - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: The path to the PDAX file written out.
mPDAXDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The directory in which the daxes corresponding to the partitions are kept.
mPDAXDirectory - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter: The directory in which the daxes corresponding to the partition are generated.
mPDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The path to the pdax file that contains the partition graph.
mPDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: The handle to the partition graph writer.
mPegasusHome - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The value of the PEGASUS_HOME environment variable.
mPegasusLiteEnabled - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor: A boolean indicating whether pegasus lite mode is picked up or not.
mPegasusLiteLocalWrapper - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor: Path to Pegasus Lite local wrapper script.
mPegasusPlanOptions - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The object containing all the options passed to the Concrete Planner.
mPegasusPlanOptions - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: The object containing all the options passed to the Concrete Planner.
mPegasusProfilesInProperties - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Pegasus Profiles specified in the properties.
mPFN - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The physical path on the resource for a particular arch, os and type.
mPFNList - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation: A list of ReplicaCatalogEntry objects containing the PFN's and associated attributes.
mPFNs - Variable in class edu.isi.pegasus.planner.dax.CatalogType
MPI_EXEC_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory: The name of the class in this package, that corresponds to mpiexec.
MPIExec - Class in edu.isi.pegasus.planner.cluster.aggregator: This class aggregates the smaller jobs in a manner such that they are launched at remote end, by mpiexec on n nodes where n is the nodecount associated with the aggregated job that is being lauched by mpiexec.
MPIExec() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.MPIExec: The default constructor.
mPlannerMajorMinorVersion - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The major minor version that is used to construct the URL for the pegasus website.
mPlannerOptions - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
mPlannerOptions - Variable in class edu.isi.pegasus.planner.client.RankDAX: The options to be passed ahead to pegasus plan.
mPlannerOpts - Variable in class edu.isi.pegasus.planner.common.UserOptions: The object containing all the user options.
mPMetrics - Variable in class edu.isi.pegasus.planner.client.CPlanner: The PlannerMetrics object storing the metrics about this planning instance.
mPool - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest: The pool id at of the pool which the resource is .
mPool - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: The remote pool for which these transfers are grouped.
mPoolClass - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Specifies the implementing class for the pool interface.
mPoolConfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract: Handle to the PoolConfig object
mPoolFile - Variable in class edu.isi.pegasus.planner.refiner.Engine: The path to the file containing the pool information.
mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Text: The internal singleton handle.
mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
mPoolProvider - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: The path to the pool information provider.
mPOptions - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The options passed to the planner.
mPOptions - Variable in class edu.isi.pegasus.planner.client.CPlanner: The object containing all the options passed to the Concrete Planner.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Abstract: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Braindump: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Metrics: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The object containing the command line options specified to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The options passed to the planner.
mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The options passed to the planner.
mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The options passed to the planner.
mPOptions - Static variable in class edu.isi.pegasus.planner.common.UserOptions: The object holding the Singleton instance.
mPOptions - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The object containing the options that were given to the concrete planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.refiner.Engine: Contains the various options to the Planner as passed by the user at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The options passed to the planner at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: Contains the various options to the Planner as passed by the user at runtime.
mPOptions - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor: The handle to the planner options.
mPosition - Variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException: Remembers the position that cause the exception to be thrown.
mPostScriptDebug - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: A boolean indicating whether to turn the debug on for the postscript or not.
mPOSTScriptImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: A table that maps short names of POSTScript implementations with the implementations themselves.
mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The path to the user postscript on the submit host.
mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: The path to the user postscript on the submit host.
mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The path to the properties file created in submit directory.
mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The properties that need to be passed to the postscript invocation on the command line in the java format.
mPPS - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: The handle to the provenance store implementation.
mPPS - Variable in class edu.isi.pegasus.planner.transfer.refiner.Default: The handle to the provenance store implementation.
mPreferredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted: A Map indexed by site handles, that contains a set of site handles.
mPreviousToken - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner: Captures the previous token.
mProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site: A list of processors making up the site.
mProfileKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: For holding the key attribute in profile tag.
mProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue: The pegasus profile key to use for lookup
mProfileList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The list of Profile objects that contain the profile information associated with the remote site.
mProfileMap - Variable in class edu.isi.pegasus.planner.catalog.classes.Profiles: An enum map that associates the enum keys with the corresponding namespace objects.
mProfileMap - Variable in class edu.isi.pegasus.planner.namespace.Namespace: The Map object that contains the profiles for a particular namespace.
mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: The profiles associated with the FileSystem.
mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: The profiles associated with the headnode filesystem.
mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The profiles asscociated with the site.
mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: The profiles associated with the headnode filesystem.
mProfiles - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The profiles associated with the site.
mProfiles - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: Profiles that are specified in the properties
mProfiles - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mProfiles - Variable in class edu.isi.pegasus.planner.dax.CatalogType
mProfiles - Variable in class edu.isi.pegasus.planner.dax.PFN
mProfileTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Set as and when Profile and Argument tags are started and ended.
mProgram - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: The name of the program.
mProgram - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent: The name of the program.
mProgram - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent: The name of the program.
mPrompt - Variable in class edu.isi.pegasus.common.util.StreamGobbler: The prompt that is to be written to the output stream.
mProperties - Variable in class edu.isi.pegasus.common.logging.logger.Log4j: The properties passed at runtime
mProperties - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The properties container for properties specified on the commandline in the DAX dax elements.
mPropertiesFilename - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
mPropertiesPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The pointer to the properties file that was used.
mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: An internal table that maps remote transfer type to the corresponding property.
mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.TPT: An internal table that maps third party transfer type to the corresponding property.
mProps - Variable in class edu.isi.pegasus.common.credential.impl.Abstract: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Handle to Pegasus Properties
mProps - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the PegasusProperties.
mProps - Variable in class edu.isi.pegasus.planner.client.Executable: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.cluster.Abstract: The handle to the properties object holding all the properties.
mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory: The handle to the properties object holding all the properties.
mProps - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: The handle to the properties object holding all the properties.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.Abstract: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.Braindump: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The handle to Pegasus Properties.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.Metrics: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: The properties object holding all the properties.
mProps - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The object holding all the properties pertaining to the VDS system.
mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.parser.Parser: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The handle to the properties file.
mProps - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback: The handle to the properties object.
mProps - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: The handle to Pegasus Properties.
mProps - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback: Handle to the properties available.
mProps - Variable in class edu.isi.pegasus.planner.ranking.GetDAX: The properties passed to the client.
mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The handle to the properties passed to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The handle to the properties passed to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: The handle to the properties passed to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The handle to the pegasus properties.
mProps - Variable in class edu.isi.pegasus.planner.refiner.Engine: The object holding all the properties pertaining to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Default: The properties object containing the properties passed to the planner.
mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Local: The properties object containing the properties passed to the planner.
mProps - Variable in class edu.isi.pegasus.planner.selector.site.Abstract: The properties passed to Pegasus at runtime.
mProps - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The handle to the properties.
mProps - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The handle to the properties object holding the properties relevant to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The handle to the properties object holding the properties relevant to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The handle to the properties object holding the properties relevant to Pegasus.
mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor: The handle to the properties.
mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The handle to the properties.
mProps - Variable in class edu.isi.pegasus.planner.transfer.TPT: The handle to the properties object holding the properties relevant to Pegasus.
mPropsInSubmitDir - Variable in class edu.isi.pegasus.planner.common.PegasusProperties: The pointer to the properties file that is written out in the submit directory.
mProtocol - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: The protocol used by the file server.
mQueue - Variable in class edu.isi.pegasus.planner.partitioner.BFS: The first in first out queue, that manages the set of gray vertices in a breadth first search.
mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator: The first in first out queue, that manages the set of gray vertices in a breadth first search.
mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator: The internal list of nodes that contains the nodes to be traversed.
mQueue - Variable in class edu.isi.pegasus.planner.partitioner.Label: The first in first out queue, that manages the set of gray vertices in a breadth first search.
mRandom - Static variable in class edu.isi.pegasus.planner.common.PegRandom: The object containing the instance of the java.util.Random class.
mRandomDirName - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: If the genRandomDir flag is set, then this contains the name of the random directory.
mRank - Variable in class edu.isi.pegasus.planner.ranking.Ranking: Rank of the dax.
mRank - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank: The rank value.
MRC - Class in edu.isi.pegasus.planner.catalog.replica.impl: A multiple replica catalog implementation that allows users to query different multiple catalogs at the same time.
MRC() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.MRC: The default constructor.
mRCB - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The handle to the replica catalog bridge.
mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The bridge to the Replica Catalog.
mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The bridge to the Replica Catalog.
mRCDown - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: A boolean variable to desingnate whether the RLI queried was down or not.
mRCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the replica catalog.
mRCList - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC: The list of replica catalogs that need to be queried for.
mRedEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The handle to the Reduction Engine that performs reduction on the graph.
mReducedDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The reduced Dag object which is got from the Reduction Engine.
mReducedDag - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: the reduced dag object which is returned.
mRefiner - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The handle to the refiner that loaded this implementation.
mRegexExpression - Static variable in class edu.isi.pegasus.common.util.CondorVersion: Store the regular expressions necessary to parse the output of condor_version.
mRegexExpression - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter: Store the regular expressions necessary to parse kickstart output files
mRegexExpression - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Store the regular expressions necessary to match the * properties.
mRegexExpression - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter: Store the regular expressions necessary to parse kickstart output files
mRegexExpression - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter: Store the regular expressions necessary to parse kickstart output files
mRegexExpression - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Store the regular expressions necessary to parse the basename from the worker package url to retrieve the version of pegasus.
mRegexExpression - Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.KickstartOutputFilenameFilter: Store the regular expressions necessary to parse kickstart output files
mRegFiles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The collection of FileTransfer objects containing the files that need to be registered.
mRegister - Variable in class edu.isi.pegasus.planner.dax.File: Should the file be registered in the replica catalog
mRegName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The name of the registration job.
mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook: A map containing the relations between the jobs making up the partition.
mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook: A map containing the relations between the jobs making up the partition.
mRelationsMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The map indexed by compute jobnames that contains the list of stagin job names that are being added during the traversal of the workflow.
mRelativeDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The relative directory for the submit directory and remote execution directory
mRelativeSubmitDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The relative directory for the submit directory.
mRelativeSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The relative submit directory for this run.
mRemoteTransfers - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The handle to the Remote Transfers State machinery.
mRemoveEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The engine that ends up creating the cleanup dag for the dag.
mReplacementTable - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: Replacement table, that identifies the corresponding fat job for a job.
mReplicaCatalog - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The handle to the main Replica Catalog.
mReplicaCatalogs - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The list of replica catalog associated with the site.
mReplicaSelector - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The handle to the replica selector that is to used to select the various replicas.
mReplicaStore - Variable in class edu.isi.pegasus.planner.classes.ADag: Handle to the replica store that stores the replica catalog user specifies in the DAX
mReplicaStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Handle to the replica store that stores the replica catalog user specifies in the DAX
mReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The replica store in which we store all the results that are queried from the main replica catalog.
mRequestID - Variable in class edu.isi.pegasus.planner.classes.ADag: The optional request ID associated with the DAX.
mRequestID - Variable in class edu.isi.pegasus.planner.client.RankDAX: The request id to get the daxes.
mRequestID - Variable in class edu.isi.pegasus.planner.ranking.Rank: The optional request id.
mRequestID - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The request id associated with the DAX.
mResMap - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The mapping to siteHandle to all the jobs that are mapped to it mapping to siteHandle(String) to Set
mResMapLeaves - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The mapping of siteHandle to all subset of the jobs mapped to it that are leaves in the workflow mapping to siteHandle(String) to Set.
mResMapRoots - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace: The mapping of siteHandle to all subset of the jobs mapped to it that are leaves in the workflow mapping to siteHandle(String) to Set.
mResourceContact - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest: The contact string to the resource.
mResourceID - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The Id of the resource on which the transformation is installed.
mResult - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser: The final result constructed.
mRLIUrl - Variable in class edu.isi.pegasus.planner.refiner.Engine: The Replica Location Index URL got from vds.rls.url property
mRoot - Static variable in class edu.isi.pegasus.common.logging.logger.Log4j: Keeps track of log4j's root logger as singleton.
mRoot - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph: The root node for the graph that is constructed.
mRoot - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner: The root node of the graph from where to start the BFS.
mRootWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag: The Root Workflow UUID.
mRunningJobs - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The number of jobs in the remote queue that are running at the remote site.
mRuntime - Variable in class edu.isi.pegasus.planner.classes.Job: The expected runtime for a job.
mRuntime - Variable in class edu.isi.pegasus.planner.ranking.Ranking: The runtime of the dax in seconds.
mSanitizePath - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: A boolean storing whether to sanitize paths or not
mScanner - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser: The access to the lexical scanner is stored here.
mSCFile - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
mSCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the site catalog.
mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Abstract: ADag object containing the jobs that have been scheduled by the site selector.
mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: ADag object containing the jobs that have been scheduled by the site selector.
mScheduledSite - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The site where a job is scheduled to run.
mScheduler - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The scheduler type with which it interfaces.
mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: The scratch area on the head node.
mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: The scratch area on the head node.
mSearchFiles - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: The Vector of String objects containing the logical filenames of the files whose locations are to be searched in the Replica Catalog.
mSelector - Variable in class edu.isi.pegasus.planner.selector.site.Group: The handle to the internal site selector that is used to schedule jobs amongst the groups.
mSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The nice separator, define once, use often.
mSeparator - Static variable in interface edu.isi.pegasus.planner.code.GridStart: The File separator to be used on the submit host.
mSeparator - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The file Separator to be used on the submit host.
mSeqExecGridStartUsed - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: Boolean to track whether the gridstart used in PegasusLite or not
mSetupMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The map indexed by staged executable logical name.
mSetupTransferImplementation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The transfer implementation to be used for staging in the data as part of setup job.
mSetXBit - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Whether kickstart should set the X Bit on the staged executables.
MSG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
MSG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
mSharedDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType: The shared directory on the node.
mSIBundleMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain: The map containing the stage in bundle values indexed by the name of the site.
mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory: Holds a singleton instance that is populated via the loadSingletonInstance() method.
mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory: Holds a singleton instance that is populated via the loadSingletonInstance() method.
mSite - Variable in class edu.isi.pegasus.planner.dax.PFN
mSite - Variable in class edu.isi.pegasus.planner.provenance.NetloggerCallback: The logical site where the job was run.
mSite - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer: The site for which these transfers are grouped.
mSite - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The logical site where the job was run.
mSite - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: The logical site where the job was run.
mSiteCatalog - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig: The map indexed by the site handle.
mSiteMap - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Map containing the number of free nodes for each site.
mSites - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: The set of sites that need to be parsed.
mSites - Variable in class edu.isi.pegasus.planner.client.RankDAX: The list of grid sites where the daxes can run.
mSites - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser: The set of sites that need to be parsed.
mSites - Variable in class edu.isi.pegasus.planner.ranking.Rank: The list of candidate grid sites.
mSites - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The list of sites where the workflow can run.
mSiteSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: Handle to the site selector.
mSiteSelectorPath - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The path to the site selector.
mSiteStore - Variable in class edu.isi.pegasus.common.credential.impl.Abstract: The handle to the Site Catalog Store.
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The SiteStore object where information about the sites is stored.
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The SiteStore object where information about the sites is stored.
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The SiteStore object where information about the sites is stored.
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML: Stores sites in memory
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML3: Stores sites in memory
mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper: The handle to the RIC.
mSiteStore - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The site store containing the sites that need to be used.
mSiteStore - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: Handle to the site catalog store
mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The handle to the site catalog store.
mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract: The handle to the Site Catalog Store.
mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.Shell: Handle to the Site Store.
mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Handle to the site catalog store.
mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Handle to the site catalog store.
mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Handle to the site catalog store.
mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Handle to the stagingSite catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: Handle to the site catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: The Site Store handle.
mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The handle to the SiteStore.
mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.Engine: The handle to the Pool Info Provider.
mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.Abstract: The handle to the site catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Handle to the site catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The handle to the Pool Info Provider.
mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: Handle to the SiteStore
mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain: The handle to the Site Catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor: The handle to the site catalog.
mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The handle to the site catalog.
mSiteToPegasusHomeMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Maps a site to the the directory where the pegasus worker package has been untarred during workflow execution.
mSize - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: The size of the file.
mSize - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: The initial size of the buffer.
mSize - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: The size.
mSizeUnits - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The size units.
mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The handle to the SLS implementor
mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The handle to the SLS implementor
mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The handle to the SLS implementor
mSLS - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: The handle to the SLS implementor
mSLS - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The handle to the SLS implementor
mSortedRegexSet - Variable in class edu.isi.pegasus.planner.selector.replica.Regex: The Set of regular expressions that orders the regex expressions to use in ascending order.
mSource - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites: The default source to query for generating a site catalog.
mSourceMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer: The map containing all the source urls keyed by the pool id/name.
mSpaceList - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace: The list of Space reading objects.
mSpaceStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: The SpaceUsage object created during the callback construction.
mSRMServiceURLToMountPointMap - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: A map that associates the site name with the SRM server url and mount point.
mStack - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter: The Stack of event objects maintained internally
mStack - Variable in class edu.isi.pegasus.common.util.XMLWriter
mStack - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser: The stack of objects kept around.
mStageinLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The BundleValue that evaluates for local stage in jobs.
mStageInLocalMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
mStageInLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: A map indexed by site name, that contains the pointer to the stage in PoolTransfer objects for that site.
mStageInMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain: A map indexed by execution sites.
mStageInRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The BundleValue that evaluates for remote stage-in jobs.
mStageInRemoteMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
mStageInRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: A map indexed by site name, that contains the pointer to the symlink stage in PoolTransfer objects for that site.
mStageOutBaseDirectory - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The base path for the stageout directory on the output site where all the files are staged out.
mStageOutLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The BundleValue that evaluates for local stage out jobs.
mStageOutLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: A map indexed by site name, that contains the pointer to the local stage out PoolTransfer objects for that site.
mStageOutRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: The BundleValue that evaluates for remote stage out jobs.
mStageOutRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle: A map indexed by site name, that contains the pointer to the remote stage out PoolTransfer objects for that site.
mStageSLSFile - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Boolean to track whether to stage sls file or not
mStageSLSFile - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: Boolean to track whether to stage sls file or not
mStagingSite - Variable in class edu.isi.pegasus.planner.classes.Job: The staging site associated with the job
mStagingSitesMap - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: A map that maps an execution site to a staging site.
mStarReplacements - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: Replacement 2 D Array for the above properties.
mStarted - Variable in class edu.isi.pegasus.common.util.StreamGobbler: A boolean indicating whether the thread has started or not.
mStartSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork: The nice start separator, define once, use often.
mStartTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The start time for hte planning.
mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The estimated start time for a job.
mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor: The start time of the current scheduled job.
mState - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState: Stores the state as an integer.
mState - Variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState: Stores the state as an integer.
mStateMap - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer: The map indexed by site name, that contains the state for all the sites.
mStateMap - Variable in class edu.isi.pegasus.planner.transfer.TPT: The map indexed by site name, that contains the state for all the sites.
mStatements - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC: Maintains an essential set of prepared statement, ready to use.
mStatements - Variable in class edu.isi.pegasus.planner.catalog.work.Database: Maintains an essential set of prepared statement, ready to use.
mStatements - Variable in class edu.isi.pegasus.planner.ranking.GetDAX: Maintains an essential set of prepared statement, ready to use.
mStderr - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mStdin - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mStdout - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS: The storage area on the head node.
mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS: The storage area on the head node.
mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: This contains the storage directory relative to the se mount point of the pool.
mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The storage mount point for the grid ftp server.
mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: This contains the storage directory relative to the se mount point of the pool.
mStorageDir - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: This contains the storage directory relative to the se mount point of the pool.
mStore - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: The internal map that maps a site catalog entry to the site handle.
mStore - Variable in class edu.isi.pegasus.planner.classes.ReplicaStore: The replica store.
mStore - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph: The map indexed by the id of the GraphNode, used for storing the nodes of the Graph.
mStore - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory: The StringBuffer store.
mStore - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage: The map that stores the list of space objects indexed by site name.
mStore - Variable in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements: The map that stores the list of Measurement indexed by site name.
mStyleFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Handle to the Style factory, that is used for this workflow.
mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract: A Map to store all the job(Job) objects indexed by their logical ID found in the dax.
mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: A Map to store all the job(Job) objects indexed by their logical ID found in the dax.
mSubmit - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: If specified, then it submits to the underlying CondorG using the kickstart-Condorscript provided.
mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: The submit exectionSiteDirectory where the submit files are being generated for the workflow.
mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: The submit directory where the submit files are being generated for the workflow.
mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: The submit directory where the submit files are being generated for the workflow.
mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript: The submit directory where the submit files are being generated for the workflow.
mSubmitDir - Variable in class edu.isi.pegasus.planner.code.GridStartFactory: The submit directory where the submit files are being generated for the workflow.
mSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.ADag: The root of the submit directory hierarchy for the DAG.
mSubmitDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The root of the submit directory where all the submit directories for the various partitions reside.
mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The submit directory where the output files have to be written.
mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: The submit directory for the workflow.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Abstract: The directory where all the submit files are to be generated.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Braindump: The directory where all the submit files are to be generated.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore: The directory where all the submit files are to be generated.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Metrics: The directory where all the submit files are to be generated.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify: The directory where all the submit files are to be generated.
mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Stampede: The directory where all the submit files are to be generated.
mSymbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord: Singleton implementation of a symbol table for reserved words.
mSyncJobMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster: Maps the site name to the current synch job
mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The System Information for the Site.
mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: The system information of the remote site.
mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The System Info for the transformation.
mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The path to the file based TC.
mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: The path to the file based TC.
mTCFile - Variable in class edu.isi.pegasus.planner.refiner.Engine: The path to the file containing the pool information.
mTCFileHandle - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The singleton handler to the contents of the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper: The handle to the tranformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: Handle to the Transformation Catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The handle to the transformation catalog
mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Handle to Transformation Catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Handle to Transformation Catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.Engine: The handle to the Transformation Catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The handle to the transformation catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract: The handle to the Transformation Catalog.
mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The handle to the transformation catalog.
mTCMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper: Handle to the TCMap
mTCMap - Variable in class edu.isi.pegasus.planner.classes.TCMap: The TCMap for a dag is stored in this HashMap.
mTCMapper - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The handle to the Transformation Mapper.
mTCMapper - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: The handle to the transformation catalog mapper object that caches the queries to the transformation catalog, and indexes them according to lfn's.
mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.Abstract: The handle to the TCMapper object.
mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: Handle to the TCMapper.
mTCMode - Variable in class edu.isi.pegasus.planner.refiner.Engine: Defines the read mode for transformation catalog.
mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore: The internal store map.
mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: The transformation store containing the transformations after parsing the file.
mTempLogFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator: The name of the log file in the /tmp directory
mTextContent - Variable in class edu.isi.pegasus.planner.parser.Parser: Holds the text in an element (text between start and final tags if any).
mTextParser - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text: Instance to the TextParser.
mTextString - Variable in class edu.isi.pegasus.planner.parser.Parser: A String that holds the contents of data passed as text.
mTimeList - Variable in class edu.isi.pegasus.planner.visualize.JobMeasurements: The corresponding list of Date objects signifying the times at which an event happened.
mTimeout - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout: The timeout value in seconds after which to timeout, in the case where the external site selector does nothing (nothing on stdout nor stderr).
mTimeUnits - Variable in class edu.isi.pegasus.planner.client.PlotNodeUsage: The time units.
mTimeUnits - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The time units.
mTimeUnits - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: The time units.
mTimeUnits - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: The time units.
mTimingSource - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: The timing source used to order the events.
mTopNum - Variable in class edu.isi.pegasus.planner.client.RankDAX: The top n workflows to execute and put in the rankings file
mTotalMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The total memory that the jobmanager reports.
mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The number of total nodes
mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The total number of nodes that the jobmanager reports are on the remote site.
mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType: The total size of file system.
mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The total storage space at the grid ftp server.
mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir: The total space available at the file system under this directory.
mTPT - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The handle to the Third Party State machinery.
mTransEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine: The handle to the Transfer Engine that adds the transfer nodes in the graph to transfer the files from one site to another.
mTransfer - Variable in class edu.isi.pegasus.planner.dax.File: Should the file be transferred on generation.
mTransferFlag - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: The transfer flag associated with the file containing tristate of transfer,dontTransfer and optional.
mTransferFromSubmitHost - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory: Boolean indicating whether we need to transfer dirmanager from the submit host.
mTransferType - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The type of the transfers the job is responsible for.
mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: Boolean indicating whether worker package transfer is enabled or not
mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Boolean indicating whether user wants the worker package to be transferred or not.
mTransformations - Variable in class edu.isi.pegasus.planner.dax.ADAG: The List of Transformation objects
mTransformationStore - Variable in class edu.isi.pegasus.planner.classes.ADag: Handle to the transformation store that stores the transformation catalog user specifies in the DAX
mTransformationStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Handle to the transformation store that stores the transformation catalog user specifies in the DAX
mTransientRC - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: The transient replica catalog that tracks the files created or transferred during the workflow
mTransientRC - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup: Handle to the transient replica catalog.
mTransientRC - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: A SimpleFile Replica Catalog, that tracks all the files that are being materialized as part of workflow executaion.
mTransientRC - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer: The handle to the transient replica catalog.
mTreatCacheAsRC - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge: A boolean indicating whether the cache file needs to be treated as a replica catalog or not.
mTreeMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The Tree Map which stores the contents of the file.
mTXContainers - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer: The list of TransferContainer that correspond to each transfer job.
mTXFERImplTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: An internal table that resolves the old transfer mode property, to the corresponding transfer implementation.
mTXFERRefinerTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: An internal table that resolves the old transfer mode property, to the corresponding transfer refiner.
mTXInterImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The inter transfer implementation that the refiner requires.
mTXName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer: The name of the transfer job.
mTXRefiner - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The handle to the transfer refiner that adds the transfer nodes into the workflow.
mTXSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: The handle to the transformation selector, that ends up selecting what transformations to pick up.
mTXStageInImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The stage-in transfer implementation that the refiner requires.
mTXStageOutImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The stage-out transfer implementation that the refiner requires.
mTXSymbolicLinkImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The stage-in symbolic link transfer implementation that refiner requires.
mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway: The grid type associated with this instance.
mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: The type of the replica catalog implementation to use.
mType - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest: Specifies what type of resource you are authenticating to.
mType - Variable in class edu.isi.pegasus.planner.classes.PegasusFile: The type associated with the file.
mType - Variable in class edu.isi.pegasus.planner.client.PartitionDAX: The type of the partitioner to be used.
mType - Variable in class edu.isi.pegasus.planner.dax.MetaData: Metadata type
MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode: Constants for multiple read.
MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
MultipleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer: An empty interface, that allows for grouping of implementations that can handle multiple file transfers per transfer job like old guc and Stork.
MultipleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer: The refiner interface, that determines the functions that need to be implemented to add various types of transfer nodes to the workflow.
MultipleFTPerXFERJobRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner: The overloaded constructor.
MultipleLook - Class in edu.isi.pegasus.planner.partitioner: This class ends up writing a partitioned dax, that corresponds to one partition as defined by the Partitioner.
MultipleLook(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook: The overloaded constructor.
MultipleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner: The internal callback handler for the DAXParser in Euryale.
MultipleLook.MyCallBackHandler() - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler: The empty constructor.
mUnit - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Space: The units in which the size is stored.
mUniverse - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The VDS universe with which the jobmanager is associated with.
mUpwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag: The upward rank for a node.
mURL - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog: The url for the catalog.
mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer: The url string of the gridftp that contains the host and the port.
mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager: The url to the jobmanager on the remote site.
mUrl - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the database url
mURL - Variable in class edu.isi.pegasus.planner.dax.PFN
mURLPrefix - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType: The URL prefix for the server.
mUseDoubleNegative - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: A boolean indicating whether to use the double negative flags for transfer and register or not.
mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC: Whether to use force option for the transfer executable or not.
mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2: Whether to use force option for the transfer executable or not.
mUseFullPathToGridStart - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: Boolean indicating whether to use full path or not
mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy: Whether we want to use dirmanager or mkdir directly.
mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation: Whether we want to use dirmanager or mkdir directly.
mUser - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The user who planned the workflow.
mUser - Variable in class edu.isi.pegasus.planner.client.CPlanner: The user name of the user running Pegasus.
mUser - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator: The username of the user running the program.
mUser - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG: The user name of the user running Pegasus.
mUser - Variable in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan: The username of the user running the program.
mUsername - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase: Stores the user name
mUserOpts - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: Handle to the Singleton instance containing the options passed to the planner at run time.
mUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: The user specified location from where to stage the worker packages.
mUses - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation: The list of dependant executables
mUses - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mUses - Variable in class edu.isi.pegasus.planner.dax.Transformation: List of executable of files used by the transformation
mUsesLinkType - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The uses link type for a file when uses tag is parsed.
mUsesPegasusFile - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: The PegasusFile object that a uses tag corresponds to.
mUseStatInfo - Variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage: A boolean indicating to use stat information for estimating directory sizes.
mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus: A boolean indicating whether to use stat info or not.
mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus: A boolean indicating whether to use stat info or not.
mUseStatInfo - Variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback: Boolean indicating whether to use stat data or not for computing directory sizes.
mUseSymLinks - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: This member variable if set causes the source url for the pull nodes from the RLS to have file:// url if the pool attributed associated with the pfn is same as a particular jobs execution pool.
mUseUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Boolean indicating whether to use the user specified location or not
mValue - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection: The value of the connection key.
mValue - Variable in class edu.isi.pegasus.planner.classes.Profile
mValue - Variable in class edu.isi.pegasus.planner.dax.MetaData: Metadata value
mValue - Variable in class edu.isi.pegasus.planner.dax.Profile: Value of the profile
mValue - Variable in class edu.isi.pegasus.planner.invocation.Boot: The text value
mValue - Variable in class edu.isi.pegasus.planner.invocation.CPU: The text value
mValue - Variable in class edu.isi.pegasus.planner.invocation.Stamp: The text value
mValue - Variable in class edu.isi.pegasus.planner.invocation.Uname: The text value
mValue - Variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord: This instance variable captures the token value for the reserved word.
mValue - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag: The value for the Label.
mVDSArchToNMIArch - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI: The map storing architecture to corresponding NMI architecture platforms.
mVDSOSToNMIOS - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI: The map storing OS to corresponding NMI OS platforms.
mVDSProps - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The list of VDS properties set at runtime by the user on commandline.
mVDSToPegasusPropertiesTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties: The handle to the internal map, that maps vds properties to pegasus properties.
mVersion - Variable in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback: The version detected.
mVersion - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry: The mVersion of the transformation.
mVersion - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation: The version
mVersion - Variable in class edu.isi.pegasus.planner.client.Executable: It stores the verison of the Griphyn Virtual Data System software.
mVersion - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
mVersion - Variable in class edu.isi.pegasus.planner.dax.Executable: Version of the executable
mVersion - Variable in class edu.isi.pegasus.planner.dax.File: The logical version of the file.
mVersion - Variable in class edu.isi.pegasus.planner.dax.Transformation: Version of the transformation
mVersionPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
mvExecPools - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File: The List containing the user specified list of pools on which he wants the dag to run.
mvExecPools - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: List of execution pools on which the user wants the Dag to be executed.
mVJobInpFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Holds the input files for a particular job making the aDag.
mVJobOutFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: Holds the output files for a particular job making the aDag.
mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The vo for which to query MYOSG
mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM: The VO to which the user belongs to.
mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The VO to which the user belongs to.
mVO - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The VOGroup to which the user belonged to.
mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions: The VOGroup to which the user belongs to.
mVOInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS
mVORSHost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The mVORSHost where VORS is running.
mVORSPort - Variable in class edu.isi.pegasus.planner.catalog.site.impl.VORS: The VORS mVORSPort.
mVSubInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG: Contains Job objects.
mWFMeasurements - Variable in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback: The WorkflowMeasurements object created during the callback construction.
mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.DagInfo: The workflow metric objects that contains metrics about the workflow being planned.
mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics: The metrics about the workflow.
mWhat - Variable in class edu.isi.pegasus.planner.dax.Invoke: What to invoke
mWhen - Variable in class edu.isi.pegasus.planner.dax.Invoke: WHen to Invoke
mWholeCommandString - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2: All the arguments to a particular job.
mWord - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback: The word that is to be searched for.
mWordLength - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback: The length of the word to be searched for.
mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore: The work dir path from the properties.
mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo: Contains the information about the work directory on the remote site.
mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir: The path to the work directory.
mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider: The working directory relative to the mount point of the execution pool.
mWorkDir - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: The working directory relative to the mount point of the execution pool.
mWorkerFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry: The handle to the worker node filesystem.
mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart: A boolean indicating whether to have worker node execution or not.
mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: A boolean indicating whether to have worker node execution or not.
mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage: Boolean indicating worker node execution.
mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: A boolean indicating whether to have worker node execution or not.
mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine: A boolean indicating whether we are doing worker node execution or not.
mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.classes.PegasusBag: Worker Package Map, that indexes execution site with the location of the corresponding worker package in the submit directory
mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite: A map indexed by execution site and the corresponding worker package location in the submit directory
mWorkerPackageStagingEnabled - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart: Boolean indicating whether worker package staging is enabled or not.
mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch: The directory shared only amongst the worker nodes.
mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage: The directory shared only amongst the worker nodes.
mWorkflow - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
mWorkflow - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph: The Graph instance that stores the abstract workflow as a Graph.
mWorkflow - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine: The workflow object being worked upon.
mWorkflow - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: The workflow object being worked upon.
mWorkflow - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm: The workflow in the graph format, that needs to be scheduled.
mWorkflowID - Variable in class edu.isi.pegasus.planner.client.NetloggerExitcode: The workflow id.
mWorkflowID - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript: the workflow id used.
mWorkflowRefinementStarted - Variable in class edu.isi.pegasus.planner.classes.ADag: Boolean indicating whether the refinement process on the workflow has started or not.
mWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag: The UUID associated with the workflow.
mWriteHandle - Variable in class edu.isi.pegasus.planner.code.generator.Shell: The handle to the output file that is being written to.
mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter: The write handle to the xml file being written.
mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter: The write handle to the xml file being written.
mWriteLine - Variable in class edu.isi.pegasus.common.util.XMLWriter
mWriter - Variable in class edu.isi.pegasus.common.util.XMLWriter
mWriter - Variable in class edu.isi.pegasus.planner.dax.ADAG: Handle the XML writer
mXMLStore - Variable in class edu.isi.pegasus.planner.cluster.Horizontal: The XML Producer object that records the actions.
mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine: The XML Producer object that records the actions.
mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine: The XML Producer object that records the actions.
mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.ReductionEngine: The XML Producer object that records the actions.
mXMLStore - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner: The XML Producer object that records the actions.
MYOSG - Class in edu.isi.pegasus.planner.catalog.site.impl: This class implements the SiteCatalog interface
MYOSG() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.MYOSG: The default constructor.
MYOSGSiteCatalogParser - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util: This class uses the Xerces SAX2 parser to validate and parse an XML.
MYOSGSiteCatalogParser() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser: The default Constructor.
MYOSGSiteCatalogParser(List<String>) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
MYOSGSiteCatalogParser(PegasusProperties, List<String>) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
MYOSGSiteCatalogUtil - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util: Utility class for converting the Facade object to SiteCatalogEntry object
MYOSGSiteCatalogUtil() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogUtil
MYOSGSiteConstants - Interface in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
MYOSGSiteEnvironmentInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class extends AbstractSiteCatalogResource and stores MYOSG Site Environment Information
MYOSGSiteEnvironmentInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
MYOSGSiteInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class extends AbstractSiteCatalogResource and stores MYOSG Site Information
MYOSGSiteInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
myOsgSiteInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
MYOSGSiteInfoFacade - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes
MYOSGSiteInfoFacade(MYOSGSiteInfo) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
MYOSGSiteResourceInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class extends AbstractSiteCatalogResource and stores MYOSG Site resource Information
MYOSGSiteResourceInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
MYOSGSiteServiceInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class extends AbstractSiteCatalogResource and stores MYOSG Site service Information
MYOSGSiteServiceInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
MYOSGSiteVOOwnershipInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.classes: This class extends AbstractSiteCatalogResource and stores MYOSG Site service Information
MYOSGSiteVOOwnershipInfo(int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
MYOSGURLGenerator - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util: This is an utility class which generates the MYOSG url.
MYOSGURLGenerator() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGURLGenerator
myquote(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture: Quotes an input string for XML attributes while converting nulls.




N

NAME - 
Static variable in class edu.isi.pegasus.common.util.Separator
This constant defines the separator between an identifier and
 its version.
Name - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
name - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
name - 
Variable in class edu.isi.pegasus.planner.classes.NameValue
stores the name of the pair.
name - 
Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
Stores the name of the pair (the left handside of the mapping).
nameOfADag - 
Variable in class edu.isi.pegasus.planner.classes.DagInfo
The name of the Abstract Dag taken from the adag element of the DAX
 generated by the Abstract Planner.
NAMESPACE - 
Static variable in class edu.isi.pegasus.common.util.Separator
This constant defines the separator between a namespace and
 the identifier.
namespace - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
namespace - 
Variable in class edu.isi.pegasus.planner.classes.Job
The namespace to which the transformation is bound.
NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
The namespace to which the job in the MEGA DAG being created refer to.
Namespace - Class in edu.isi.pegasus.planner.namespace
The base namespace class that all the othernamepsace handling classes extend.
Namespace() - 
Constructor for class edu.isi.pegasus.planner.namespace.Namespace
 
NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The namespace to which the job in the MEGA DAG being created refer to.
NAMESPACE - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
A namespace we can use to identify relationships and concepts defined for Pegasus' provenance data
Namespace.EmptyIterator - Class in edu.isi.pegasus.planner.namespace
An empty iterator that allows me to traverse in case of null objects.
Namespace.EmptyIterator() - 
Constructor for class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
 
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.ENV
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Globus
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Hints
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Selector
The name of the namespace that this class implements.
NAMESPACE_NAME - 
Static variable in class edu.isi.pegasus.planner.namespace.Stat
The name of the namespace that this class implements.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Condor
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.ENV
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Globus
Returns the name of the namespace associated with the profile
 implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Hints
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Pegasus
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Selector
Returns the name of the namespace associated with the profile implementations.
namespaceName() - 
Method in class edu.isi.pegasus.planner.namespace.Stat
Returns the name of the namespace associated with the profile implementations.
namespaceToPropertiesPrefix() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
 
namespaceValid(String) - 
Static method in class edu.isi.pegasus.planner.classes.Profile
Returns a boolean indicating whether the namespace is valid or not.
NameValue - Class in edu.isi.pegasus.planner.classes
The object of this class holds the name value pair.
NameValue() - 
Constructor for class edu.isi.pegasus.planner.classes.NameValue
the default constructor  which initialises the class member variables.
NameValue(String, String) - 
Constructor for class edu.isi.pegasus.planner.classes.NameValue
Initialises the class member variables to the values passed in the
 arguments.
nano0 - 
Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
 
needsSLSInputTransfers(Job) - 
Method in class edu.isi.pegasus.planner.transfer.sls.Condor
Returns a boolean indicating whether it will an input file for a job
 to do the transfers.
needsSLSInputTransfers(Job) - 
Method in interface edu.isi.pegasus.planner.transfer.SLS
Returns a boolean indicating whether it will an input file for a job
 to do the transfers.
needsSLSInputTransfers(Job) - 
Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
Returns a boolean indicating whether it will an input file for a job
 to do the transfers.
needsSLSOutputTransfers(Job) - 
Method in class edu.isi.pegasus.planner.transfer.sls.Condor
Returns a boolean indicating whether it will an output file for a job
 to do the transfers.
needsSLSOutputTransfers(Job) - 
Method in interface edu.isi.pegasus.planner.transfer.SLS
Returns a boolean indicating whether it will an output file for a job
 to do the transfers.
needsSLSOutputTransfers(Job) - 
Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
Returns a boolean indicating whether it will an output file for a job
 to do the transfers.
Netlogger - Class in edu.isi.pegasus.common.logging.format
This formatter formats the messages in the netlogger format.
Netlogger() - 
Constructor for class edu.isi.pegasus.common.logging.format.Netlogger
The default constructor.
NETLOGGER_BP_FILE_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The suffix to use while constructing the name of the metrics file
NETLOGGER_LOG_FORMATTER_IMPLEMENTOR - 
Static variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
 
NETLOGGER_LOG_FORMATTER_IMPLEMENTOR - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
 
NetloggerCallback - Class in edu.isi.pegasus.planner.provenance
Implements callback interface to calculate space usage.
NetloggerCallback() - 
Constructor for class edu.isi.pegasus.planner.provenance.NetloggerCallback
The default constructor.
NetloggerEvent - Class in edu.isi.pegasus.common.logging.format
The netlogger event.
NetloggerEvent() - 
Constructor for class edu.isi.pegasus.common.logging.format.NetloggerEvent
The default constructor.
NetloggerExitcode - Class in edu.isi.pegasus.planner.client
This parses the kickstart records and logs via Log4j the kickstart record
 in the Netlogger Format.
NetloggerExitcode() - 
Constructor for class edu.isi.pegasus.planner.client.NetloggerExitcode
Default constructor.
NetloggerJobMapper - Class in edu.isi.pegasus.planner.code.generator
This class can write out the job mappings that link jobs with jobs in the DAX
 to a Writer stream in the netlogger format.
NetloggerJobMapper(LogManager) - 
Constructor for class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
The default constructor.
NetloggerPostScript - Class in edu.isi.pegasus.planner.code.gridstart
This postscript invokes the netlogger-exitcode to parse the kickstart
 output and write out in netlogger format.
NetloggerPostScript() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
The default constructor.
next() - 
Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
Returns a null as we are iterating over nothing.
next() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
Returns the next object in the traversal order.
next() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
Returns the next node to be traversed
nextDouble() - 
Static method in class edu.isi.pegasus.planner.common.PegRandom
Returns a double value between
 0.0 and 1.0.
nextGaussian() - 
Static method in class edu.isi.pegasus.planner.common.PegRandom
Returns a normally distributed (gaussian) random variable between
 0.0 and 1.0.
nextToken() - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
Obtains the next token from the input stream.
nextToken() - 
Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
Obtains the next token from the input stream.
niceString(String) - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
Remove potential leading and trainling quotes from a string.
niceString(String) - 
Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
Remove potential leading and trainling quotes from a string.
NMI2VDSSysInfo - Class in edu.isi.pegasus.planner.catalog.transformation.classes
An Adapter class that translates the new NMI based Architecture and OS
 specifications to VDS ( VDS era ) Arch and Os objects
NMI2VDSSysInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
 
nmiArchToVDSArch(SysInfo.Architecture) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the  the VDS Arch object corresponding to the new
 NMI Architecture object .
nmiArchToVDSArch(String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the VDS Arch object corresponding to the new
 NMI Architecture object .
NMIArchToVDSArchMap() - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Singleton access to the  NMI arch to VDS arch map.
nmiOSToVDSOS(SysInfo.OS) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the VDS Os object corresponding to the new
 NMI OS object .
nmiOSToVDSOS(String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the VDS Os object corresponding to the new
 NMI OS object .
NMIOSToVDSOSMap() - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Singleton access to the os to NMI os map.
nmiToVDSSysInfo(SysInfo) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the VDSSysInfo object.
nmiToVDSSysInfo(SysInfo.Architecture, SysInfo.OS, String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
Returns the VDS VDSSysInfo object corresponding to the NMI arch and OS
NO_GRIDSTART_INDEX - 
Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
The index in the constant arrays for NoGridStart.
NO_MATCH - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
NO_OF_TRANSIENT_FLAGS - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The number of transient flags.
Node - Class in edu.isi.pegasus.planner.provisioner
An instance of this class represents an independent task of a workflow.
Node(String, String, long) - 
Constructor for class edu.isi.pegasus.planner.provisioner.Node
constructor
Node(String, String, int, long) - 
Constructor for class edu.isi.pegasus.planner.provisioner.Node
 
Node(String) - 
Constructor for class edu.isi.pegasus.planner.provisioner.Node
 
NodeCollapser - Class in edu.isi.pegasus.planner.refiner
This collapses the nodes of the same logical name scheduled on the same
 pool into fewer fat nodes.
NodeCollapser(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.refiner.NodeCollapser
The overloaded constructor.
nodeComparator() - 
Method in class edu.isi.pegasus.planner.partitioner.Horizontal
Singleton access to the job comparator.
nodeIterator() - 
Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
Returns an iterator for the nodes in the Graph.
nodeIterator() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
Returns an iterator for the nodes in the Graph.
NODENAME_ATTRIBUTE_KEY - 
Static variable in class edu.isi.pegasus.planner.invocation.Uname
The nodename attribute for the uname
nodes - 
Variable in class edu.isi.pegasus.planner.provisioner.Estimator
 
nodes - 
Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
 
NodeUsageCallback - Class in edu.isi.pegasus.planner.visualize.nodeusage
Implements callback interface to calculate node usage or number of jobs
 over time.
NodeUsageCallback() - 
Constructor for class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
The default constructor.
NoGridStart - Class in edu.isi.pegasus.planner.code.gridstart
This class ends up running the job directly on the grid, without wrapping
 it in any other launcher executable.
NoGridStart() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.NoGridStart
 
noHassleInstance() - 
Static method in class edu.isi.pegasus.common.util.CommonProperties
Singleton interface: Creates the one and only instance of the
 properties in the current application, and does not bother the
 programmer with exceptions.
noLine() - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
NON_SHARED_FS_CONFIGURATION_VALUE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
The value for the non shared filesystem configuration.
NON_SINGLETON_LOAD - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
 
NON_SINGLETON_LOAD - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
 
NonJavaCallout - Class in edu.isi.pegasus.planner.selector.site
This is the class that implements a call-out to a site selector which
 is an application or executable script.
NonJavaCallout() - 
Constructor for class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The default constructor.
nonSingletonInstance(String) - 
Static method in class edu.isi.pegasus.common.util.CommonProperties
Create a temporary property that is not attached to the Singleton.
nonSingletonInstance(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
The method that returns a Non Singleton instance of the dervived
 InfoProvider class.
nonSingletonInstance(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
The method that returns a Non Singleton instance of the dervived
 InfoProvider class.
nonSingletonInstance(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
The method that returns a Non Singleton instance of the dervived
 InfoProvider class.
nonSingletonInstance(String) - 
Static method in class edu.isi.pegasus.planner.common.PegasusProperties
To get a reference to the the object.
nonSingletonInstance() - 
Static method in class edu.isi.pegasus.planner.common.PegasusProperties
To get a reference to the the object.
NOOP_PREFIX - 
Static variable in class edu.isi.pegasus.planner.client.CPlanner
The prefix for the NoOP jobs that are created.
NOOP_PREFIX - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The prefix for the NoOP jobs that are created.
NoPOSTScript - Class in edu.isi.pegasus.planner.code.gridstart
This class refers to having no postscript associated with the job.
NoPOSTScript() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
The default constructor.
noquote(String) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Removes a pair of outer quotes, which are optional.
normalize() - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Normalizes a misconfigured nodename that contains a domainname.
NOT_PERMITTED_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Namespace
The key is not permitted in as it clashes with default Pegasus constructs.
Notifications - Class in edu.isi.pegasus.planner.classes
A container class that stores all the notifications that need to be done
 indexed by the various conditions.
Notifications() - 
Constructor for class edu.isi.pegasus.planner.classes.Notifications
The default constructor.
NOTIFICATIONS_FILE_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
The suffix to use while constructing the name of the metrics file
notPermitted(String) - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Warns about a namespace profile key that cannot be permitted.
now() - 
Method in class edu.isi.pegasus.common.util.Currently
Obtains the current time as formatted string according to
 the format option.
now(Date) - 
Method in class edu.isi.pegasus.common.util.Currently
Obtains the current time as formatted string according to
 the format option.
now(String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
 
NPbalance(LinkedList[], int, boolean) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
Non-propagate redistribution of this task
NUM_OF_EXPANDED_JOBS - 
Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The number of jobs into which each job in the partition graph is
 expanded to.
numberOfConsitutentJobs() - 
Method in class edu.isi.pegasus.planner.classes.AggregatedJob
Returns the number of constituent jobs.
numericValue(String) - 
Static method in class edu.isi.pegasus.common.util.CondorVersion
Converts a string into the corresponding numeric value.
numericValue() - 
Method in class edu.isi.pegasus.common.util.CondorVersion
Returns the condor version parsed by executing the condor_version 
 command.
NumJobsMeasurement - Class in edu.isi.pegasus.planner.visualize.nodeusage
Stores the number of jobs as an integer.
NumJobsMeasurement(Date, Integer, String) - 
Constructor for class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
The overloaded constructor.



O

OccupationDiagram - Class in edu.isi.pegasus.planner.provisioner
This class keeps structure of an Occupation Diagram and conduct BTS algorithm
OccupationDiagram(long) - 
Constructor for class edu.isi.pegasus.planner.provisioner.OccupationDiagram
Constructor
OccupationDiagram.NodeComp - Class in edu.isi.pegasus.planner.provisioner
Comparator which compare the schedulable duration of two nodes
OccupationDiagram.NodeComp() - 
Constructor for class edu.isi.pegasus.planner.provisioner.OccupationDiagram.NodeComp
 
olb - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
OLDFILE_TC_CLASS - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
 
One2One - Class in edu.isi.pegasus.planner.partitioner
This partitioning technique considers each of the job in the dax as a
 separate partition.
One2One(GraphNode, Map, PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.partitioner.One2One
The overloaded constructor.
ONE_DAY_IN_MILLS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.DateUtils
 
ONTOLOGY_LOCATION - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
OpenBrace - Class in edu.isi.pegasus.planner.parser.tokens
Class to convey a opened brace, no token value necessary.
OpenBrace() - 
Constructor for class edu.isi.pegasus.planner.parser.tokens.OpenBrace
 
OpenParanthesis - Class in edu.isi.pegasus.planner.parser.tokens
Class to convey a closed paranthesis, no token value necessary.
OpenParanthesis() - 
Constructor for class edu.isi.pegasus.planner.parser.tokens.OpenParanthesis
 
optionalArgSet() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Returns the flag to denote whether the optional argument for the random was
 specified or not.
orb - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
order(Partition) - 
Method in class edu.isi.pegasus.planner.cluster.Abstract
Returns the nodes in the partition as a List in a particular order.
order(Partition) - 
Method in class edu.isi.pegasus.planner.cluster.Vertical
Returns the nodes in the partition as a List in the topologically sorted
 order.
Os - Class in edu.isi.pegasus.planner.catalog.transformation.classes
 
Os(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
os - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Os of the system.
OS - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "os".
OS_COMBINE_SEPARATOR - 
Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
The separator used to combine OS version and release.
OS_COMBINE_SEPARATOR - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
The separator used to combine OS version and release.
OS_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the
 operating system type of the remote machines to which the jobmanager talks
 to.
osg_grid - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
osg_grid - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
OSGMM - Class in edu.isi.pegasus.planner.catalog.site.impl
The OSGMM implementation of the Site Catalog interface.
OSGMM() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
The default constructor.
OSGMM.ListCallback - Class in edu.isi.pegasus.planner.catalog.site.impl
An inner class, that implements the StreamGobblerCallback to store all
 the lines in a List
OSGMM.ListCallback() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
Default Constructor.
OSRELEASE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "osrelease".
osToOSReleaseAndVersion() - 
Static method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
Maps each to OS to a specific OS release for purposes of picking up the 
 correct worker package for a site.
osversion - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Os version of the system.
OSVERSION - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserver word "osversion".
OTHER_FILE - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The type denoting that a logical file is an other file.
OTHER_TYPE - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The string value of a file that is of type other.
outEdges - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
OUTPUT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines the file on the submit host on
 which postscript is to be invoked.
outputFiles - 
Variable in class edu.isi.pegasus.planner.classes.Job
Contains the output files for the submit file.



P

PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
 
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
The name of the package where the implementing classes reside.
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
Default PACKAGE PATH for the TC implementing classes
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
The name of the package in which the writers are implemented.
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.partitioner.Partitioner
The package name where the implementing classes of this interface reside.
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.CreateDirectory
The name of the package in which all the implementing classes are.
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The name of the package in which all the implementing classes are.
PACKAGE_NAME - 
Static variable in class edu.isi.pegasus.planner.selector.TransformationSelector
 
PARALLEL_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
PARALLEL_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The condor universe key value for parallel universe.
PARAM_ACCOUNT_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_CE_ACCOUNT_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_END_DATE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_END_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_ACTIVE_STATUS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_ACTIVE_STATUS_OPTION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_CURRENT_RSV_STATUS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_CURRENT_RSV_STATUS_OPTION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_DISABLE_STATUS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_DISABLE_STATUS_OPTION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_GRID_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_GRID_TYPE_OPTION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_VO_SUPPORT - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_FILTER_VO_SUPPORT_OPTION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_GIP_STATUS_ATTRS_SHOWFQDN - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_GIP_STATUS_ATTRS_SHOWTESTRESULTS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_RESOURCE_TO_DISPLAY_ALL_RESOURCES - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SE_ACCOUNT_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_START_DATE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_START_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWENVIRONMNENT - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWFQDN - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWRSVSTATUS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWSERVICE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWVOMEMBERSHIP - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
PARAM_SUMMARY_ATTRS_SHOWVOOWNERSHIP - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
parent - 
Variable in class edu.isi.pegasus.planner.classes.PCRelation
the parent making up the
 parent child relationship pair
 in a dag
Parent - Class in edu.isi.pegasus.planner.dax
 
Parent(String) - 
Constructor for class edu.isi.pegasus.planner.dax.Parent
 
Parent(Parent) - 
Constructor for class edu.isi.pegasus.planner.dax.Parent
 
Parent(String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.Parent
 
PARENT_JOB_ID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The atrribute key for parent job id.
PARENT_TASK_ID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The atrribute key for parent task id.
parents(String, List) - 
Method in class edu.isi.pegasus.planner.cluster.Abstract
Associates the relations between the partitions with the corresponding
 relations between the clustered jobs that are created for each Partition.
parents(String, List) - 
Method in interface edu.isi.pegasus.planner.cluster.Clusterer
Associates the relations between the partitions with the corresponding
 relations between the clustered jobs that are created for each Partition.
parents(String, List) - 
Method in class edu.isi.pegasus.planner.cluster.Horizontal
Am empty implementation of the callout, as state is maintained
 internally to determine the relations between the jobs.
parentsColored(int) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Returns if all the parents of that node have the color that is specified.
parse(String) - 
Static method in class edu.isi.pegasus.common.util.Boolean
Converts a boolean string representation into a boolean value.
parse(String, boolean) - 
Static method in class edu.isi.pegasus.common.util.Boolean
Converts a boolean string representation into a boolean value.
parse(String) - 
Static method in class edu.isi.pegasus.common.util.Currently
Parses one of the ISO 8601 that it produces.
parse(String) - 
Static method in class edu.isi.pegasus.common.util.ProfileParser
Parses a given user profile specification into a map of maps.
parse(String, int) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Parses a line from the file replica catalog
parse(String) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
parse(String) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Consumes commands that control the replica management.
parse(String, String) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Consumes commands that control the replica management.
parse(InputStream) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
This function parses a XML source from an InputStream source, and
 creates java class instances that correspond to different elements
 in the XML source.
parse(Reader) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
This function parses a XML source from the new Reader source, and
 creates java class instances that correspond to different elements
 in the XML source.
parse() - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
Parses the complete input stream, into the PoolConfig data object that
 holds the contents of all the sites referred to in the stream.
parse(boolean) - 
Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
Parses the complete input stream, into the PoolConfig data object that
 holds the contents of all the sites referred to in the stream.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseCommandLineArguments(String[], boolean) - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.PegasusGetSites
Parses the command line arguments using GetOpt and sets the class
 member variables.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.PlotNodeUsage
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.RankDAX
Parses the command line arguments using GetOpt and sets the class
 member variables.
parseCommandLineArguments(String[]) - 
Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Parses the command line arguments using GetOpt and returns a
 PlannerOptions contains all the options passed by the
 user at the command line.
parseContent(String, String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
Parses the content and stores it in a Space object.
parseContent(String, String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
Parses the content and stores it in a SpaceUsage object.
parseData(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
Parses the data in the data section.
parseDate(String) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Small helper to parse the different date varieties and deal with
 Java obnoxeity.
parseInputFiles(List<String>, String, String) - 
Method in class edu.isi.pegasus.planner.client.SCClient
Parses the input files in the input format and returns a String in the 
 output format.
parseInputFilesForBackwardCompatibility(List<String>, String, String) - 
Method in class edu.isi.pegasus.planner.client.SCClient
Parses the input files in the input format and returns a String in the old XML
 output format.
parseInt(String) - 
Static method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
Parses a string into an integer.
parseInt(String, String) - 
Method in class edu.isi.pegasus.planner.namespace.aggregator.Abstract
Formats the String value as an integer.
parseInt(String) - 
Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Parses a string into an integer.
parseKickstartFile(String) - 
Method in class edu.isi.pegasus.planner.visualize.KickstartParser
 
Parser - Class in edu.isi.pegasus.planner.parser
This is the base class which all the xml parsing classes extend.
Parser(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.parser.Parser
Intialises the parser.
Parser(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.parser.Parser
Intialises the parser.
ParserStackElement - Class in edu.isi.pegasus.planner.parser
This class keeps the name of an element and its corresponding
 java object reference.
ParserStackElement(String, Object) - 
Constructor for class edu.isi.pegasus.planner.parser.ParserStackElement
The overloaded constructor
parseStdOut(Job, String) - 
Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
Extracts the chosen site from the site selector's answer.
parseTC(PegasusProperties) - 
Method in class edu.isi.pegasus.planner.client.TCConverter
Parses the input format specified in the properties file and returns list of TransfromationCatalogEntry
PARSING_DONE_ERROR_MESSAGE - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
The parsing completed message.
Partition - Class in edu.isi.pegasus.planner.partitioner
This is an abstract container for a partition in the graph.
Partition() - 
Constructor for class edu.isi.pegasus.planner.partitioner.Partition
The default constructor.
Partition(List, String) - 
Constructor for class edu.isi.pegasus.planner.partitioner.Partition
The overloaded constructor.
PARTITION_KEY - 
Static variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
The key that designates the partition to which a node belongs to.
PARTITION_PREFIX - 
Static variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
The prefix added to the name of the dax to identify it is a partitioned
 dax.
PartitionAndPlan - Class in edu.isi.pegasus.planner.partitioner
The class that triggers the partition and plan structure in pegasus.
PartitionAndPlan() - 
Constructor for class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
The default constructor.
PartitionDAX - Class in edu.isi.pegasus.planner.client
The class ends up partitioning the dax into smaller daxes according to the
 various algorithms/criteria, to be used for deferred planning.
PartitionDAX() - 
Constructor for class edu.isi.pegasus.planner.client.PartitionDAX
The default constructor.
partitionDAX(PegasusProperties, String, String, String) - 
Method in class edu.isi.pegasus.planner.client.PartitionDAX
 
Partitioner - Class in edu.isi.pegasus.planner.partitioner
The abstract class that lays out the api to do the partitioning of the dax
 into smaller daxes.
Partitioner(GraphNode, Map, PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.partitioner.Partitioner
The overloaded constructor.
PartitionerFactory - Class in edu.isi.pegasus.planner.partitioner
A Factory class to load the right type of partitioner at runtime, as
 specified by the Properties.
PartitionerFactory() - 
Constructor for class edu.isi.pegasus.planner.partitioner.PartitionerFactory
 
PartitionerFactoryException - Exception in edu.isi.pegasus.planner.partitioner
Class to notify of failures while instantiating Partitioner implementations.
PartitionerFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
Constructs a PartitionerFactoryException with no detail
 message.
PartitionerFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
Constructs a PartitionerFactoryException with the specified detailed
 message.
PartitionerFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
Constructs a PartitionerFactoryException with the
 specified detailed message and a cause.
PartitionerFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
Constructs a PartitionerFactoryException with the
 specified detailed message and a cause.
partitionerTable() - 
Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
Returns a table that maps, the clustering technique to an appropriate
 partitioning technique.
PARTITIONING_CLASSES - 
Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
An array of known partitioning classes.
partitionRelation2XML(String, String) - 
Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
Returns the xml description of a relation between 2 partitions.
partitionRelation2XML(String, List) - 
Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
Returns the xml description of a relation between 2 partitions.
partitionRelation2XML(String, Set) - 
Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
Returns the xml description of a relation between 2 partitions.
partOfDeferredRun() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Returns a boolean indicating whether this invocation is part of a
 deferred execution or not.
PASOA_PPS_PROVIDER - 
Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
The default Pasoa PPS implementation to be used.
PATCH - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
The constant for patche version type.
patch - 
Variable in class VersionTask
member variable to obatain the patch-level number.
PATH_VALUE - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
The path to be set for create dir jobs.
PATH_VALUE - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The path to be set for create dir jobs.
Patterns - Class in edu.isi.pegasus.planner.dax
 
Patterns() - 
Constructor for class edu.isi.pegasus.planner.dax.Patterns
 
PCRelation - Class in edu.isi.pegasus.planner.classes
Captures the parent child relationship between the  jobs in the ADAG.
PCRelation() - 
Constructor for class edu.isi.pegasus.planner.classes.PCRelation
the default constructor
PCRelation(String, String, boolean) - 
Constructor for class edu.isi.pegasus.planner.classes.PCRelation
the overloaded constructor
PCRelation(String, String) - 
Constructor for class edu.isi.pegasus.planner.classes.PCRelation
the overloaded constructor
PDAX2MDAG - Class in edu.isi.pegasus.planner.parser.pdax
This callback ends up creating the megadag that contains the smaller dags
 each corresponding to the one level as identified in the pdax file
 generated by the partitioner.
PDAX2MDAG(String, PegasusProperties, PlannerOptions) - 
Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The overloaded constructor.
PDAX2MDAG.GrepCallback - Class in edu.isi.pegasus.planner.parser.pdax
An inner class, that implements the StreamGobblerCallback to count
 the occurences of a word in a document.
PDAX2MDAG.GrepCallback(String) - 
Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
Overloaded Constructor.
PDAXCallbackFactory - Class in edu.isi.pegasus.planner.parser.pdax
A factory class to load the appropriate DAX callback implementations that need
 to be passed to the DAX Parser.
PDAXCallbackFactory() - 
Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
 
PDAXCallbackFactoryException - Exception in edu.isi.pegasus.planner.parser.pdax
Class to notify of failures while instantiating PDAXCallback implementations.
PDAXCallbackFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
Constructs a PDAXCallbackFactoryException with no detail
 message.
PDAXCallbackFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
Constructs a PDAXCallbackFactoryException with the specified detailed
 message.
PDAXCallbackFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
Constructs a PDAXCallbackFactoryException with the
 specified detailed message and a cause.
PDAXCallbackFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
Constructs a PDAXCallbackFactoryException with the
 specified detailed message and a cause.
PDAXParser - Class in edu.isi.pegasus.planner.parser
This is a parser class for the parsing the pdax that contain the jobs in the
 various partitions and the relations between the partitions.
PDAXParser(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.parser.PDAXParser
The default constructor.
PDAXParser(String, PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.parser.PDAXParser
The constructor initialises the parser, and turns on the validation feature
 in Xerces.
PDAXWriter - Class in edu.isi.pegasus.planner.partitioner
It writes out the partition graph in xml form.
PDAXWriter(String, String) - 
Constructor for class edu.isi.pegasus.planner.partitioner.PDAXWriter
The overloaded constructor.
Pegasus - Class in edu.isi.pegasus.planner.namespace
A Planner specific namespace.
Pegasus() - 
Constructor for class edu.isi.pegasus.planner.namespace.Pegasus
The default constructor.
Pegasus(Map) - 
Constructor for class edu.isi.pegasus.planner.namespace.Pegasus
The overloaded constructor.
PEGASUS - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
PEGASUS_BIN_DIR - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
The name of the environment variable PEGASUS_BIN_DIR.
PEGASUS_CONFIGURATION_PROPERTY_KEY - 
Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
The property key for pegasus configuration.
PEGASUS_CONNECT_STDIN_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
Whether to connect stdin or not
PEGASUS_EXECUTE_IN_INITIAL_DIR - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The name of the environment variable that determines if job should be executed in initial dir or not
PEGASUS_HOME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
The name of the environment variable PEGASUS_HOME.
PEGASUS_HOME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
The name of the environment variable PEGASUS_HOME.
PEGASUS_INFO - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
Array storing the names of the attributes that are stored with the
 site.
PEGASUS_INITIAL_DIR_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The name of the environment variable for the initial dir for pegasus lite local
PEGASUS_LITE_COMMON_FILE_BASENAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The basename of the pegasus lite common shell functions file.
PEGASUS_LITE_LOCAL_FILE_BASENAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The Pegasus Lite local wrapper basename.
PEGASUS_LOGMANAGER - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the Logging manager
PEGASUS_MONITORD_LAUNCH_PROPERTY_KEY - 
Static variable in class edu.isi.pegasus.planner.client.CPlanner
The name of the property key that determines whether pegasus-run
 should monitord or not.
PEGASUS_PROPERTIES - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 PegasusProperties.
PEGASUS_PROPERTY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
The pegasus property prefix.
PEGASUS_SHELL_RUNNER_FUNCTIONS_BASENAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.Shell
 
PEGASUS_TRANSFER_INPUT_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The name of the environment variable for transferring input files
PEGASUS_TRANSFER_OUTPUT_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The name of the environment variable for transferring output files
PEGASUS_TRANSFER_WORKER_PACKAGE_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
PEGASUS_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The version of pegasus matching the planner.
PEGASUS_WORKER_EXECUTABLES - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
Array storing the names of the executables in the $PEGASUS_HOME/bin directory
 Associates the transformation name with the executable basenames
PEGASUS_WORKER_NODE_EXECUTION_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
PegasusBag - Class in edu.isi.pegasus.planner.classes
A bag of objects that needs to be passed to various refiners.
PegasusBag() - 
Constructor for class edu.isi.pegasus.planner.classes.PegasusBag
The default constructor.
PegasusConfiguration - Class in edu.isi.pegasus.planner.common
A utility class that returns JAVA Properties that need to be set based on
 a configuration value
PegasusConfiguration(LogManager) - 
Constructor for class edu.isi.pegasus.planner.common.PegasusConfiguration
Overloaded Constructor
PegasusExitCode - Class in edu.isi.pegasus.planner.code.gridstart
The exitcode wrapper, that can parse kickstart output's and put them in the
 database also.
PegasusExitCode() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
The default constructor.
PegasusFile - Class in edu.isi.pegasus.planner.classes
The logical file object that contains the logical filename which is got from
 the DAX, and the associated set of flags specifying the transient
 characteristics.
PegasusFile() - 
Constructor for class edu.isi.pegasus.planner.classes.PegasusFile
The default constructor.
PegasusFile(String) - 
Constructor for class edu.isi.pegasus.planner.classes.PegasusFile
The overloaded constructor.
PegasusFile.LINKAGE - Enum in edu.isi.pegasus.planner.classes
Enumeration for denoting type of linkage
PegasusFile.LINKAGE() - 
Constructor for enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
 
PegasusGetSites - Class in edu.isi.pegasus.planner.client
The client that replaces the perl based pegasus-get-sites.
PegasusGetSites() - 
Constructor for class edu.isi.pegasus.planner.client.PegasusGetSites
The default constructor.
PegasusLite - Class in edu.isi.pegasus.planner.code.gridstart
This class launches all the jobs using Pegasus Lite a shell script based wrapper.
PegasusLite() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusLite
 
PegasusProperties - Class in edu.isi.pegasus.planner.common
A Central Properties class that keeps track of all the properties used by
 Pegasus.
PegasusProperties(String) - 
Constructor for class edu.isi.pegasus.planner.common.PegasusProperties
The constructor that constructs the default paths to the various
 configuration files, and populates the singleton instance as required.
PegasusProperties.CLEANUP_SCOPE - Enum in edu.isi.pegasus.planner.common
An enum defining The scope for cleanup algorithm
PegasusProperties.CLEANUP_SCOPE() - 
Constructor for enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
 
pegProperties - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
Ensures only one object is created always.
PegRandom - Class in edu.isi.pegasus.planner.common
A Helper class that returns the Random values
 using java.util.Random class.
PegRandom() - 
Constructor for class edu.isi.pegasus.planner.common.PegRandom
 
percent - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
 
PERFMETRIC_CPU_UTILIZATION - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PERFMETRIC_CPU_UTILIZATION - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
PERFMETRIC_MEMORY_UTILIZATION - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PERFMETRIC_MEMORY_UTILIZATION - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
PERFMETRIC_NETWORK_BANDWIDTH - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PERFMETRIC_NETWORK_BANDWIDTH - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
PERFMETRIC_TIME_DURATION - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PERFMETRIC_TIME_DURATION - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
PERIODIC_RELEASE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies the peridic release
PERIODIC_REMOVE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies the peridic remove
pfn - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
pfn - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
PFN - Class in edu.isi.pegasus.planner.dax
 
PFN(String) - 
Constructor for class edu.isi.pegasus.planner.dax.PFN
 
PFN(String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.PFN
 
PFN - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "pfn".
PFN_HINT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Hints
The pfnHint key
pfnIterator() - 
Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
Returns an iterator to the list of ReplicaCatalogEntry
 objects.
pickPath(String, String) - 
Method in class edu.isi.pegasus.common.util.CommonProperties
 
PLANNER_ARGUMENTS_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The arguments passed to the planner.
PLANNER_OPTIONS - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 options passed to the planner.
PLANNER_VERSION_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The Key for the planner version
PlannerMetrics - Class in edu.isi.pegasus.planner.classes
A Data class containing the metrics about the planning instance.
PlannerMetrics() - 
Constructor for class edu.isi.pegasus.planner.classes.PlannerMetrics
The default metrics.
PlannerOptions - Class in edu.isi.pegasus.planner.classes
Holds the information about thevarious options which user specifies to
 the Concrete Planner at runtime.
PlannerOptions() - 
Constructor for class edu.isi.pegasus.planner.classes.PlannerOptions
Default Constructor.
PLEVEL - 
Static variable in class edu.isi.pegasus.common.util.Version
This constant defines the patch level version.
plot(WorkflowMeasurements, char, String) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
Plot out the space usage.
Plot - Interface in edu.isi.pegasus.planner.visualize.spaceusage
A plot interface that allows us to plot the SpaceUsage in different
 formats.
plot(SpaceUsage, char, String) - 
Method in interface edu.isi.pegasus.planner.visualize.spaceusage.Plot
Plot out the space usage.
plot(SpaceUsage, char, String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
Plot out the space usage.
Ploticus - Class in edu.isi.pegasus.planner.visualize.nodeusage
An implementation that plots in the Ploticus format.
Ploticus() - 
Constructor for class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
The default constructor.
Ploticus - Class in edu.isi.pegasus.planner.visualize.spaceusage
An implementation that plots in the Ploticus format.
Ploticus() - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
The default constructor.
PlotNodeUsage - Class in edu.isi.pegasus.planner.client
This parses the kickstart records and generates input files for ploticus,
 to visualize.
PlotNodeUsage() - 
Constructor for class edu.isi.pegasus.planner.client.PlotNodeUsage
Default constructor.
PlotSpaceUsage - Class in edu.isi.pegasus.planner.client
This parses the kickstart records and generates input files for ploticus,
 to visualize.
PlotSpaceUsage() - 
Constructor for class edu.isi.pegasus.planner.client.PlotSpaceUsage
Default constructor.
PoolConfig - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
A data class to store information about the various remote sites.
PoolConfig() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
The default constructor.
PoolInfoProvider - Class in edu.isi.pegasus.planner.catalog.site.impl.old
This is an abstract class which defines the interface for the information
 providers like sites.xml, sites.catalog.
PoolInfoProvider() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
 
PoolMode - Class in edu.isi.pegasus.planner.catalog.site.impl.old
This class determines at runtime which
 implementing class to use as a Pool Handle.
PoolMode() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
 
poolNotFoundMsg(String, String) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
This generates a error message for pool not found in the pool
 config file.
popEvent() - 
Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
Pop the event on top of the internal stack.
popEvent() - 
Method in interface edu.isi.pegasus.common.logging.LogFormatter
Pop the event on top of the internal stack.
populate(SiteInfo) - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
Populates all the attributes except the handle, associated with the site
 in the SiteInfo object.
populatePeriodicReleaseAndRemoveInJob(Job) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Populates the periodic release and remove values in the job.
populateSiteMap(List) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
Populates the number of free nodes for each site, by querying the
 Site Catalog.
populateSiteMaps(String) - 
Method in class edu.isi.pegasus.planner.selector.replica.Restricted
Builds up the set of preferred and ignored sites for a site.
populateTC(InputStream) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Populates the internal copy of the transformation catalog from a byte
 stream (input stream).
populateTC() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Populates the internal copy of the transformation catalog from the file
 containing the transformation catalog in the 6 column format.
populateTC(Reader) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Adds multiple entries into the TC.
port - 
Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
 
PORTFOLIO_ID - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PORTFOLIO_ID - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
POST_SCRIPT_ARGUMENTS_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines the arguments that need to be passed
 to the postscript.
POST_SCRIPT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines what post script is to be invoked
 when the job completes.
POST_SCRIPT_PATH_PREFIX - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The key prefix that determines the path to a postscript
POST_SCRIPT_REPLACEMENT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The key name for the post script that is put in the .dag file.
POST_SCRIPT_SCOPE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The key prefix that determines the path to a postscript
POSTJOB_MARKER - 
Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
The marker for the POSTJOB.
postProcess(TransferJob) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
An optional method that allows the derived classes to do their own
 post processing on the the transfer job before it is returned to
 the calling module.
postProcess(TransferJob) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
Makes sure the stdin is transferred by the Condor File Transfer
 Mechanism.
postProcess(TransferJob) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
Makes sure the stdin is transferred by the Condor File Transfer
 Mechanism.
postProcess(TransferJob) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
An optional method that allows the derived classes to do their own
 post processing on the the transfer job before it is returned to
 the calling module.
postScript(String) - 
Method in class edu.isi.pegasus.planner.code.GridStartFactory
Returns the cached implementation of POSTScript
 from the implementing class table.
POSTScript - Interface in edu.isi.pegasus.planner.code
The interface that defines the creation of a POSTSCRIPT for a job.
POSTSCRIPT_IMPLEMENTING_CLASS_TABLE - 
Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
A table that associates POSTScript implementing classes with their
 SHORT_NAMES.
PPS - Interface in edu.isi.pegasus.planner.provenance.pasoa
Pegasus P-assertion Support interface

 Classes that implement this interface assist in the creation of p-assertions for the Pegasus workflow refinement system.
PPSFactory - Class in edu.isi.pegasus.planner.provenance.pasoa.pps
The factory for instantiating an XMLProducer.
PPSFactory() - 
Constructor for class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
 
PPSFactoryException - Exception in edu.isi.pegasus.planner.provenance.pasoa.pps
Class to notify of failures while instantiating PPS implementations.
PPSFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
Constructs a PPSFactoryException with no detail
 message.
PPSFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
Constructs a PPSFactoryException with the specified detailed
 message.
PPSFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
Constructs a PPSFactoryException with the
 specified detailed message and a cause.
PPSFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
Constructs a PPSFactoryException with the
 specified detailed message and a cause.
PRE_SCRIPT_ARGUMENTS_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines the arguments that need to be passed
 to the postscript.
PRE_SCRIPT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines what pre script is to be invoked
 when the job is run.
PRE_SCRIPT_REPLACEMENT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The key name for the pre script that is put in the .dag file.
prec - 
Variable in class edu.isi.pegasus.planner.provisioner.Estimator
 
prefer(String, String) - 
Method in class edu.isi.pegasus.planner.selector.replica.Restricted
Returns a boolean indicating whether a source site is to be preffered for
 staging to a destination site
PREFIX_PROPERTIES - 
Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The prefix of the property names that specify the environment
 variables that need to be set before calling out to the site
 selector.
PREFIX_TEMPORARY_FILE - 
Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The prefix to be used while creating a temporary file to pass to
 the external siteselector.
PREJOB_MARKER - 
Static variable in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
The marker for the PREJOB.
prepareInputFile(Job, List) - 
Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
Writes job knowledge into the temporary file passed to the external
 site selector.
prepareSTDINAndAssociateCredentials(TransferJob, Collection, String, int) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
Prepares the stdin for the transfer job.
preserveParserLineBreaks() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to preserver line breaks.
print(boolean) - 
Static method in class edu.isi.pegasus.common.util.Boolean
Converts a boolean value into a strict representation of it.
print() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
print() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
print() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
print() - 
Method in class edu.isi.pegasus.planner.provisioner.Edge
 
print() - 
Method in class edu.isi.pegasus.planner.provisioner.Node
 
print() - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
Prints out the third party state for the various sites.
print() - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Prints out the third party state for the various sites.
printDagString(String) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Writes a string to the dag file.
printList(List) - 
Method in class edu.isi.pegasus.planner.cluster.Horizontal
A utility method to print short description of jobs in a list.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Prints the long description, displaying in detail what the various options
 to the command stand for.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.Executable
This method is used to print the long version of the command.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
Prints the long description, displaying in detail what the various options
 to the command stand for.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.PartitionDAX
Generated the long version of the help on the stdout.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.PegasusGetSites
Prints out the long help.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.PlotNodeUsage
Prints the long description, displaying in detail what the various options
 to the command stand for.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage
Prints the long description, displaying in detail what the various options
 to the command stand for.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.RankDAX
This method is used to print the long version of the command.
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.SCClient
 
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.TCClient
 
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.TCConverter
 
printLongVersion() - 
Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Prints the long description, displaying in detail what the various options
 to the command stand for.
printNodes() - 
Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
 
printShortHelp() - 
Method in class edu.isi.pegasus.planner.client.RankDAX
This is used to print the short version of the command.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Prints out a short description of what the command does.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.Executable
This is used to print the short version of the command.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
Prints out a short description of what the command does.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.PartitionDAX
Generates the short version of the help on the stdout.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.PegasusGetSites
The short help version.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.PlotNodeUsage
Prints out a short description of what the command does.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.PlotSpaceUsage
Prints out a short description of what the command does.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.RankDAX
This is used to print the short version of the command.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.SCClient
Returns the short help.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.TCClient
 
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.TCConverter
Prints the short help.
printShortVersion() - 
Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Prints out a short description of what the command does.
printVector(String, Vector) - 
Method in class edu.isi.pegasus.planner.refiner.Engine
It prints the contents of the Vector, with the first line being the heading.
printXMLFormat(TransformationStore) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
Prints the transformations in XML format
PRIORITY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies the priority for the job.
PRIORITY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines the priority a job is assigned.
Proc - Class in edu.isi.pegasus.planner.invocation
The proc element.
Proc() - 
Constructor for class edu.isi.pegasus.planner.invocation.Proc
The default constructor
PROCESS_CATALOG_IMPL_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
The property that designates which Process catalog impl to pick up.
processingInstruction(String, String) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Receive a processing instruction.
Processor - Class in edu.isi.pegasus.planner.selector.site.heft
A data class that is used to simulate a processor on a site.
Processor() - 
Constructor for class edu.isi.pegasus.planner.selector.site.heft.Processor
The default constructor.
processParents(Job, Vector) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
It processes a nodes parents and determines if nodes are to be added
 or not.
PROFILE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
The constant to be passed to the accessor functions to get or set the
 list of Profile objects for the remote site.
profile - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
Profile - Class in edu.isi.pegasus.planner.classes
This Class hold informations about profiles associated with a tc.
Profile() - 
Constructor for class edu.isi.pegasus.planner.classes.Profile
C'tpr for the class;
Profile(String, String, String) - 
Constructor for class edu.isi.pegasus.planner.classes.Profile
This constructor allows to set the namespace , key and value of the PoolProfile.
profile - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
Profile - Class in edu.isi.pegasus.planner.dax
Profile Object for the DAX API
Profile(String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.Profile
Create a new Profile object
Profile(String, String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.Profile
Create a new Profile object
Profile(Profile.NAMESPACE, String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.Profile
 
Profile(Profile) - 
Constructor for class edu.isi.pegasus.planner.dax.Profile
Copy constructor
PROFILE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserver word "profile".
PROFILE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "profile".
Profile.NAMESPACE - Enum in edu.isi.pegasus.planner.dax
Supported NAMESPACES.
Profile.NAMESPACE() - 
Constructor for enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
 
ProfileParser - Class in edu.isi.pegasus.common.util
Converts between the string version of a profile specification
 and the parsed triples and back again.
ProfileParser() - 
Constructor for class edu.isi.pegasus.common.util.ProfileParser
 
ProfileParserException - Exception in edu.isi.pegasus.common.util
This class is used to signal errors while parsing profile strings
ProfileParserException(String, int) - 
Constructor for exception edu.isi.pegasus.common.util.ProfileParserException
 
ProfileParserException(String, int, Throwable) - 
Constructor for exception edu.isi.pegasus.common.util.ProfileParserException
 
Profiles - Class in edu.isi.pegasus.planner.catalog.classes
Maintains profiles for different namespaces.
Profiles() - 
Constructor for class edu.isi.pegasus.planner.catalog.classes.Profiles
The default constructor.
profiles - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
Profiles.NAMESPACES - Enum in edu.isi.pegasus.planner.catalog.classes
The enumeration of valid namespaces.
Profiles.NAMESPACES() - 
Constructor for enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
 
PROG - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
PROG_SETUP - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
prop(String, Object) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
Sets a SAX property while capturing failed features right here.
PROPERTIES_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The path to the pegasus properties file
PROPERTIES_PREFIX - 
Static variable in class edu.isi.pegasus.common.logging.LogManager
Prefix for the property subset to use with the LogManager
PROPERTY_FILENAME - 
Static variable in class edu.isi.pegasus.common.util.CommonProperties
Basename of the file to read to obtain system properties
PROPERTY_IGNORE_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
The property suffix for determining the ignored sites for a site x.
PROPERTY_PREFER_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
The property suffix for determining the preferred sites for a site x.
PROPERTY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
The prefix for the property subset for connecting to the individual
  catalogs.
PROPERTY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
The property prefix for all Regex rank property.
PROPERTY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
The property prefix for all properties used by this selector.
propertyNames() - 
Method in class edu.isi.pegasus.common.util.CommonProperties
Accessor: enumerate all keys known to this property collection
propertyTable() - 
Static method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
Singleton access to the type table
 Contains the mapping of a property to the third party transfer type
propertyTable() - 
Static method in class edu.isi.pegasus.planner.transfer.TPT
Singleton access to the type table
 Contains the mapping of a property to the third party transfer type
Proxy - Class in edu.isi.pegasus.common.credential.impl
A convenice class that allows us to determine the path to the user proxy.
Proxy() - 
Constructor for class edu.isi.pegasus.common.credential.impl.Proxy
The default constructor.
pruneURLPrefix(String) - 
Static method in class edu.isi.pegasus.planner.common.Utility
Prunes the url prefix to ensure that only the url prefix as wanted
 by Pegasus goes through.
pushedChildren(long) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
 
pushedParents(long) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
 
put(CredentialHandler.TYPE, CredentialHandler) - 
Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
Inserts an entry into the implementing class table.
put(String, ReplicaLocation) - 
Method in class edu.isi.pegasus.planner.classes.ReplicaStore
Inserts entry in the store overwriting any existing entry.
put(String, Object) - 
Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
Inserts an entry into the implementing class table.
put(String, Object) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
Inserts an entry into the implementing class table.
put(Object, Object) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
It puts the key and the value in the internal map.
put(String, RemoteTransfer.TransferState) - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
Inserts an entry in to the State Map, that maintains state of various
 sites.
put(String, TPT.TPTState) - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Inserts an entry in to the State Map, that maintains state of various
 sites.



Q

query - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
QUERY_ARGUMENTS - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_ARGUMENTS - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_ID - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_ID - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_INPUT - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_INPUT - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_NAME - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_NAME - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_NUMBER - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_NUMBER - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_OUTPUT - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_OUTPUT - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUERY_RESPONSE - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
QUERY_RESPONSE - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
QUEUED_TEMPLATES - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
quote(String, boolean) - 
Static method in class edu.isi.pegasus.common.util.XMLOutput
Escapes certain characters inappropriate for XML content output.
quote(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
Quotes a string that may contain special SQL characters.
quote(Escape, String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Quotes a string only if necessary.
quote(String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
Quotes a String.
quote(String) - 
Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
Parses a string and condor quotes it.
quote(String, boolean) - 
Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
Parses a string and condor quotes it.
quote(String) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
Condor Quotes a string
quote(String) - 
Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
Condor Quotes a string
QuotedString - Class in edu.isi.pegasus.planner.parser.tokens
Class to capture the content within a quoted string.
QuotedString(String) - 
Constructor for class edu.isi.pegasus.planner.parser.tokens.QuotedString
Initializes an instance of a quoted string.
quoteTransferURL() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns whether to introduce quotes around url's before handing to
 g-u-c and condor.



R

RAM - Class in edu.isi.pegasus.planner.invocation
The RAM element.
RAM() - 
Constructor for class edu.isi.pegasus.planner.invocation.RAM
The default constructor
Random - Class in edu.isi.pegasus.planner.selector.site
A random site selector that maps to a job to a random pool, amongst the subset
 of pools where that particular job can be executed.
Random() - 
Constructor for class edu.isi.pegasus.planner.selector.site.Random
The default constructor.
Random - Class in edu.isi.pegasus.planner.selector.transformation
This implemenation of the TCSelector selects a random
 TransformationCatalogEntry from a List of entries.
Random() - 
Constructor for class edu.isi.pegasus.planner.selector.transformation.Random
 
Rank - Class in edu.isi.pegasus.planner.ranking
The Rank class that ranks the DAX'es
Rank() - 
Constructor for class edu.isi.pegasus.planner.ranking.Rank
The default constructor.
rank(Collection<String>) - 
Method in class edu.isi.pegasus.planner.ranking.Rank
Ranks the daxes, and returns a sort collection of Ranking objects.
RankDAX - Class in edu.isi.pegasus.planner.client
A client that ranks the DAX'es corresponding to the request id.
RankDAX() - 
Constructor for class edu.isi.pegasus.planner.client.RankDAX
The default constructor.
Ranking - Class in edu.isi.pegasus.planner.ranking
A Data class that associates a DAX with the rank.
Ranking(String, long) - 
Constructor for class edu.isi.pegasus.planner.ranking.Ranking
The overloaded constructor.
rb - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
RC_DERIVATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The derivation name for the transfer jobs.
RC_DERIVATION_NS - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The derivation namespace for the transfer jobs.
RC_DERIVATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The version number for the derivations for registration jobs.
RC_TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The logical name of the transformation used.
RC_TRANSFORMATION_NS - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The transformation namespace for the regostration jobs.
RC_TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The logical name of the transformation used.
RCClient - Class in edu.isi.pegasus.planner.client
This class interfaces the with the replica catalog API to delve into the
 underlying true catalog without knowing (once instantiated) which one it is.
RCClient(String) - 
Constructor for class edu.isi.pegasus.planner.client.RCClient
ctor: Constructs a new instance of the commandline interface to replica
 catalogs.
rcIterator() - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
Returns an iterator to iterate through the list of ReplicaCatalogs that
 MRC is associated with.
READ_ONLY_KEY - 
Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
The name of the key that disables writing back to the cache file.
readDAX() - 
Method in class edu.isi.pegasus.planner.provisioner.Estimator
 
redirect(OutputStream, String) - 
Method in class edu.isi.pegasus.common.util.StreamGobbler
Sets the output stream to which to redirect the contents of the input
 stream.
reduceDag(ReplicaCatalogBridge) - 
Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
Reduces the workflow on the basis of the existence of lfn's in the
 replica catalog.
reduceWorkflow(ADag, ReplicaCatalogBridge) - 
Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
Reduces the workflow on the basis of the existence of lfn's in the
 replica catalog.
reduceWorkflow(Graph, ReplicaCatalogBridge) - 
Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
Reduces the workflow on the basis of the existence of lfn's in the
 replica catalog.
ReductionEngine - Class in edu.isi.pegasus.planner.refiner
Reduction  engine for Planner 2.
ReductionEngine(ADag, PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.refiner.ReductionEngine
The constructor
REFINEMENT_CLUSTER - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
REFINEMENT_REDUCE - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
REFINEMENT_REGISTER - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
REFINEMENT_SITE_SELECT - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
REFINEMENT_STAGE - 
Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
Refiner - Interface in edu.isi.pegasus.planner.refiner
A first cut at a separate refiner interface.
Refiner - Interface in edu.isi.pegasus.planner.transfer
The refiner interface, that determines the functions that need to be
 implemented to add various types of transfer nodes to the workflow.
RefinerFactory - Class in edu.isi.pegasus.planner.transfer.refiner
The factory class that loads an appropriate Transfer Refiner class,
 as specified by the properties.
RefinerFactory() - 
Constructor for class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
 
refinerPreferenceForLocalTransferJobs(int) - 
Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
Boolean indicating Refiner preference for transfer jobs to run locally.
refinerPreferenceForLocalTransferJobs(int) - 
Method in interface edu.isi.pegasus.planner.transfer.Refiner
Boolean indicating Refiner preference for transfer jobs to run locally.
refinerPreferenceForTransferJobLocation() - 
Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
Boolean indicating whether the Transfer Refiner has a preference for
 where a transfer job is run.
refinerPreferenceForTransferJobLocation() - 
Method in interface edu.isi.pegasus.planner.transfer.Refiner
Boolean indicating whether the Transfer Refiner has a preference for
 where a transfer job is run.
Regex - Class in edu.isi.pegasus.planner.selector.replica
A replica selector that allows the user to specific regex expressions that
 can be used to rank various PFN's returned from the Replica Catalog for a 
 particular LFN.
Regex(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.selector.replica.Regex
The overloaded constructor, that is called by load method.
Regex.Rank - Class in edu.isi.pegasus.planner.selector.replica
A Data class that allows us to compile a regex expression
 and associate a rank value with it.
Regex.Rank(int, String) - 
Constructor for class edu.isi.pegasus.planner.selector.replica.Regex.Rank
The default constructor.
REGISTER_PREFIX - 
Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
The prefix for the jobs which register the newly materialized files in the
 Replica Catalog.
registerGridStart(String, GridStart) - 
Method in class edu.isi.pegasus.planner.code.GridStartFactory
Inserts an entry into the implementing class table.
registerPOSTScript(String, POSTScript) - 
Method in class edu.isi.pegasus.planner.code.GridStartFactory
Inserts an entry into the implementing class table.
REGISTRATION_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.refiner.Engine
 
registrationIntroducedFor(String, String) - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
registrationIntroducedFor
registrationIntroducedFor(String, String) - 
Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
Regular - Class in edu.isi.pegasus.planner.invocation
This class is the container for a regular file object.
Regular() - 
Constructor for class edu.isi.pegasus.planner.invocation.Regular
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
Regular(String) - 
Constructor for class edu.isi.pegasus.planner.invocation.Regular
Constructs a regular file.
relations - 
Variable in class edu.isi.pegasus.planner.classes.DagInfo
Captures the parent child relations making up the DAG.
RELEASE_ATTRIBUTE_KEY - 
Static variable in class edu.isi.pegasus.planner.invocation.Uname
The release attribute for the uname
releaseVersion - 
Variable in class edu.isi.pegasus.planner.classes.DagInfo
Identifies the release version of the VDS software that was
 used to generate the workflow.
REMOTE_INITIALDIR_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the key that sets a remote initial dir for a condor globus
 job.
REMOTE_PREFIX - 
Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
The prefix for all remote transfer jobs
REMOTE_SHOULD_TRANSFER_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The corresponding remote kye name that designates that files should be
 transferred via Condor File Transfer mechanism.
REMOTE_SHOULD_TRANSFER_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The corresponding remote kye name that designates that files should be
 transferred via Condor File Transfer mechanism.
REMOTE_UNIVERSE_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The constant for the remote universe key.
REMOTE_UNIVERSE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that denotes the remote condor universe key.
REMOTE_WHEN_TO_TRANSFER_OUTPUT_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The corresponding name of the remote key that designated when to transfer output.
REMOTE_WHEN_TO_TRANSFER_OUTPUT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The corresponding name of the remote key that designated when to transfer output.
RemoteTransfer - Class in edu.isi.pegasus.planner.transfer
A common class, that builds up the state from the properties to determine
 whether a user wants certain type of transfer jobs for particular site to
 run remotely.
RemoteTransfer() - 
Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer
The default constructor.
RemoteTransfer(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer
The overloaded constructor.
RemoteTransfer.TransferState - Class in edu.isi.pegasus.planner.transfer
An inner class that holds the state for a particular site,as to whether to
 execute transfers remotely or not.
RemoteTransfer.TransferState() - 
Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
The default constructor.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
Removes all mappings for an LFN from the replica catalog.
remove(Set) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
Removes all mappings for a set of LFNs.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
Removes all mappings for an LFN from the replica catalog.
remove(Set) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
Removes all mappings for a set of LFNs.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Removes all mappings for an LFN from the replica catalog.
remove(Set) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Removes all mappings for a set of LFNs.
remove(String) - 
Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
Removes all mappings for an LFN from the replica catalog.
remove(Set) - 
Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
Removes all mappings for a set of LFNs.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
Not yet implemented as yet.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
 
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.VORS
 
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
Not yet implemented as yet.
remove(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.XML3
Not yet implemented as yet.
remove(String) - 
Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
Removes a site catalog entry matching the the handle.
remove(Job) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Removes a particular job from the workflow.
remove(Job) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Removes a job from the dag/graph structure.
remove() - 
Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
Returns a false, as no removal
remove(String) - 
Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
Removes a node from the Graph.
remove() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
Method is not supported.
remove(String) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
Removes a node from the Graph.
remove() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
Removes a node from the graph.
REMOVE_DIR_EXECUTABLE_BASENAME - 
Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
The basename of the pegasus dirmanager  executable.
REMOVE_DIR_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
Constant suffix for the names of the remote directory nodes.
removeAllAttribute() - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Removes all attributes associated with a PFN.
removeAllJob() - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Removes all values from the job list.
removeAllStatCall() - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Removes all values from the stat list.
removeAttribute(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Removes a specific attribute.
removeByAttribute(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
Removes all entries from the replica catalog where the PFN attribute
 is found, and matches exactly the object value.
removeByAttribute(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
Removes all entries associated with a particular resource handle.
removeByAttribute(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
Removes all entries from the replica catalog where the PFN attribute
 is found, and matches exactly the object value.
removeByAttribute(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
Removes all entries associated with a particular resource handle.
removeByAttribute(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Removes all entries from the replica catalog where the PFN attribute
 is found, and matches exactly the object value.
removeByAttribute(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Removes all entries associated with a particular resource handle.
removeByAttribute(String, Object) - 
Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
Removes all entries from the replica catalog where the PFN attribute
 is found, and matches exactly the object value.
removeByAttribute(String) - 
Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
Removes all entries associated with a particular resource handle.
removeByLFN(String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of
 a particular type
removeByLFN(String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Delete all entries in the transformation catalog for a give logical tranformation and/or on a resource and/or of
 a particular type
removeByLFN(String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of
 a particular type
removeByLFN(String, String, String, String, TCType) - 
Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of
 a particular type
removeByPFN(String, String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Delete all entries in the transformation catalog for pair of logical and physical transformation.
removeByPFN(String, String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Delete all entries in the transformation catalog for pair of logical and physical transformation.
removeByPFN(String, String, String, String, String, TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Delete all entries in the transformation catalog for pair of logical and physical transformation.
removeByPFN(String, String, String, String, String, TCType) - 
Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
Delete all entries in the transformation catalog for pair of logical and physical transformation.
removeBySiteID(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Delete all entries on a particular resource from the transformation catalog.
removeBySiteID(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Delete all entries on a particular resource from the transformation catalog.
removeBySiteID(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Delete all entries on a particular resource from the transformation catalog.
removeBySiteID(String) - 
Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
Delete all entries on a particular resource from the transformation catalog.
removeBySysInfo(SysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Deletes entries from the catalog which have a particular system information.
removeBySysInfo(SysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Deletes entries from the catalog which have a particular system information.
removeBySysInfo(SysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Deletes entries from the catalog which have a particular system information.
removeBySysInfo(SysInfo) - 
Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
Deletes entries from the catalog which have a particular system information.
removeByType(TCType, String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
Delete a particular type of transformation, and/or on a particular resource
removeByType(TCType, String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
Delete a particular type of transformation, and/or on a particular resource
removeByType(TCType, String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Delete a particular type of transformation, and/or on a particular resource
removeByType(TCType, String) - 
Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
Delete a particular type of transformation, and/or on a particular resource
removeChild(GraphNode) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Removes a child linkage to the node.
removeDestURL() - 
Method in class edu.isi.pegasus.planner.classes.FileTransfer
Removes a single destination url associated with the transfer.
RemoveDirectory - Class in edu.isi.pegasus.planner.refiner
Ends up creating a cleanup dag that deletes the remote directories that
 were created by the create dir jobs.
RemoveDirectory(ADag, PegasusBag, String) - 
Constructor for class edu.isi.pegasus.planner.refiner.RemoveDirectory
The overloaded constructor that sets the dag for which we have to
 generated the cleanup dag for.
removeDirectoryKey(Job) - 
Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
Returns a boolean indicating whether to remove remote directory
 information or not from the job.
removeDirectoryKey(Job) - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
Returns a boolean indicating whether to remove remote directory
 information or not from the job.
removeFileServer(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
This is a soft state remove, that removes a file server from a particular
 pool entry.
removeFileURL(ReplicaCatalogEntry, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Default
A convenience function that determines whether we should be removing a
 file URL from replica selection or not.
removeFileURL(String, String, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Default
A convenience function that determines whether we should be removing a
 file URL from replica selection or not.
removeGridFtp(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
This is a soft state remove, that removes a gridftp server from a particular
 pool entry.
removeGridFtp(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Removes a grid ftp server from the soft state associated with the pool.
removeGridFtp(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
This is a soft state remove, that removes a gridftp server from a particular
 pool entry.
removeGridGateway(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
This is a soft state remove, that removes a GridGateway from a particular
 site.
removeGridGateway(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
This is a soft state remove, that removes a GridGateway from a particular
 site.
removeIn(Edge) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
remove a specified data dependency edge from this task
removeIPFilesForTransfer() - 
Method in class edu.isi.pegasus.planner.namespace.Condor
Remove the input files that were designated for transfer using
 Condor File Transfer Mechanism.
removeJob(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Removes a specific job from the job list.
removeJobManager(String, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
This is a soft state remove, that removes a jobmanager from a particular
 pool entry.
removeJobmanager(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
It removes a jobmanager from the pool.
removeJobManager(String, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
This is a soft state remove, that removes a jobmanager from a particular
 pool entry.
removeKey(Object) - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Removes the key from the namespace.
removeOut(Edge) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
remove a specified data dependency edge from this task
removeOutputFilesForTransfer() - 
Method in class edu.isi.pegasus.planner.namespace.Condor
Remove the output files that were designated for transfer using
 Condor File Transfer Mechanism.
removeParent(GraphNode) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Removes a parent linkage to the node.
removeSourceURL() - 
Method in class edu.isi.pegasus.planner.classes.FileTransfer
Removes a single source url associated with the transfer.
removeStatCall(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Removes a specific stat from the stat list.
removeURL(Map) - 
Method in class edu.isi.pegasus.planner.classes.FileTransfer
Removes a single url from the map passed.
renderedToExecutableForm() - 
Method in class edu.isi.pegasus.planner.classes.AggregatedJob
Returns a boolean indicating whether a job has been rendered to an executable
 form or not
replaceJobs() - 
Method in class edu.isi.pegasus.planner.cluster.Horizontal
The relations/edges are changed in local graph structure.
replacementKey(String) - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
Returns the replacement key that needs to be printed in .dag file in
 lieu of the key.
replacementValue(String) - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
Returns the replacement value that needs to be printed in .dag file for
 a key.
replaceProtocolFromURL(String) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Replaces the gsiftp URL scheme from the url, and replaces it with the
 symlink url scheme and returns in a new object.
replaceSourceProtocolFromURL(ReplicaCatalogEntry) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Replaces the SRM URL scheme from the url, and replaces it with the
 file url scheme and returns in a new object if replacement happens.
REPLICA_CATALOG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the replica catalog
REPLICA_CATALOG_URL_KEY - 
Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The name of the URL key for the replica catalog impelementer to be picked
 up.
REPLICA_REG_JOB - 
Static variable in class edu.isi.pegasus.planner.classes.Job
Denotes a job that registers in the replica mechanism the materialized
 files.
ReplicaCatalog - Interface in edu.isi.pegasus.planner.catalog
This interface describes a minimum set of essential tasks required
 from a replica catalog.
ReplicaCatalog - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes the Replica Catalog associated with the site.
ReplicaCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
The default constrcutor.
ReplicaCatalog(String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
The overloaded constructor.
ReplicaCatalogBridge - Class in edu.isi.pegasus.planner.refiner
This coordinates the look up to the Replica Location Service, to determine
 the logical to physical mappings.
ReplicaCatalogBridge(ADag, PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
The overloaded constructor.
ReplicaCatalogEntry - Class in edu.isi.pegasus.planner.catalog.replica
The entry is a high-level logical structure representing the physical
 filename, the site handle, and optional attributes related to the PFN
 as one entity.
ReplicaCatalogEntry() - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Default constructor for arrays.
ReplicaCatalogEntry(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Convenience constructor initializes the PFN.
ReplicaCatalogEntry(String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Convenience constructor initializes the PFN and the resource
 handle.
ReplicaCatalogEntry(String, Map) - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Standard constructor initializes the PFN and arbitrary attributes.
ReplicaCatalogException - Exception in edu.isi.pegasus.planner.catalog.replica
Class to notify of failures.
ReplicaCatalogException() - 
Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
 
ReplicaCatalogException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
Constructs a ReplicaCatalogException with the
 specified detailed message.
ReplicaCatalogException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
Constructs a ReplicaCatalogException with the
 specified detailed message and a cause.
ReplicaCatalogException(Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
Constructs a ReplicaCatalogException with the
 specified just a cause.
ReplicaFactory - Class in edu.isi.pegasus.planner.catalog.replica
This factory loads a replica catalog, as specified by the properties.
ReplicaFactory() - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
 
ReplicaLocation - Class in edu.isi.pegasus.planner.classes
A Data Class that associates a LFN with the PFN's.
ReplicaLocation() - 
Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
Default constructor.
ReplicaLocation(String, List) - 
Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
Overloaded constructor.
ReplicaLocation(String, Collection) - 
Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
Overloaded constructor.
replicaLocationIterator() - 
Method in class edu.isi.pegasus.planner.classes.ReplicaStore
Returns an iterator to the list of ReplicaLocation
 objects stored in the store.
ReplicaSelector - Interface in edu.isi.pegasus.planner.selector
A prototypical interface for a replica selector.
ReplicaSelectorFactory - Class in edu.isi.pegasus.planner.selector.replica
A factory class to load the appropriate type of Replica Selector, as
 specified by the user at runtime in properties.
ReplicaSelectorFactory() - 
Constructor for class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
 
ReplicaSelectorFactoryException - Exception in edu.isi.pegasus.planner.selector.replica
Class to notify of failures while instantiating ReplicaSelector implementations.
ReplicaSelectorFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
Constructs a ReplicaSelectorFactoryException with no detail
 message.
ReplicaSelectorFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
Constructs a ReplicaSelectorFactoryException with the specified detailed
 message.
ReplicaSelectorFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
Constructs a ReplicaSelectorFactoryException with the
 specified detailed message and a cause.
ReplicaSelectorFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
Constructs a ReplicaSelectorFactoryException with the
 specified detailed message and a cause.
ReplicaStore - Class in edu.isi.pegasus.planner.classes
A Replica Store that allows us to store the entries from a replica catalog.
ReplicaStore() - 
Constructor for class edu.isi.pegasus.planner.classes.ReplicaStore
Default constructor.
ReplicaStore(Map) - 
Constructor for class edu.isi.pegasus.planner.classes.ReplicaStore
Overloaded constructor.
REQUEST_CPUS_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The Condor Key designating the numnber of cpu's to request.
REQUEST_DISK_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The Condor Key designating the amount of disk to request.
REQUEST_ID - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
REQUEST_ID - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
REQUEST_MEMORY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The Condor Key designating the amount of memory to request.
requestInvalid() - 
Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
Checks if the request is invalid or not.
REQUIREMENTS_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that denotes the requirements of the job.
requiresToSetDirectory(Job) - 
Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
Returns a boolean indicating whether we need to set the directory for
 the job or not.
requiresToSetDirectory(Job) - 
Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
Returns a boolean indicating whether we need to set the directory for
 the job or not.
reset() - 
Method in interface edu.isi.pegasus.common.logging.Event
Reset the internal log message buffer associated with the event
reset() - 
Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
Reset the internal log message buffer associated with the event
reset() - 
Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
Reset the internal log message buffer associated with the event
reset() - 
Method in class edu.isi.pegasus.planner.classes.Notifications
Resets the internal invoke map.
reset() - 
Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
Resets the internal counters to zero.
reset() - 
Method in interface edu.isi.pegasus.planner.code.CodeGenerator
Resets the Code Generator implementation.
reset() - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Resets the Code Generator implementation.
reset() - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Resets the Code Generator implementation.
reset() - 
Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
Not implemented
reset() - 
Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
Not implemented
reset() - 
Method in class edu.isi.pegasus.planner.code.generator.Stampede
 
reset() - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
Resets the internal buffer
reset() - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
Resets the internal counters.
reset() - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
Resets the internal store.
reset() - 
Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
Resets the internal data structures.
resetCredentialTypes() - 
Method in class edu.isi.pegasus.planner.classes.Job
Resets the credential types required by a job.
resetNotifications() - 
Method in class edu.isi.pegasus.planner.classes.Job
Resets the notifications associated with the job
resetProfiles() - 
Method in class edu.isi.pegasus.planner.classes.Job
Resets all the profiles associated with the job.
resetStageInMap(Map<String, Bundle.PoolTransfer>, Implementation, Map<String, Job>, int, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
Resets the stage in map and adds the stage in jobs for each site per level.
resetStageInMaps() - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
Resets the stage in map and adds the stage in jobs for each site per level.
resetStageOutMap(Map<String, Bundle.PoolTransfer>, boolean) - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
Resets a single map
resetStageOutMaps() - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
Resets the local and remote stage out maps.
resetStores() - 
Method in class edu.isi.pegasus.planner.classes.ADag
Resets the replica and transformation stores;
resource - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
resource - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
RESOURCE_AD_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The class ad to store the execution pool at which the job is run.
RESOURCE_DESCRIPTION_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
RESOURCE_DESCRIPTION_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
RESOURCE_GROUP_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
 
RESOURCE_HANDLE - 
Static variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
The (reserved) attribute name used for the resource handle.
RESOURCE_ID_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
RESOURCE_ID_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
RESOURCE_LIST_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
RESOURCE_NAME_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
RESOURCE_NAME_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
RESOURCE_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
 
resourceDescription - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
resourceID - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
resourceList - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
 
resourceName - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
Restricted - Class in edu.isi.pegasus.planner.selector.replica
A replica selector, that allows the user to specify good sites and bad sites
 for staging in data to a compute site.
Restricted(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.selector.replica.Restricted
The overloaded constructor, that is called by load method.
retrieveFromCache(String) - 
Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
Retrieves a location from the cache table, that contains the contents
 of the cache files specified at runtime.
retrieveProfilesFromProperties() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Retrieves profiles from the properties
retrieveProfilesFromProperties(CommonProperties) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Retrieves profiles from the properties
RETRY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that determines how many times DAGMAN should be
 retrying the job.
RETRY_LOGICAL_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
The planner utility that needs to be called as a prescript.
RETRY_LOGICAL_NAME - 
Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The planner utility that needs to be called as a prescript.
RFT - 
Variable in class edu.isi.pegasus.planner.provisioner.Estimator
 
RFT - 
Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
 
RM - Class in edu.isi.pegasus.planner.refiner.cleanup
Use's RM to do removal of the files on the remote sites.
RM() - 
Constructor for class edu.isi.pegasus.planner.refiner.cleanup.RM
The default constructor.
ROOT_UUID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The key for UUID of the workflow.
ROOT_WF_UUID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The classad for the root workflow uuid
ROOT_WORKFLOW_UUID_PROPERTY_KEY - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
The property key designated the root workflow uuid.
RoundRobin - Class in edu.isi.pegasus.planner.selector.site
This ends up scheduling the jobs in a round robin manner.
RoundRobin() - 
Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin
The default constructor.
RoundRobin - Class in edu.isi.pegasus.planner.selector.transformation
This implementation of the Selector select a transformation from a list in a round robin fashion.
RoundRobin() - 
Constructor for class edu.isi.pegasus.planner.selector.transformation.RoundRobin
 
RoundRobin.NameValue - Class in edu.isi.pegasus.planner.selector.site
A inner name value class that associates a string with an int value.
RoundRobin.NameValue() - 
Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
The default constructor  which initialises the class member variables.
RoundRobin.NameValue(String, int) - 
Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
Initialises the class member variables to the values passed in the
 arguments.
run() - 
Method in class edu.isi.pegasus.common.util.StreamGobbler
The main method of the gobbler, that does all the work.
run() - 
Method in class edu.isi.pegasus.planner.invocation.SimpleServerThread
 
RunDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.common
A filename filter for identifying the run directory
RunDirectoryFilenameFilter() - 
Constructor for class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
 
RunDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.parser.pdax
A filename filter for identifying the run directory
RunDirectoryFilenameFilter() - 
Constructor for class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
 
runInWorkDirectory() - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns whether a job should be run in the work directory or not.
RUNNING_JOBS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the
 number of running jobs attribute.
runPlanner() - 
Method in class edu.isi.pegasus.planner.refiner.MainEngine
The main function which calls the other engines and does the necessary work.
RUNTIME_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the profile key when associated with a transformation in the
 transformation catalog gives expected runtime in seconds.
RUNTIME_PROFILE_KEY - 
Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
The pegasus profile key that gives us the expected runtime.
runTPTOnRemoteSite(String, int) - 
Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
Returns whether the third party transfers for a particular site are to
 be run on the remote site or the submit host.
runTPTOnRemoteSite(String, int) - 
Method in interface edu.isi.pegasus.planner.transfer.Refiner
Returns whether the third party transfers for a particular site are to
 be run on the remote site or the submit host.
runTransferOnLocalSite(Refiner, String, String, int) - 
Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
Returns whether to run a transfer job on local site or not.
runTransferOnLocalSite(String, String, int) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Returns whether to run a transfer job on local site or not.
runTransferRemotely(String, int) - 
Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
Returns whether a Site prefers transfers to be run on it i.e remote transfers
 enabled.
runTransferRemotely(String, int) - 
Method in interface edu.isi.pegasus.planner.transfer.Refiner
Returns whether a Site prefers transfers to be run on it i.e remote transfers
 enabled.



S

S3_IMPLEMENTING_CLASS - 
Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
 
S3CFG - Class in edu.isi.pegasus.common.credential.impl
A convenience class that allows us to determine the path to the user s3cfg file.
S3CFG() - 
Constructor for class edu.isi.pegasus.common.credential.impl.S3CFG
The default constructor.
S3CFG - 
Static variable in class edu.isi.pegasus.planner.namespace.ENV
The name of the environment variable that specifies the s3cfg path
S3CFG_FILE_VARIABLE - 
Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
The name of the environment variable that specifies the path to the
 s3cfg file.
sanitize(List) - 
Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
Sanitizes a tuple list .
sanitize(ReplicaCatalogEntry) - 
Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
Sanitizes a tuple .
sanitizePath(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
A small utility method that santizes the url, converting it from
 relative to absolute.
sanitizePathForProperty(Properties, String) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Santizes the value in the properties .
SANITY_CHECK_ERROR_MESSAGE_PREFIX - 
Static variable in class edu.isi.pegasus.planner.selector.replica.Local
Sanity Check Error Message.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.client.CPlanner
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.client.RankDAX
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.common.PegasusProperties
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.partitioner.PartitionAndPlan
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheck(File) - 
Static method in class edu.isi.pegasus.planner.ranking.GetDAX
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheckOnDirectory(File) - 
Static method in class edu.isi.pegasus.common.logging.LogManager
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheckOnFile(File) - 
Static method in class edu.isi.pegasus.common.logging.LogManager
Checks the destination location for existence, if it can
 be created, if it is writable etc.
sanityCheckOnProperties() - 
Method in class edu.isi.pegasus.planner.client.Executable
Does a sanity check on the properties to make sure that all the 
 required properties are loaded.
sanityCheckOnVersion(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
Sanity check on the version that this parser works on.
SC_XML3_FILE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
SC_XML_FILE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
ScannerException - Exception in edu.isi.pegasus.planner.parser
This class is used to signal errors while scanning or parsing.
ScannerException(LineNumberReader, String) - 
Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
 
ScannerException(int, String) - 
Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
 
SCClient - Class in edu.isi.pegasus.planner.client
A client to convert site catalog between different formats.
SCClient() - 
Constructor for class edu.isi.pegasus.planner.client.SCClient
The default constructor.
schedule(ADag, List) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
Schedules the workflow using the heft.
schedule(Graph, List, String) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
Schedules the workflow according to the HEFT algorithm.
SCHEDULED_SITE - 
Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
The site where the job is scheduled.
scheduleJob(String, long, long) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
Schedules a job to a site.
scheduleJob(long, long) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Processor
Schedules a job on to a processor.
scheduleJob(long, long) - 
Method in class edu.isi.pegasus.planner.selector.site.heft.Site
Schedules a job to the site.
scheduleJobs(ADag, List) - 
Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
It schedules a list of jobs on the execution pools by calling out to the
 site selector specified.
SCHEDULER_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
SCHEDULER_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The condor universe key value for scheduler universe.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
The "not-so-official" location URL of the DAX schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
The "not-so-official" location URL of the VDLx schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.dax.ADAG
The "not-so-official" location URL of the DAX schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
The "not-so-official" location URL of the invocation record definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
The "not-so-official" location URL of the VDLx schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
The "not-so-official" location URL of the DAX schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
The "not-so-official" location URL of the Site Catalog Schema.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
The "not-so-official" location URL of the DAX schema definition.
SCHEMA_LOCATION - 
Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
The "not-so-official" location URL of the Site Catalog Schema.
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
The "official" namespace URI of the site catalog schema.
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
uri namespace
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.client.DAXValidator
URI namespace for DAX schema.
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.dax.ADAG
The "official" namespace URI of the site catalog schema.
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
The "official" namespace URI of the invocation record schema.
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
uri namespace
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
URI namespace
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
uri namespace
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
URI namespace
SCHEMA_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogParser
uri namespace
SCHEMA_NAMESPACE_XSI - 
Static variable in class edu.isi.pegasus.planner.dax.ADAG
XSI SCHEMA NAMESPACE
SCHEMA_VERSION - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
The version to report.
SCHEMA_VERSION - 
Static variable in class edu.isi.pegasus.planner.dax.ADAG
The version to report.
scrapeSite(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.SiteScrapper
Scarps a web site and stores it in a file
searchMDS(LdapContext, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Still Thinking how to eable this option.
secondPass() - 
Method in class edu.isi.pegasus.planner.refiner.ReductionEngine
In the second pass we find all the
 parents of the nodes which have been
 found to be in the RC.
SEED - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SEED_ID - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SEED_ID - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SEED_NAME - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SEED_NAME - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
selectFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
Selects a random file server and returns it.
selectGridFTP(boolean) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns a gridftp server from the list of gridftp servers associated with
 the site.
selectGridFtp(ArrayList) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
Return a random gridftp url from the list of gridftp url's.
selectGridGateway(GridGateway.JOB_TYPE) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Selects a grid gateway object corresponding to a job type.
selectJobManager(String, boolean) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns a selected jobmanager corresponding to a particular VDS
 universe.
selectLocalFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
Selects a  FileServer associated with the Local Directory.
selectLRC(boolean) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns an LRC from the list of LRCs associated with the site.
selectLRC(ArrayList) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
Return a random lrc url from the list of lrc url's.
SELECTOR - 
Static variable in class edu.isi.pegasus.planner.classes.Profile
 
Selector - Class in edu.isi.pegasus.planner.namespace
The selector namespace object.
Selector() - 
Constructor for class edu.isi.pegasus.planner.namespace.Selector
The default constructor.
Selector(Map) - 
Constructor for class edu.isi.pegasus.planner.namespace.Selector
The overloaded constructor.
selectRandomSite(List) - 
Method in class edu.isi.pegasus.planner.selector.site.Random
The random selection that selects randomly one of the records returned by
 the transformation catalog.
selectReplica(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Default
This chooses a location amongst all the locations returned by the replica
 location service.
selectReplica(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Local
Selects a random replica from all the replica's that have their
 site handle set to local and the pfn's start with a file url scheme.
selectReplica(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Regex
This chooses a location amongst all the locations returned by the replica
 location service.
selectReplica(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Restricted
This chooses a location amongst all the locations returned by the replica
 location service.
selectReplica(ReplicaLocation, String, boolean) - 
Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
Selects a single replica amongst all the replicas returned by the implementing
 Replica Mechanism.
selectReplicaCatalog() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Selects a Random ReplicaCatalog.
selectReplicas(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Default
This chooses a location amongst all the locations returned by the
 Replica Mechanism.
selectReplicas(ReplicaLocation, String, boolean) - 
Method in class edu.isi.pegasus.planner.selector.replica.Local
This chooses a location amongst all the locations returned by the
 Replica Mechanism.
selectReplicas(ReplicaLocation, String, boolean) - 
Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
Selects a replica amongst all the replicas returned by the implementing
 Replica Mechanism.
selectScratchLocalFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Selects a  FileServer associated with the Local Directory on
 the Scratch system.
selectScratchLocalFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Selects a  FileServer associated with the Local Directory on
 the Scratch system.
selectScratchSharedFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Selects a  FileServer associated with the Shared Directory on
 the Scratch system.
selectScratchSharedFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Selects a  FileServer associated with the Shared Directory on
 the Scratch system.
selectSharedFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
Selects a  FileServer associated with the Shared Directory.
selectStorageFileServerForStageout() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
A convenience method that returns a file server to be used for stageout.
selectStorageFileServerForStageout() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
A convenience method that selects a file server for staging the data out to 
 a site.
selectStorageLocalFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Selects a  FileServer associated with the Local Directory on
 the Storage system.
selectStorageLocalFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Selects a  FileServer associated with the Local Directory on
 the Storage system.
selectStorageSharedFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Selects a  FileServer associated with the Shared Directory on
 the Storage system.
selectStorageSharedFileServer() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Selects a  FileServer associated with the Shared Directory on
 the Storage system.
selectTCEntry(List, Job, String) - 
Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
Calls out to  the transformation selector to select an entry from a list
 of valid transformation catalog entries.
selectWorkdir(WorkDir) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
Returns the path to the execution mount point (The Workdir).
Separator - Class in edu.isi.pegasus.common.util
This class solely defines the separators used in the textual in-
 and output between namespace, name and version(s).
Separator() - 
Constructor for class edu.isi.pegasus.common.util.Separator
 
Separator2Test - Class in edu.isi.pegasus.common.util
This is the test program for the Separator class.
Separator2Test() - 
Constructor for class edu.isi.pegasus.common.util.Separator2Test
 
SeparatorTest - Class in edu.isi.pegasus.common.util
This is the test program for the Separator class.
SeparatorTest() - 
Constructor for class edu.isi.pegasus.common.util.SeparatorTest
 
SEQ_EXEC_CLASS - 
Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
The name of the class in this package, that corresponds to seqexec.
SeqExec - Class in edu.isi.pegasus.planner.cluster.aggregator
This class aggregates the smaller jobs in a manner such that
 they are launched at remote end, sequentially on a single node using
 seqexec.
SeqExec() - 
Constructor for class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
The default constructor.
SEQEXEC_INDEX - 
Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
The index in constant arrays for SeqExec
SEQEXEC_PROGRESS_REPORT_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
The suffix to be applied to seqexec progress report file.
SERVICE_DESCRIPTION_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SERVICE_DESCRIPTION_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
SERVICE_ID_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SERVICE_ID_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
SERVICE_LIST_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SERVICE_NAME_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SERVICE_NAME_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
SERVICE_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
 
SERVICE_URI_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SERVICE_URI_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
serviceDescription - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
serviceID - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
serviceList - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
serviceName - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
serviceURI - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
set(String, boolean) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
Sets a feature while capturing failed features right here.
set(String, boolean) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Sets a feature while capturing failed features right here.
set(int) - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
Sets a type of transfer to be third party.
set(int) - 
Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
Sets a type of transfer to be third party.
SET_XBIT_PREFIX - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The prefix for the jobs which are added to set X bit for the staged
 executables.
setAbortOnFirstJobFailure(boolean) - 
Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
Setter method to indicate , failure on first consitutent job should
 result in the abort of the whole aggregated job.
setAbortOnFirstJobFailure(boolean) - 
Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
Setter method to indicate , failure on first consitutent job should
 result in the abort of the whole aggregated job.
setAbortOnFirstJobFailure(boolean) - 
Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
Setter method to indicate , failure on first consitutent job should
 result in the abort of the whole aggregated job.
setAbstractChildID(String) - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Sets the abstract child id associated with the edge.
setAbstractParentID(String) - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Sets the abstract parent id associated with the edge.
setAccessTime(Date) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setApp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setApp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setApp_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setApp_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setArch(Arch) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Sets the architecture of the system.
setArchitecture(SysInfo.Architecture) - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Sets the architecture of the site.
setArchitecture(SysInfo.Architecture) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the architecture of the nodes that this grid gateway talks to.
setArchitecture(SysInfo.Architecture) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the architecture of the site.
setArchitecture(Executable.ARCH) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the architecture the executable is compiled for
setArchitecture(Architecture) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setArchMode(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setArguments(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the argument string with which the job has to be invoked.
setArguments(Arguments) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setAssociatedJob(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Sets the associated job for which the reading was taken.
setAttribute(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Adds a new or overwrites an existing attribute.
setAttribute(Map) - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Replaces all existing attributes with new attributes.
setAuthentication(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the authenticate flag to the value passed.
setBag(Bag) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Sets the bag of objects associated with the node.
setBasenamePrefix(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the basename prefix for the per workflow files.
setBaseSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the submit directory for the workflow.
setBaseSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the path to the base submit directory.
setBaseSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the base submitdirectory where the submit files are to be
 generated.
setBlocks(long) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setBlockSize(long) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setCacheFiles(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the caches files.
setCacheFiles(Set) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the caches files.
setCallback(Callback) - 
Method in class edu.isi.pegasus.planner.parser.PDAXParser
Sets the callback handler for this parsing instance.
setCallback(Callback) - 
Method in class edu.isi.pegasus.planner.visualize.KickstartParser
Sets the callback to which to callout to while parsing a kickstart
 record.
setChild(String) - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Sets the child of the edge.
setChildren(List) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
It sets the children to the node.
setClassName(String) - 
Method in class edu.isi.pegasus.common.util.DynamicLoader
Sets the fully-qualified class name to load.
setCleanup(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the cleanup option for the planner.
setCleanupFlag(boolean) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Sets boolean indicating that space denoted is the amount cleaned.
setClusteringTechnique(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the clustering option.
setColor(int) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Sets the color of the node to the color specified
setContact(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the contact string for the Grid gateway
setContent(GraphNodeContent) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Sets the content associated with the node.
setCoreFlag(boolean) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Accessor.
setCost(long) - 
Method in class edu.isi.pegasus.planner.provisioner.Edge
 
setCount(int) - 
Method in class edu.isi.pegasus.planner.invocation.Fifo
Accessor.
setCreationTime(Date) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setDAGFile(String) - 
Method in class edu.isi.pegasus.planner.classes.DAGJob
Sets the DAG file
setDAGLFN(String) - 
Method in class edu.isi.pegasus.planner.classes.DAGJob
Sets the DAG file LFN
setData(String) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setData(Data) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Conversion accessor.
setData_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setData_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setData_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setData_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setDateFormat(SimpleDateFormat) - 
Method in class edu.isi.pegasus.common.util.Currently
Accessor: Sets the default timestamp format for all queues.
setDateFormat(String) - 
Method in class edu.isi.pegasus.common.util.Currently
Accessor: Sets the default timestamp format for all queues.
setDAX(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the path to the DAX.
setDAX(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the DAX that has to be worked on by the planner.
setDAXCallback(Callback) - 
Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser
Set the DAXCallback for the parser to call out to.
setDAXCallback(Callback) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
Set the DAXCallback for the parser to call out to.
setDAXCallback(Callback) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
Set the DAXCallback for the parser to call out to.
setDAXFile(String) - 
Method in class edu.isi.pegasus.planner.classes.DAXJob
Sets the DAX file
setDAXLFN(String) - 
Method in class edu.isi.pegasus.planner.classes.DAXJob
Sets the DAX file LFN
setDAXMTime(File) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Sets the mtime (last modified time) for the DAX.
setDAXMTime(String) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Sets the mtime (last modified time) for the DAX.
setDAXVersion(String) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Sets the dax version
setDepth(int) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
Set the depth
setDepth(int) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
Sets the depth associated with the node.
setDepth_ResMap(List) - 
Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
A BFS implementation to set depth value (roots have depth 1) and also
 to populate mResMap ,mResMapLeaves,mResMapRoots which contains all the
 jobs that are assigned to a particular resource
setDerivation(String, String, String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the various attributes of underlying derivation.
setDerivation(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setDescriptor(int) - 
Method in class edu.isi.pegasus.planner.invocation.Descriptor
Accessor.
setDescriptor(int) - 
Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor
Accessor: Sets the descriptor number of a file object.
setDescriptor(int) - 
Method in class edu.isi.pegasus.planner.invocation.Temporary
Accessor.
setDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.DAGJob
Sets the directory in which the dag needs to execute.
setDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.DAXJob
Sets the directory in which the dag needs to execute.
setDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Setter method to set the name of the job.
setDirectory(String) - 
Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
Sets the directory where the stdin files are to be generated.
setDirectory(String) - 
Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
Sets the directory where the stdin files are to be generated.
setDocumentLocator(Locator) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
setDocumentLocator(Locator) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Obtains the document locator from the parser.
setDocumentLocator(Locator) - 
Method in class edu.isi.pegasus.planner.parser.Parser
Overrides the empty implementation provided by Default Handler and sets
 the locator variable for the locator.
setDomainName(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setDuration(double) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setDuration(double) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setDVName(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the derivation name of the underlying derivation.
setDVNamespace(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the derivation namespace to be associated with the job.
setDVVersion(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the version of the underlying derivation.
setElementRelation(String, Object, Object) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
This method sets the relations between the currently finished XML
 element(child) and its containing element in terms of Java objects.
setElementRelation(char, Invocation, Invocation) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
This method sets the relations between the currently finished XML
 element and its containing element in terms of Java objects.
setElementRelation(String, Object, Object) - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
This method sets the relations between the currently finished XML
 element and its containing element in terms of Java objects.
setElementRelation(String, Object, Object) - 
Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
This method sets the relations between the currently finished XML
 element(child) and its containing element in terms of Java objects.
setEndTime(Date) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Set the end time for the planning operation.
setEnvironment(Environment) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setError(int) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
Accessor.
setError(int) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setErrorWriter(String) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Certains levels like FATAL, ERROR and WARN can be set to log to a
 different stream, than the default stream used for writing other messages.
setErrorWriter(OutputStream) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Certains levels like FATAL, ERROR and WARN can be set to log to a
 different stream, than the default stream used for writing other messages.
setEvent(String, String, String) - 
Method in interface edu.isi.pegasus.common.logging.Event
Set the event that is to be associated with the log messages.
setEvent(String, Map<String, String>) - 
Method in interface edu.isi.pegasus.common.logging.Event
Adds the event that is to be associated with the log messages onto an
 internal stack
setEvent(String, String, String) - 
Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
Set the event that is to be associated with the log messages.
setEvent(String, Map<String, String>) - 
Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
Adds the event that is to be associated with the log messages onto an
 internal stack
setEvent(String, String, String) - 
Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
Set the event that is to be associated with the log messages.
setEvent(String, Map<String, String>) - 
Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
Adds the event that is to be associated with the log messages onto an
 internal stack
setExec_jm(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setExec_jm(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setExecutable(boolean) - 
Method in class edu.isi.pegasus.planner.dax.File
Mark the file as executable.
setExecutable() - 
Method in class edu.isi.pegasus.planner.dax.File
Mart the file as executable.
SetExecutable() - 
Method in class edu.isi.pegasus.planner.dax.File
Deprecated.  
setExecutable(String) - 
Method in class edu.isi.pegasus.planner.invocation.Arguments
Accessor.
setExecutable(String) - 
Method in class edu.isi.pegasus.planner.invocation.CommandLine
Accessor.
setExecutable(StatCall) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setExecutableForTransfer() - 
Method in class edu.isi.pegasus.planner.namespace.Condor
Adds the executable for transfer via the condor file transfer mechanism.
setExecutableStagingForJob(boolean) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the executable staging flag in the job to the value passed.
setExecutionSites(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the names of the execution sites where the concrete workflow can
 be run.
setExecutionSites(Collection) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the names of the execution sites where the concrete workflow can
 be run.
setExecutionSites(Collection) - 
Method in class edu.isi.pegasus.planner.common.UserOptions
Sets the execution sites.
setExitCode(short) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
Accessor.
setFile(File) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setFilename(String) - 
Method in interface edu.isi.pegasus.planner.invocation.HasFilename
Accessor: Sets the name of an file object.
setFilename(String) - 
Method in class edu.isi.pegasus.planner.invocation.Regular
Accessor.
setFilename(String) - 
Method in class edu.isi.pegasus.planner.invocation.Temporary
Accessor.
setFileOptional() - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the optionalflag denoting the file to be optional to true.
setFileServers(List<FileServer>) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
Sets the list of FileServers that can access this directory.
setFlowTimestamp(String) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Sets the flow timestamp for the workflow.
setForce(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the force option for the planner.
setForceReplan(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the force replan option
setForPlannerUse(PegasusProperties, PlannerOptions) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
A setter method that is to be set to use getWorkDirectory functions, correctly.
setFreeSize(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
Sets the free directory size
setFrom(Node) - 
Method in class edu.isi.pegasus.planner.provisioner.Edge
set the 'from' task
setGatekeeper(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setGatekeeper(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setGatekeeper(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setGID(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setGID(int) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setGk_port(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setGk_port(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setGlibc(String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Sets the glibc version on the site.
setGlibc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the glibc version on the site.
setGlibc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the glibc version on the site.
setGlibc(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Sets the glibc version of the system
setGlibc(String) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the glibc this executable is compiled for
setGlobus_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setGlobus_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setGrid(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setGrid_services(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setGrid_services(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setGridFTPBandwidthInfo(GridFTPBandwidth) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
It fills information in the mBandWidths ArrayList.
setGroup(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setGroup(String) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setGsiftp_port(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setGsiftp_port(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setGsiftp_server(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setHandle(String) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setHeadNodeFS(HeadNodeFS) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the headnode filesystem.
setHelp(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the help option for the planner.
setHostAddress(InetAddress) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setHostname(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setID(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setID(String) - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
It sets the id of the partition.
setIdleNodes(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the number of idle nodes that this grid gateway talks to.
setIdleNodes(int) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the number of idle nodes that this grid gateway talks to.
setIndex(int) - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
It sets the index associated with this partition to the value passed.
setInfo(int, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
This method sets the info about gridftpbw based on the gridftpbwkey
setInfo(int, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
Sets an attribute associated with the grid ftp server.
setInfo(int, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
Sets an attribute associated with the jobmanager.
setInfo(int, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Sets an attribute associated with the remote site.
setInfo(int, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
Sets an attribute associated with the work directory.
setInheritedRCFiles(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the inherited RC Files.
setInheritedRCFiles(Set) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the inherited RC Files.
setINode(long) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setInputBlocks(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setInputFiles(Set) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the input files associated with the job.
setInputSize(long) - 
Method in class edu.isi.pegasus.planner.invocation.Fifo
Accessor.
setInstalled() - 
Method in class edu.isi.pegasus.planner.dax.Executable
set the installed flag on the executable.
setInstalled(boolean) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the installed flag on the executable.
setInterface(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setInternalMountPoint(InternalMountPoint) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryType
Sets the internal mount point for the directory.
setInvoluntarySwitches(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of involuntary context switches.
setJob(int, Job) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Overwrites a job at a certain position.
setJob(Collection) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Overwrites internal list with an external list
 representing jobs.
setJobAggregator(JobAggregator) - 
Method in class edu.isi.pegasus.planner.classes.AggregatedJob
Sets the JobAggregator that created this aggregated job.
setJobManager(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the remote jobmanager on which the job has to run.
setJobName(String) - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
It sets the name of the job that is associated with the profiles contained
 in this placeholder.
setJobName(String) - 
Method in interface edu.isi.pegasus.planner.visualize.Measurement
Sets the job for which the measurement was taken.
setJobName(String) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
Sets the job for which the measurement was taken.
setJobnamePrefix(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the job prefix to be used while constructing the job names.
setJobStatus(JobStatus) - 
Method in class edu.isi.pegasus.planner.invocation.Status
Accessor.
setJobType(GridGateway.JOB_TYPE) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the type of jobs that run via this grid gateway.
setJobType(int) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the type of the job.
setKey(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
Returns the connection key.
setKey(String) - 
Method in class edu.isi.pegasus.planner.classes.NameValue
Sets the key associated with this tuple.
setKey(String) - 
Method in class edu.isi.pegasus.planner.invocation.EnvEntry
Accessor.
setLabel(String) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Sets the label for the workflow.
setLabel(String) - 
Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
Sets the DAXlabel.
setLabel(String) - 
Method in class edu.isi.pegasus.planner.dax.Parent
 
setLabelKey(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
Set the profile key that is to be used to pick up the labels.
setLabelKey(String) - 
Static method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
Sets the label key that is to be associated with the bag.
setLast_Test_Date(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setLdapConnectionEnv(String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
Enables a user to set new or overide existing connection settings to the MDS.
setLdapSearchConstraints() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
 
setLevel(Level) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets the debug level.
setLevel(int) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets the debug level.
setLevel(int, boolean) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets the debug level.
setLevel(Level) - 
Method in class edu.isi.pegasus.common.logging.logger.Log4j
Sets the debug level.
setLevel(int) - 
Method in class edu.isi.pegasus.common.logging.logger.Log4j
Sets the debug level.
setLevel(int, boolean) - 
Method in class edu.isi.pegasus.common.logging.logger.Log4j
Sets the debug level.
setLevel(Level, boolean) - 
Method in class edu.isi.pegasus.common.logging.logger.Log4j
Sets the debug level.
setLevel(Level) - 
Method in class edu.isi.pegasus.common.logging.LogManager
Sets the debug level.
setLevel(int) - 
Method in class edu.isi.pegasus.common.logging.LogManager
Sets the debug level.
setLevel(int, boolean) - 
Method in class edu.isi.pegasus.common.logging.LogManager
Sets the debug level.
setLevel(int) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the level for the job.
setLevel(int) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Sets a logging level.
setLFN(String) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
It sets the logical filename of the file that is being transferred.
setLFN(String) - 
Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
Sets the LFN.
setLFN(String) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setLink(File.LINK) - 
Method in class edu.isi.pegasus.planner.dax.File
Set the file linkage
setLinkage(PegasusFile.LINKAGE) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the linkage for the file during parsing.
setLinkCount(long) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setLocalDirectory(LocalDirectory) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
Sets the local directory.
setLoggingLevel(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the logging level for logging of messages.
setLogicalID(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Setter method to set the logical id of the job.
setLogicalName(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the logical mName of the transformation.
setLogicalNamespace(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the logical mNamespace of the transformation.
setLogicalTransformation(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the logical transformation with a fully qualified tranformation String of the format NS::NAME:Ver
setLogicalTransformation(String, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the logical transformation by providing the mNamespace, mName and mVersion as seperate strings.
setLogicalVersion(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the logical mVersion of the transformation.
setMachine(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setMachine(Machine) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setMachineSpecific(MachineSpecific) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Sets the machine-specific grouping element.
setMajor(int) - 
Method in class VersionTask
Accessor to set the major version number.
setMajorFaults(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of major page faults.
setMaximumRSS(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setMeasurement(Measurement, int) - 
Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
Adds a measurement for a particular event type.
setMegaDAGMode(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the megadag generation option
setMinor(int) - 
Method in class VersionTask
Accessor to set the minor version number.
setMinorFaults(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of minor faults.
setMode(int) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setModificationTime(Date) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setMonitoring(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the flag to denote whether we want to monitor the workflow or not.
setMountPoint(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
Returns the mount point.
setMountPoint(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
Sets the mount point for the file system type.
setName(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setName(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Setter method to set the name of the job.
setName(String) - 
Method in class edu.isi.pegasus.planner.dax.Parent
 
setName(String) - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
It sets the partition name to the value passed.
setName(String) - 
Method in class edu.isi.pegasus.planner.ranking.Ranking
Sets the name.
setNextException(CatalogException) - 
Method in exception edu.isi.pegasus.planner.catalog.CatalogException
Adds an CatalogException object to the end of
 the chain.
setNodeLabel(String) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setNodeName(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setNonThirdPartySite(String) - 
Method in class edu.isi.pegasus.planner.classes.TransferJob
Sets the non third party site for the transfer job.
setNumberOfRescueTries(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the number of times to try for rescue dag submission.
setNumberOfRescueTries(int) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the number of times to try for rescue dag submission.
setOptional(boolean) - 
Method in class edu.isi.pegasus.planner.dax.File
Set the optional flag on the file.
setOptionalArg(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the flag to denote that the optional argument for the random was
 specified.
setOriginalArgString(String[]) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the argument string of how planner was invoked.
setOS(SysInfo.OS) - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Sets the OS of the site.
setOS(SysInfo.OS) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the OS of the nodes that this grid gateway talks to.
setOS(SysInfo.OS) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the OS of the site.
setOs(Os) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Sets the Os of the sytem.
setOS(Executable.OS) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the OS the executable is compiled for
setOsg_grid(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setOsg_grid(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setOSRelease(String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Sets the OS release of the site.
setOSRelease(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the OS release of the site.
setOSRelease(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the OS release of the site.
setOSRelease(String) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the osrelease the executable is compiled for
setOSVersion(String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Sets the OS version of the site.
setOSVersion(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the OS version of the site.
setOSVersion(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the OS version of the site.
setOsversion(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Sets the Os version of the system.
setOSVersion(String) - 
Method in class edu.isi.pegasus.planner.dax.Executable
Set the osversion the executable is compiled for
setOutputBlocks(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setOutputFiles(Set) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the output files associated with the job.
setOutputSite(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the output site specified by the user.
setOutputSize(long) - 
Method in class edu.isi.pegasus.planner.invocation.Fifo
Accessor.
setOutputWriter(String) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets the writer associated with the class to the one specified for all
 type of messages other than error messages.
setOutputWriter(OutputStream) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets the writer associated with the class to the one specified for all
 type of messages other than error messages.
setPageSize(long) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Sets the page size.
setParent(String) - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Sets the parent of the edge.
setParents(List) - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
It adds the parents to the node.
setParserFeature(String, boolean) - 
Method in class edu.isi.pegasus.planner.parser.Parser
Sets a parser feature, and fails here enabling us to set all the following
 features.
setPartitioningType(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the partitioning type in case of partition and plan.
setPartitionName(String) - 
Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
It sets the name of the partition in the dax that is generated.
setPartOfDeferredRun(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the flag to denote that the run is part of a larger deferred run.
setPatch(int) - 
Method in class VersionTask
Accessor to set the patch-level number.
setPDAX(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the PDAX that has to be worked on by the planner.
setPFN(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Accessor: Sets a new PFN to remember.
setPhysicalMemory(long) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setPhysicalTransformation(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the physical location of the transformation.
setPID(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setPID(int) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setPosition(int) - 
Method in class edu.isi.pegasus.planner.invocation.ArgEntry
Accessor.
setPostSCRIPTDebugON() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to turn debug on or not for exitcode.
setPreScript(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
It sets the prescript for the job.
setPreScript(String, String) - 
Method in class edu.isi.pegasus.planner.classes.Job
It sets the prescript for the job.
setPrescript(Job, String, String) - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Sets the prescript that ends up calling to the default wrapper that
 introduces retry into Pegasus for a particular job.
setPrescript(Job, String, String, String, String, String) - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Sets the prescript that ends up calling to the default wrapper that
 introduces retry into Pegasus for a particular job.
setProfile(String, String, String) - 
Method in class edu.isi.pegasus.planner.classes.Profile
This method allows to set the namespace , key and value of the Profile.
setProfileKey(String) - 
Method in class edu.isi.pegasus.planner.classes.Profile
Sets the profile key
setProfileNamespace(String) - 
Method in class edu.isi.pegasus.planner.classes.Profile
Sets  the NameSpace of the Profile
setProfiles(Profiles) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
Sets the profiles associated with the file server.
setProfiles(Profiles) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Sets the profiles associated with the file server.
setProfiles(Profiles) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the profiles associated with the file server.
setProfiles(Profiles) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Sets the profiles associated with the file server.
setProfileValue(String) - 
Method in class edu.isi.pegasus.planner.classes.Profile
Sets the profile value
setProgramName(String) - 
Method in interface edu.isi.pegasus.common.logging.Event
Sets the program name for the software whose log statement are logged.
setProgramName(String) - 
Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
Sets the program name for the software whose log statement are logged.
setProgramName(String) - 
Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
Sets the program name for the software whose log statement are logged.
setProgramName(String) - 
Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
Sets the program name for the software whose log statement are logged.
setProgramName(String) - 
Method in interface edu.isi.pegasus.common.logging.LogFormatter
Sets the program name for the software whose log statement are logged.
setProperties(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the path to the properties file for the run.
setProperty(String, String) - 
Method in class edu.isi.pegasus.common.util.CommonProperties
Accessor: Overwrite any properties from within the program.
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.AbstractSiteCatalogResource
Sets the property of Site Catalog resource
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
Sets the property of Site Catalog resource
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
Sets the property of Site Catalog resource
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
Sets the property of Site Catalog resource
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
Sets the property of Site Catalog resource
setProperty(String, Object) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
Sets the property of Site Catalog resource
setProperty(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets  a property passed on the command line.
setProperty(String, String) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Accessor: Overwrite any properties from within the program.
setProtocol(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
Set the protocol implemented by the file server.
setRandomDir(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the random directory in which the jobs are run.
setRank(long) - 
Method in class edu.isi.pegasus.planner.ranking.Ranking
Sets the rank.
setReceived(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setRefiner(Refiner) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
Sets the callback to the refiner, that has loaded this implementation.
setRefiner(Refiner) - 
Method in interface edu.isi.pegasus.planner.transfer.Implementation
Sets the callback to the refiner, that has loaded this implementation.
setRegister(boolean) - 
Method in class edu.isi.pegasus.planner.dax.File
Set the register flag of the file.
setRegisterFlag(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the transient registration flag to value specified.
setRegName(String) - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
Sets the name of the registration job.
setRelativeDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the relative directory where the submit files are to be
 generated.
setRelativeSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the path to the submit directory relative to the base.
setRelativeSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the directory where the submit files are to be
 generated.
setRelease(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setReleaseVersion() - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Grabs the release version from VDS.Properties file.
setRemoteExecutable(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the path to the executable on the remote grid site.
setRenderedToExecutableForm(boolean) - 
Method in class edu.isi.pegasus.planner.classes.AggregatedJob
Returns a boolean indicating whether a job has been rendered to an executable
 form or not
setReplicaStore(ReplicaStore) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the Replica Store
setRequestID(String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the request id.
setResource(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setResourceHandle(String) - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Sets a new resource handle to remember as PFN attribute.
setResourceId(String) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the mResourceID where the transformation is available.
setRootWorkflowUUID(String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the root UUID for the workflow
setRuntime(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the expected runtime for the job.
setRuntime(double) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the expected runtime for the job.
setRuntime(long) - 
Method in class edu.isi.pegasus.planner.ranking.Ranking
Sets the runtime.
setSanitizePath(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the flag denoting whether to sanitize path or not.
setScheduler(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the the underlying scheduler that gateway talks to.
setScheduler(GridGateway.SCHEDULER_TYPE) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the the underlying scheduler that gateway talks to.
setSchemaLocations(String) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Sets the list of external real locations where the XML schema may
 be found.
setSchemaLocations(String) - 
Method in class edu.isi.pegasus.planner.parser.Parser
Sets the list of external real locations where the XML schema may be found.
setScratch(HeadNodeScratch) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Sets the scratch area on the head node.
setScratch(WorkerNodeScratch) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Sets the scratch area on the head node.
setSent(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setSharedDirectory(SharedDirectory) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
Sets the shared directory.
setSharedRSS(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setShortname(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setShortname(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setSignalNumber(short) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Accessor.
setSignalNumber(short) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
Accessor.
setSignals(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of signalss sent.
setSite(String) - 
Method in class edu.isi.pegasus.planner.dax.PFN
 
setSiteHandle(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the site handle for the site
setSiteHandle(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the site handle of the site, where teh job is to be executed
setSiteMap(String, Map) - 
Method in class edu.isi.pegasus.planner.classes.TCMap
This method allows to associate a site map with a particular logical transformation
setSiteTCEntries(String, String, TransformationCatalogEntry) - 
Method in class edu.isi.pegasus.planner.classes.TCMap
This method allows to add a TransformationCatalogEntry object in the map
 to a particular transformation for a particular site
setSize(double) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the size for the file.
setSize(String) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the size for the file.
setSize(long) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setSize(float, char) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Sets the size.
setSize(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Sets the size.
setSponsor_vo(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setSponsor_vo(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setStackRSS(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setStagingSiteHandle(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the staging site.
setStamp(Stamp) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Sets the time stamp when the machine info was obtained.
setStart(Date) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setStart(Date) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setStartTime(Date) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Set the start time for the planning operation.
setStatCall(int, StatCall) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Overwrites a stat at a certain position.
setStatCall(Collection) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor: Overwrites internal list with an external list
 representing stats.
setStatInfo(StatInfo) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Accessor.
setStatus(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setStatus(Status) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setStatus(int) - 
Method in class edu.isi.pegasus.planner.invocation.Status
Accessor.
setStdErr(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the file to which the stderr of the job needs to be written to
 at the remote grid site.
setStderr(File) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdIn(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the file to from which to pick up the stdin for the job.
setStdin(File) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdOut(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the file to which the stdout of the job needs to be written to
 at the remote grid site.
setStdout(File) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStorage(HeadNodeStorage) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Sets the storage area on the head node.
setStorage(WorkerNodeStorage) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Sets the storage area on the head node.
setSubmitDirectory(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the directory where the submit files are to be
 generated.
setSubmitDirectory(File) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the directory where the submit files are to be
 generated.
setSubmitDirectory(String, String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the path to the directory where the submit files are to be
 generated.
setSubmitToScheduler(boolean) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Returns whether to submit the workflow or not.
setSwaps(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of swap ops.
setSysInfo(SysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the System Information associated with the Site.
setSysInfo(SysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Sets the system information for the entry.
setSystemName(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setSystemTime(double) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the system time.
setTag(String) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setTag(String) - 
Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
Accessor.
setTerminate(boolean) - 
Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
 
setTime(Date, int) - 
Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
Adds a time for a particular event type.
setTime(Date) - 
Method in interface edu.isi.pegasus.planner.visualize.Measurement
Sets the time at which the measurement was taken.
setTime(Date) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
Sets the time at which the measurement was taken.
setTimeStampMillis(long) - 
Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
Set the timestamp from milliseconds
 returned by System.currentTimeMillis().
setTimeStampNanos(long) - 
Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
Set the timestamp from nanoseconds
 returned by System.nanoTime().
setTmp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setTmp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setTmp_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setTmp_space(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setTo(Node) - 
Method in class edu.isi.pegasus.planner.provisioner.Edge
set the 'to' task
setToString(Set, String) - 
Method in class edu.isi.pegasus.planner.classes.Data
A small helper method that displays the contents of a Set in a String.
setToString(Set, String) - 
Method in class edu.isi.pegasus.planner.refiner.MainEngine
A small helper method that displays the contents of a Set in a String.
setTotalNodes(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the number of total nodes that this grid gateway talks to.
setTotalNodes(int) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the total number of nodes that this grid gateway talks to.
setTotalSize(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
Sets the directory size
setTransfer(File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.File
Set the transfer type of the file
setTransferFlag(int) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the transient transfer flag to value passed.
setTransferFlag(String) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the transient transfer flag corresponding to the string
 value of transfer mode passed.
setTransferFlag(String, boolean) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the transient transfer flag corresponding to the string
 value of transfer mode passed.
setTransferType(int) - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
Sets the transfer type for the transfers associated.
setTransformation(String, String, String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the various attributes of underlying transformation.
setTransformation(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setTransformationStore(TransformationStore) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the Transformation Store
setTransientRegFlag() - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Deprecated.  
setTruncated(boolean) - 
Method in class edu.isi.pegasus.planner.invocation.Data
Accessor.
setTXName(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the transformation name of the underlying transformation.
setTXName(String) - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
Sets the name of the transfer job.
setTXNamespace(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the transformation namespace to be associated with the job.
setTXVersion(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the version of the underlying transformation.
setType(GridGateway.TYPE) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Sets the type of  grid gateway.
setType(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
Sets the type of replica catalog.
setType(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
setType(TCType) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the type of the transformation.
setType(int) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the type flag to value passed.
setType(String) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Sets the transient transfer flag to value passed.
setTypeRecursive() - 
Method in class edu.isi.pegasus.planner.classes.Job
Sets the job to be recursive.
setUID(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setUID(int) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setUMask(int) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setUname(Uname) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Sets the utsname generic system information record.
setUniverse(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Set the universe associated with the job.
setUnsharedRSS(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor.
setupJob(Job, List, List) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Small helper method to set up the attributes for the job elements.
setupLogging(LogManager, PegasusProperties) - 
Method in class edu.isi.pegasus.planner.client.Executable
Sets up the logging options for this class.
setupLogging() - 
Method in class edu.isi.pegasus.planner.client.NetloggerExitcode
Sets up the logging options for this class.
setupLogging() - 
Method in class edu.isi.pegasus.planner.client.PegasusGetSites
Sets up the logging options for this class.
setupLogging() - 
Method in class edu.isi.pegasus.planner.client.SCClient
Sets up the logging options for this class.
setupLogging() - 
Method in class edu.isi.pegasus.planner.client.TCClient
Sets up the logging options for this class.
setupLogging() - 
Method in class edu.isi.pegasus.planner.client.TCConverter
Sets up the logging options for this class.
setURL(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
Sets the url for the replica catalog.
setURL(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
Sets the url of the LRC associated with the object.
setURLPrefix(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
Sets the url prefix .
setUsage(Usage) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setUsage(Usage) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Accessor.
setUser() - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Returns the username.
setUser(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the user.
setUser(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setUser(String) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Accessor.
setUserTime(double) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the user time.
setUtil_jm(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setUtil_jm(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setValue(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
Returns the key value.
setValue(String) - 
Method in class edu.isi.pegasus.planner.classes.NameValue
Sets the value associated with this tuple.
setValue(String) - 
Method in class edu.isi.pegasus.planner.dax.MetaData
Set the value of the metadata
setValue(String) - 
Method in class edu.isi.pegasus.planner.dax.Profile
Set the value of this Profile
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgEntry
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgString
Accessor.
setValue(int, String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgVector
Sets the argument vector at the specified location.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Boot
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.CommandLine
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.CPU
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Data
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.EnvEntry
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.File
Accessor.
setValue(String) - 
Method in interface edu.isi.pegasus.planner.invocation.HasText
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Ignore
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Stamp
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.Uname
Accessor.
setValue(String) - 
Method in class edu.isi.pegasus.planner.invocation.WorkingDir
Accessor.
setValue(int) - 
Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
The set method to set the value.
setValue(Object) - 
Method in interface edu.isi.pegasus.planner.visualize.Measurement
Sets the value of the measurement.
setValue(Object) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
Sets the value of the measurement.
setVDSProperties(List) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Sets the VDS properties specifed by the user at the command line.
setVDSSuperNode(String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Setter method to the name of the compute job of Pegasus supernode containing
 this job.
setVDSSysInfo(VDSSysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the sysinfo for the site.
setVDSSysInfo(VDSSysInfo) - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Set the System Information associated with the transformation.
setVdt_version(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setVdt_version(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setVersion(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setVersion(String) - 
Method in class VersionTask
Accessor to set the version string.
setVOGroup(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the vo group
setVOGroup(String) - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Set the VO Group to which the user belongs
setVoInfo(VORSVOInfo) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setVoluntarySwitches(int) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Accessor: Sets the number of voluntary context switches.
setWeight(long) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
set execution time of this task
setWhat(String) - 
Method in class edu.isi.pegasus.planner.dax.Invoke
Set what executable to invoke and how
setWhen(Invoke.WHEN) - 
Method in class edu.isi.pegasus.planner.dax.Invoke
Set when to invoke
setWntmp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
setWntmp_loc(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
setWorkerNodeFS(WorkerNodeFS) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Sets the worker node filesystem.
setWorkerSharedDirectory(WorkerSharedDirectory) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
Sets the directory shared amongst the worker nodes only.
setWorkerSharedDirectory(WorkerSharedDirectory) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
Sets the directory shared amongst the worker nodes only.
setWorkflowLabel(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setWorkflowMetrics(WorkflowMetrics) - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Sets the workflow metrics.
setWorkflowRefinementStarted(boolean) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets whether the workflow refinement has started or not
setWorkflowTimestamp(Date) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setWorkflowUUID(String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Sets the UUID for the workflow
setWorkingDirectory(String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setWorkingDirectory(WorkingDir) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Accessor.
setWriters(String) - 
Method in class edu.isi.pegasus.common.logging.logger.Default
Sets both the output writer and the error writer to the same
 underlying writer.
setWriters(String) - 
Method in class edu.isi.pegasus.common.logging.logger.Log4j
Sets both the output writer and the error writer to the same
 underlying writer.
setWriters(String) - 
Method in class edu.isi.pegasus.common.logging.LogManager
Sets both the output writer and the error writer to the same
 underlying writer.
setXBitOnFile(String) - 
Method in class edu.isi.pegasus.planner.code.generator.Shell
Sets the xbit on the file.
setXBitOnFile(String) - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
Sets the xbit on the file.
setXBitWithKickstart() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether kickstart should set x bit on
 staged executables before launching them.
SHARED_FS_CONFIGURATION_VALUE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
The value for the non shared filesystem configuration.
SharedDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class represents a shared directory on a site.
SharedDirectory() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
The default constructor.
SharedDirectory(List<FileServer>, InternalMountPoint) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
The overloaded constructor
Shell - Class in edu.isi.pegasus.planner.code.generator
This code generator generates a shell script in the submit directory.
Shell() - 
Constructor for class edu.isi.pegasus.planner.code.generator.Shell
The default constructor.
shiftRight(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
Returns a float with the decimal point shifted right till the end.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.ExitCode
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.ExitPOST
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The SHORTNAME for this implementation.
SHORT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
The SHORTNAME for this implementation.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.ExitCode
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.ExitPOST
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
Returns a short textual description in the form of the name of the class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
Returns a short textual description in the form of the name of the class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
Returns a short textual description in the form of the name of the class.
shortDescribe() - 
Method in interface edu.isi.pegasus.planner.code.GridStart
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
Returns a short textual description of the implementing class.
shortDescribe() - 
Method in interface edu.isi.pegasus.planner.code.POSTScript
Returns a short textual description of the implementing class.
shortname - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
shortname - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
SHOULD_TRANSFER_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The name of the key that designates that files should be transferred
 via Condor File Transfer mechanism.
SHOULD_TRANSFER_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that designates that files should be transferred
 via Condor File Transfer mechanism.
show(String) - 
Static method in class edu.isi.pegasus.common.util.Separator2Test
 
show(String) - 
Static method in class edu.isi.pegasus.common.util.SeparatorTest
 
show(String, ReplicaCatalogEntry) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Preliminary implementation of output method.
showHelp() - 
Method in class edu.isi.pegasus.planner.client.RCClient
Prints internal command help.
ShowProperties - Class in <Unnamed>
Displays single specific values or all values from the current
 system properties.
ShowProperties() - 
Constructor for class ShowProperties
 
showThreads() - 
Method in class edu.isi.pegasus.planner.client.ExitCode
 
showUsage() - 
Method in class edu.isi.pegasus.planner.client.ExitCode
Implements printing the usage string onto stdout.
showUsage() - 
Method in class edu.isi.pegasus.planner.client.RCClient
Prints the usage string on stdout.
showUsage() - 
Method in class edu.isi.pegasus.planner.client.VersionNumber
Prints the usage string.
showUsage() - 
Method in class edu.isi.pegasus.planner.invocation.SimpleServer
 
showVersion(Version, boolean) - 
Static method in class edu.isi.pegasus.planner.client.VersionNumber
Print the version information onto stdout.
Simple - Class in edu.isi.pegasus.common.logging.format
This formatter formats the messages in the simple format.
Simple() - 
Constructor for class edu.isi.pegasus.common.logging.format.Simple
The default constructor.
SimpleEvent - Class in edu.isi.pegasus.common.logging.format
A Simple LogEvent implementation that is back by a StringBuffer.
SimpleEvent() - 
Constructor for class edu.isi.pegasus.common.logging.format.SimpleEvent
The default constructor.
SimpleFile - Class in edu.isi.pegasus.planner.catalog.replica.impl
This class implements a replica catalog on top of a simple file which
 contains two or more columns.
SimpleFile() - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
Default empty constructor creates an object that is not yet connected
 to any database.
SimpleServer - Class in edu.isi.pegasus.planner.invocation
 
SimpleServer(int) - 
Constructor for class edu.isi.pegasus.planner.invocation.SimpleServer
 
SimpleServerThread - Class in edu.isi.pegasus.planner.invocation
 
SimpleServerThread(SimpleServer, Socket) - 
Constructor for class edu.isi.pegasus.planner.invocation.SimpleServerThread
 
SINGLE_READ - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
Constants for single read.
SINGLE_READ - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
Constants for backward compatibility.
SingleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer
An empty interface, that allows for grouping of implementations that can
 handle only one file transfer per transfer job like old guc and Stork.
SingleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer
The refiner interface, that determines the functions that need to be
 implemented to add various types of transfer nodes to the workflow.
SingleFTPerXFERJobRefiner(ADag, PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.transfer.SingleFTPerXFERJobRefiner
The overloaded constructor.
SingleLook - Class in edu.isi.pegasus.planner.partitioner
This class ends up writing a partitioned dax, that corresponds to one
 partition as defined by the Partitioner.
SingleLook(String, String) - 
Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook
The overloaded constructor.
SingleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner
The internal callback handler for the DAXParser in Euryale.
SingleLook.MyCallBackHandler() - 
Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
The empty constructor.
SINGLETON_LOAD - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
Constants to specify how to load the
 class, as singleton or non singleton.
SINGLETON_LOAD - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
Constants to specify how to load the class, as singleton or non singleton.
singletonInstance(String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
The method which returns a Singleton instance of the derived InfoProvider
 class.
singletonInstance(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
The method returns a singleton instance of the derived InfoProvider class.
singletonInstance(String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
The method returns a singleton instance of the derived InfoProvider class.
SITE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserved word "site".
SITE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "site".
Site - Class in edu.isi.pegasus.planner.selector.site.heft
A data class that models a site as a collection of processors.
Site(String) - 
Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
The default constructor.
Site(String, int) - 
Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
The overloaded constructor.
SITE_CATALOG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the site catalog.
SITE_NAME_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
SITE_NAME_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
 
SITE_NOT_FOUND - 
Static variable in interface edu.isi.pegasus.planner.selector.SiteSelector
The value for the pool handle, when the pool is not found.
SITE_STORE - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the Site Store
SiteCatalog - Interface in edu.isi.pegasus.planner.catalog
 
SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes a site in the site catalog.
SiteCatalogEntry() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
The default constructor.
SiteCatalogEntry(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
The overloaded constructor.
SiteCatalogException - Exception in edu.isi.pegasus.planner.catalog.site
Class to notify of failures.
SiteCatalogException() - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
Constructs a SiteCatalogException with no detail
 message.
SiteCatalogException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
Constructs a SiteCatalogException with the
 specified detailed message.
SiteCatalogException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
Constructs a SiteCatalogException with the
 specified detailed message and a cause.
SiteCatalogException(Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
Constructs a SiteCatalogException with the
 specified just a cause.
SiteCatalogParser - Class in edu.isi.pegasus.planner.parser
This class uses the Xerces SAX2 parser to validate and parse an XML
 document conforming to the Site Catalog schema v3.0
SiteCatalogParser(PegasusBag, List<String>) - 
Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogParser
The overloaded constructor.
SiteCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
Class to capture reserved words.
SiteCatalogReservedWord(int) - 
Constructor for class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
Initializes an instance of a reserved word token.
SiteCatalogTextParser - Class in edu.isi.pegasus.planner.parser
Parses the input stream and generates site configuration map as
 output.
SiteCatalogTextParser(Reader) - 
Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
Initializes the parser with an input stream to read from.
SiteCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
Implements the scanner for reserved words and other tokens that are
 generated from the input stream.
SiteCatalogTextScanner(Reader) - 
Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
Starts to scan the given stream.
SiteData - Class in edu.isi.pegasus.planner.catalog.site.classes
The abstract base class for all site catalog classes.
SiteData() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteData
 
SiteFactory - Class in edu.isi.pegasus.planner.catalog.site.impl.old
A factory class to load the appropriate implementation of Transformation
 Catalog as specified by properties.
SiteFactory() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
 
SiteFactory - Class in edu.isi.pegasus.planner.catalog.site
A factory class to load the appropriate implementation of Site Catalog
 as specified by properties.
SiteFactory() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.SiteFactory
 
SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site.impl.old
Class to notify of failures while instantiating Site Catalog
 implementations.
SiteFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
Constructs a SiteFactoryException with no detail
 message.
SiteFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
Constructs a SiteFactoryException with the specified detailed
 message.
SiteFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
Constructs a SiteFactoryException with the
 specified detailed message and a cause.
SiteFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
Constructs a SiteFactoryException with the
 specified detailed message and a cause.
SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site
Class to notify of failures while instantiating Site Catalog
 implementations.
SiteFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
Constructs a SiteFactoryException with no detail
 message.
SiteFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
Constructs a SiteFactoryException with the specified detailed
 message.
SiteFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
Constructs a SiteFactoryException with the
 specified detailed message and a cause.
SiteFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
Constructs a SiteFactoryException with the
 specified detailed message and a cause.
SiteInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
This is a data class that is used to store information about a single
 remote site (pool).
SiteInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Default Constructor.
SITEINFO - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Array storing the names of the attributes that are stored with the
 site.
SiteInfo2SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
An adapter class that converts SiteInfo object to SiteCatalogEntry object.
SiteInfo2SiteCatalogEntry() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
 
siteIterator() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
Returns an iterator to list of String site identifiers
 for which data is available.
siteIterator() - 
Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
Returns an iterator to list of String site identifiers
 for which data is available.
siteList - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
 
siteName - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
 
SiteScrapper - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
Utility class that scrapes content from a website
SiteScrapper() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.SiteScrapper
 
siteSelectionFor(String, String) - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
siteSelectionFor
siteSelectionFor(String, String) - 
Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
SiteSelector - Interface in edu.isi.pegasus.planner.selector
The interface for the Site Selector.
SiteSelectorFactory - Class in edu.isi.pegasus.planner.selector.site
A factory class to load the appropriate type of Site Selector, as
 specified by the user at runtime in properties.
SiteSelectorFactory() - 
Constructor for class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
 
SiteSelectorFactoryException - Exception in edu.isi.pegasus.planner.selector.site
Class to notify of failures while instantiating SiteSelector implementations.
SiteSelectorFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
Constructs a SiteSelectorFactoryException with no detail
 message.
SiteSelectorFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
Constructs a SiteSelectorFactoryException with the specified detailed
 message.
SiteSelectorFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
Constructs a SiteSelectorFactoryException with the
 specified detailed message and a cause.
SiteSelectorFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
Constructs a SiteSelectorFactoryException with the
 specified detailed message and a cause.
SiteStore - Class in edu.isi.pegasus.planner.catalog.site.classes
The site store contains the collection of sites backed by a HashMap.
SiteStore() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
The default constructor.
size() - 
Method in class edu.isi.pegasus.common.util.CommonProperties
Accessor: Obtains the number of properties known to the project.
size() - 
Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
Returns the number of nodes in the graph.
size() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
Returns the number of nodes in the graph.
size() - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
Returns the number of nodes in the partition.
skippedEntity(String) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
Receive a notification that an entity was skipped.
skipWhitespace() - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
Skips any white space and comments in the input.
skipWhitespace() - 
Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
Skips any white space and comments in the input.
SLS - Interface in edu.isi.pegasus.planner.transfer
This interface defines the second level staging process, that manages
 the transfer of files from the headnode to the worker node temp and back.
SLSFactory - Class in edu.isi.pegasus.planner.transfer.sls
A factory class to load the appropriate type of SLS Implementation to do
 the Second Level Staging.
SLSFactory() - 
Constructor for class edu.isi.pegasus.planner.transfer.sls.SLSFactory
 
SLSFactoryException - Exception in edu.isi.pegasus.planner.transfer.sls
Class to notify of failures while instantiating SLS implementations.
SLSFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
Constructs a SLSFactoryException with no detail
 message.
SLSFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
Constructs a SLSFactoryException with the specified detailed
 message.
SLSFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
Constructs a SLSFactoryException with the
 specified detailed message and a cause.
SLSFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
Constructs a SLSFactoryException with the
 specified detailed message and a cause.
slurpInFile(String, String) - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
Convenience method to slurp in contents of a file into memory.
SOLUTION_PREFIX - 
Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The prefix that the site selector writes out on its stdout to
 designate that it is sending a solution.
sort() - 
Method in class edu.isi.pegasus.planner.partitioner.Topological
Topologically sorts the partition and returns a List of
 GraphNode elements.
sort() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
Sorts the records for each site.
sort() - 
Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
Sorts the records for each site.
Space - Class in edu.isi.pegasus.planner.visualize.spaceusage
A data class that stores the space usage.
Space(Date) - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.Space
The overloaded constructor.
Space(Date, String) - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.Space
The overloaded constructor.
SpaceComparator - Class in edu.isi.pegasus.planner.visualize.spaceusage
Comparator for Space objects that allows us to sort on time.
SpaceComparator() - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceComparator
 
spaceReadingsIterator() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
Returns the readings iterator.
SpaceUsage - Class in edu.isi.pegasus.planner.visualize.spaceusage
A container object that stores the space usage for each site.
SpaceUsage() - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
The default store.
SpaceUsageCallback - Class in edu.isi.pegasus.planner.visualize.spaceusage
Implements callback interface to calculate space usage.
SpaceUsageCallback() - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
The default constructor.
SPARCV7 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
SPARCV9 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
SPECIALIZED_TEMPLATES_Q - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
split(String) - 
Static method in class edu.isi.pegasus.common.util.Separator
Splits a fully-qualified identifier into its components.
splitFQDI(String) - 
Static method in class edu.isi.pegasus.common.util.Separator
Splits a fully-qualified definition identifier into separate
 namespace, name and version.
splitLFN(String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Splits the full qualified logical transformation into its components.
sponsor_vo - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
sponsor_vo - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
SRM_MOUNT_POINT_PROPERTIES_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
The suffix to retrive the mount point for SRM server.
SRM_PROPERTIES_PREFIX - 
Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
The property prefix for retrieving SRM properties.
SRM_SERVICE_URL_PROPERTIES_SUFFIX - 
Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
The suffix to retrive the service url for SRM server.
Ssh - Class in edu.isi.pegasus.common.credential.impl
A convenience class that allows us to determine the path to the user ssh private key file.
Ssh() - 
Constructor for class edu.isi.pegasus.common.credential.impl.Ssh
The default constructor.
SSH_IMPLEMENTING_CLASS - 
Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
 
SSH_PRIVATE_KEY_VARIABLE - 
Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
The name of the environment variable that specifies the path to the
 s3cfg file.
st - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
stack(boolean) - 
Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
Run Task placement phase of BTS algorithm
StackBasedXMLParser - Class in edu.isi.pegasus.planner.parser
An abstract base class that XML Parsers can use if they use stack internally
 to store the elements encountered while parsing XML documents using SAX
StackBasedXMLParser(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.parser.StackBasedXMLParser
The overloaded constructor.
stacked - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
STAGE_IN_JOB - 
Static variable in class edu.isi.pegasus.planner.classes.Job
Denotea a job that is used to stage in the input files for a compute job.
STAGE_IN_PREFIX - 
Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
The prefix for the jobs which are added to transfer the files to a job's
 execution pool from the location returned from the replica mechanism.
STAGE_IN_REMOTE_TYPE - 
Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
The constant to denote that a stage-in transfer is to be exectuted remotely
STAGE_IN_TPT_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT
The property name to get the sites for which stage-in transfers need to
 be TPT.
STAGE_IN_TPT_REMOTE - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
The constant to denote that a stage-in transfer is to be executed
 on the remote site.
STAGE_IN_TPT_REMOTE_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT
The property name to get the sites for which stage-in TPT transfers need to
 be executed on the remote site.
STAGE_IN_TPT_TYPE - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
The constant to denote that a stage-in transfer is to be third party.
STAGE_IN_TRANSFERS_REMOTE_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
The property name to get the sites for which stage-in transfers need to
 be executed remotely.
STAGE_IN_WORKER_PACKAGE_JOB - 
Static variable in class edu.isi.pegasus.planner.classes.Job
Denotes a job that stages the worker package.
STAGE_OUT_JOB - 
Static variable in class edu.isi.pegasus.planner.classes.Job
Denotes a job that transfers the date generated by a compute job to the
 output pool specified by the user.
STAGE_OUT_PREFIX - 
Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
The prefix for the jobs which are added to transfer the files generated by
 a job on an execution pool to the output pool.
STAGE_OUT_REMOTE_TYPE - 
Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
The constant to denote that a stage-out transfer is to be exectuted remotely
STAGE_OUT_TPT_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT
The property name to get the sites for which stage-out transfers need to
 be TPT.
STAGE_OUT_TPT_REMOTE - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
The constant to denote that a stage-out transfer is to be executed
 on the remote site.
STAGE_OUT_TPT_REMOTE_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT
The property name to get the sites for which stage-out TPT transfers need to
 be executed on the remote site.
STAGE_OUT_TPT_TYPE - 
Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
The constant to denote that a stage-out transfer is to be third party.
STAGE_OUT_TRANSFERS_REMOTE_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
The property name to get the sites for which stage-out transfers need to
 be executed remotely.
Staged - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
This implementation only generates maps for sites where transformation can be staged
Staged(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
The protected constructor.
Staged - Class in edu.isi.pegasus.planner.selector.transformation
This implementation of the Selector select a transformation of type STAGEABLE on all sites.
Staged() - 
Constructor for class edu.isi.pegasus.planner.selector.transformation.Staged
 
stageInOnRemoteSite(String) - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
Returns a boolean indicating whether to execute stage-in transfers on
 remote site or not.
stageInThirdParty(String) - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Returns a boolean indicating whether to use third party transfers for
 stage-in transfers or not.
stageInThirdPartyRemote(String) - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Returns a boolean indicating whether to execute third party transfers for
 stage-in on remote site or not.
stageOutOnRemoteSite(String) - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
Returns a boolean indicating whether to execute stage-out transfers on
 remote site or not.
stageOutThirdParty(String) - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Returns a boolean indicating whether to use third party transfers for
 stage-out transfers or not.
stageOutThirdPartyRemote(String) - 
Method in class edu.isi.pegasus.planner.transfer.TPT
Returns a boolean indicating whether to execute third party transfers for
 stage-out on remote site or not.
stageSLSFilesViaFirstLevelStaging() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to stage sls files via Pegasus
 First Level Staging or let Condor do it.
stagingIntroducedFor(List, String) - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
stagingIntroducedFor
stagingIntroducedFor(List, String) - 
Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
 
stagingSiteMappingToString() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Convers the staging site mappings to comma separated list of
 executionsite=stagingsite mappings
Stamp - Class in edu.isi.pegasus.planner.invocation
The Stamp element.
Stamp() - 
Constructor for class edu.isi.pegasus.planner.invocation.Stamp
The default constructor
Stamp(String) - 
Constructor for class edu.isi.pegasus.planner.invocation.Stamp
Constructs a piece of data.
STAMP_FILENAME - 
Static variable in class edu.isi.pegasus.common.util.Version
Basename of the build stamp file.
Stampede - Class in edu.isi.pegasus.planner.code.generator
A Stampede Events Code Generator that generates events in netlogger format
 for the exectuable workflow.
Stampede() - 
Constructor for class edu.isi.pegasus.planner.code.generator.Stampede
 
STAMPEDE_EVENT_GENERATOR_CLASS - 
Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
The name of the class implementing the Stampede Event Generator
STANDARD_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
STANDARD_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The condor universe key value for standard universe.
START_COMMENT_TAG - 
Static variable in class edu.isi.pegasus.common.util.XMLWriter
 
START_ELEMENT_TAG - 
Static variable in class edu.isi.pegasus.common.util.XMLWriter
 
START_END_ELEMENT_TAG - 
Static variable in class edu.isi.pegasus.common.util.XMLWriter
 
START_POSTFIX - 
Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
 
startDocument() - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
startDocument() - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
This method specifies what to do when the parser is at the beginning
 of the document.
startElement(String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
startElement(String, int) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
This method defines the action to take when the parser begins to parse
 an element.
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
 
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
 
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
Overriding the empty implementation provided by
 DefaultHandler of ContentHandler.
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
This method defines the action to take when the parser begins to parse
 an element.
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.Parser
An empty implementation is provided by DefaultHandler of ContentHandler.
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.PDAXParser
An empty implementation is provided by DefaultHandler of ContentHandler.
startElement(String, String, String, Attributes) - 
Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
This method defines the action to take when the parser begins to parse
 an element.
startMonitoring() - 
Method in interface edu.isi.pegasus.planner.code.CodeGenerator
Starts monitoring of the workflow by invoking a workflow monitor daemon.
startMonitoring() - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Starts monitoring of the workflow by invoking a workflow monitor daemon.
startMonitoring() - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Starts monitoring of the workflow by invoking a workflow monitor daemon
 tailstatd.
startMonitoring() - 
Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
Not implemented
startMonitoring() - 
Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
Not implemented
startMonitoring() - 
Method in class edu.isi.pegasus.planner.code.generator.Stampede
 
startParser(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
The main method that starts the parsing.
startParser(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
 
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
 
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
This starts the parsing of the file by the parser.
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
The main method that starts the parsing.
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.Parser
Start the parser.
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.PDAXParser
Ends up starting the parsing of the file , by the underlying parser.
startParser(String) - 
Method in class edu.isi.pegasus.planner.parser.SiteCatalogParser
The main method that starts the parsing.
startPrefixMapping(String, String) - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
There is a prefix or namespace defined, put the prefix and its URI
 in the HashMap.
STAT - 
Static variable in class edu.isi.pegasus.planner.classes.Profile
 
Stat - Class in edu.isi.pegasus.planner.namespace
The stat namespace object.
Stat() - 
Constructor for class edu.isi.pegasus.planner.namespace.Stat
The default constructor.
Stat(Map) - 
Constructor for class edu.isi.pegasus.planner.namespace.Stat
The overloaded constructor.
StatCall - Class in edu.isi.pegasus.planner.invocation
This class is the container for a complete call to stat() or fstat().
StatCall() - 
Constructor for class edu.isi.pegasus.planner.invocation.StatCall
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
StatCall(String) - 
Constructor for class edu.isi.pegasus.planner.invocation.StatCall
Construct a specific but empty stat call object.
statemap - 
Static variable in class edu.isi.pegasus.common.util.Separator
Maps the state and character class to the follow-up state.
statemap2 - 
Static variable in class edu.isi.pegasus.common.util.Separator
Maps the new state from current state and character class.
static_method(String, Object[]) - 
Method in class edu.isi.pegasus.common.util.DynamicLoader
Dynamically instantiates a class from a static method which
 constructs the resulting object.
StatInfo - Class in edu.isi.pegasus.planner.invocation
This class is the container for the results of a call to either
 stat() or fstat().
StatInfo() - 
Constructor for class edu.isi.pegasus.planner.invocation.StatInfo
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
statistics() - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
Show how many warnings, errors and fatals were shown.
Status - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
Status - Class in edu.isi.pegasus.planner.invocation
This class encapsulates the exit code or reason of termination for
 a given job.
Status() - 
Constructor for class edu.isi.pegasus.planner.invocation.Status
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
Status(int) - 
Constructor for class edu.isi.pegasus.planner.invocation.Status
Constructs a layer with the raw exit code.
Status(int, JobStatus) - 
Constructor for class edu.isi.pegasus.planner.invocation.Status
Constructs the complete class with raw exit code
 and a status child describing the exit code.
stdErr - 
Variable in class edu.isi.pegasus.planner.classes.Job
File which contains standard error.
stdIn - 
Variable in class edu.isi.pegasus.planner.classes.Job
File which contains stdin (keyboard input).
stdOut - 
Variable in class edu.isi.pegasus.planner.classes.Job
File which contains stdout.
STORAGE_DIR - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
The constant to be passed to the accessor functions to get or set the
 storage directory of the grid ftp server.
StorageType - Class in edu.isi.pegasus.planner.catalog.site.classes
An Abstract Data class to describe the filesystem layout on a site, both
 shared and local on a site/node
StorageType() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
The default constructor
StorageType(LocalDirectory, SharedDirectory) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
The overloaded constructor.
store(Map) - 
Method in class edu.isi.pegasus.planner.classes.ReplicaStore
Stores replica catalog entries into the store.
StoreGvdsMdsInfo(NamingEnumeration, String, PoolConfig) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
 
Stork - Class in edu.isi.pegasus.planner.code.generator
This implementation generates files that can be understood by Stork.
Stork() - 
Constructor for class edu.isi.pegasus.planner.code.generator.Stork
The default constructor.
Stork - Class in edu.isi.pegasus.planner.transfer.implementation
The implementation that creates transfer jobs referring to the stork data
 placement scheduler that can handle only one transfer per job.
Stork(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.transfer.implementation.Stork
The overloaded constructor, that is called by the Factory to load the
 class.
strargs - 
Variable in class edu.isi.pegasus.planner.classes.Job
The arguements for the job.
Strategy - Interface in edu.isi.pegasus.planner.refiner.createdir
The interface that defines how the cleanup job is invoked and created.
STREAM_STDERR_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies whether to stream stderr or not
STREAM_STDOUT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies whether to stream stderr or not
StreamGobbler - Class in edu.isi.pegasus.common.util
A Stream gobbler class to take care of reading from a stream and optionally
 write out to another stream.
StreamGobbler(InputStream, StreamGobblerCallback) - 
Constructor for class edu.isi.pegasus.common.util.StreamGobbler
The overloaded constructor.
StreamGobblerCallback - Interface in edu.isi.pegasus.common.util
This interface defines the callback calls that are called from within the
 StreamGobbler while working on a stream.
stringInList(String, List) - 
Method in class edu.isi.pegasus.planner.refiner.Engine
 
stringInPegVector(String, Vector) - 
Method in class edu.isi.pegasus.planner.refiner.Engine
Returns true if a particular String is in the Vector of PegasusFile objects.
stringInVector(String, Vector) - 
Method in class edu.isi.pegasus.planner.refiner.Engine
Returns true if a particular String is in the Vector of strings.
STYLE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the key, that denotes the style of the dag that is constructed.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
The name of the style being implemented.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The name of the style being implemented.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
The name of the style being implemented.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
The name of the style being implemented.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
The name of the style being implemented.
STYLE_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
The name of the style being implemented.
SUBDAG_EXTERNAL_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Dagman
The name of the key that indicates the path to the external subdag
SUBDAXGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
The class that takes in a dax job specified in the DAX and renders it into
 a SUBDAG with pegasus-plan as the appropriate prescript.
SUBDAXGenerator() - 
Constructor for class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
The default constructor.
Submit - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
This implementation of the TCMapper returns a TCMap which only contains
 Stageable executables from the Local site.
Submit(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
The protected constructor.
Submit - Class in edu.isi.pegasus.planner.selector.transformation
This implementation of the Selector select a transformation of type STAGEABLE and only on the submit site.
Submit() - 
Constructor for class edu.isi.pegasus.planner.selector.transformation.Submit
 
SUBMIT_DIR_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The submit directory for the workflow.
SUBMIT_DIRECTORY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
The prefix for the submit directory.
SUBMIT_DIRECTORY_PREFIX - 
Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The prefix for the submit directory.
SUBMIT_HOSTNAME_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The key for the submit hostname.
SubmitDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.client
A filename filter for identifying the submit directory
SubmitDirectoryFilenameFilter(String) - 
Constructor for class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
Overloaded constructor.
submitToScheduler() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Returns whether to submit the workflow or not.
submitWorkflow(String) - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Submits the workflow for execution using pegasus-run, a wrapper around
 pegasus-submit-dag.
SUCCESS_MESSAGE - 
Static variable in class edu.isi.pegasus.planner.client.CPlanner
The message to be logged in case of empty executable workflow.
SUFFIX_TEMPORARY_FILE - 
Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The suffix to be used while creating a temporary file to pass to
 the external siteselector.
Sum - Class in edu.isi.pegasus.planner.namespace.aggregator
An implementation of the Aggregator interface that sums the profile values.
Sum() - 
Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Sum
 
SUM_AGGREGATOR - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
Static Handle to the sum aggregator.
SUNOS - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
SUPPORTED_TRANSFORMATION_FORMAT - 
Static variable in class edu.isi.pegasus.planner.client.TCConverter
The supported transformation formats.
Swap - Class in edu.isi.pegasus.planner.invocation
The swap element.
Swap() - 
Constructor for class edu.isi.pegasus.planner.invocation.Swap
The default constructor
symbolTable() - 
Static method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
Singleton access to the symbol table as a whole.
symbolTable() - 
Static method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
Singleton access to the symbol table as a whole.
SYMLINK_URL_SCHEME - 
Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
The scheme name for file url.
symlinkCommonLog() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Completely disable placing a symlink for Condor common log (indiscriminately).
SysInfo - Class in edu.isi.pegasus.planner.catalog.classes
A container class to keep system information associated with a Site entry in
 the Site Catalog or a Transformation in the Transformation Catalog.
SysInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
The default constructor.
SysInfo(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
This constructor takes the system information in the format arch::os:osversion:glibc
SYSINFO - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
The constant to be passed to the accessor functions to get or set the
 VDSSysInfo site.
SYSINFO - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserved work sysinfo.
SysInfo.Architecture - Enum in edu.isi.pegasus.planner.catalog.classes
Enumerates the new architecture types supported in Pegasus.
SysInfo.Architecture() - 
Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
 
SysInfo.OS - Enum in edu.isi.pegasus.planner.catalog.classes
Enumerates the new OS types supported in Pegasus.
SysInfo.OS() - 
Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
 
system - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
system - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
SYSTEM_ARCHITECTURE - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_ARCHITECTURE - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SYSTEM_ATTRIBUTE_KEY - 
Static variable in class edu.isi.pegasus.planner.invocation.Uname
The system attribute for the uname
SYSTEM_HOSTADDR - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_HOSTADDR - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SYSTEM_HOSTNAME - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_HOSTNAME - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SYSTEM_NODENAME - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_NODENAME - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SYSTEM_NUMBEROFPROCESSORS - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_NUMBEROFPROCESSORS - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
SYSTEM_OS - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
SYSTEM_OS - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
systemstring - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 



T

T2 - Class in edu.isi.pegasus.planner.transfer.implementation
The implementation that creates transfer jobs referring to the T2
 executable distributed with the Pegasus.
T2(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.transfer.implementation.T2
The overloaded constructor, that is called by the Factory to load the
 class.
TABSPACE - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
 
TAIL_INDEX - 
Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
The index of the tail job.
TailStatd - Class in edu.isi.pegasus.planner.visualize.spaceusage
The callback parses the jobstate.log file to order the events of how
 the jobs executed.
TailStatd() - 
Constructor for class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
The default constructor.
TAILSTATD_TIMING_SOURCE - 
Static variable in class edu.isi.pegasus.planner.client.PlotNodeUsage
The tailstatd timing source.
TAILSTATD_TIMING_SOURCE - 
Static variable in class edu.isi.pegasus.planner.client.PlotSpaceUsage
The tailstatd timing source.
Task - Class in edu.isi.pegasus.planner.invocation
The proc element.
Task() - 
Constructor for class edu.isi.pegasus.planner.invocation.Task
The default constructor
TASK_EDGE_EVENT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The event name for task edge
TASK_EVENT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The event name for task info
TASK_ID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The attribute key for task id
TASK_MAP_EVENT_NAME - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The event name for task map event
TASK_TRANSFORMATION_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The attribute key for transformation
taskName - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
tc - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
tc - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
TC_DATA_FILE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
TC_INITIALIZATION_FILES - 
Static variable in class edu.isi.pegasus.planner.client.TCConverter
List of sql initialization files
TC_TEXT_FILE - 
Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
 
TCAdd - Class in edu.isi.pegasus.planner.catalog.transformation.client
 
TCAdd(TransformationCatalog, LogManager, Map) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
 
TCClient - Class in edu.isi.pegasus.planner.client
A common client to add, modify, delete, query any Transformation Catalog
 implementation.
TCClient() - 
Constructor for class edu.isi.pegasus.planner.client.TCClient
 
TCConverter - Class in edu.isi.pegasus.planner.client
A client to convert transformation catalog between different formats.
TCConverter() - 
Constructor for class edu.isi.pegasus.planner.client.TCConverter
The default constructor.
TCDelete - Class in edu.isi.pegasus.planner.catalog.transformation.client
This is a TCClient class which handles the Delete Operations.
TCDelete(TransformationCatalog, LogManager, Map) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
 
TCFormatUtility - Class in edu.isi.pegasus.planner.catalog.transformation.client
This is a utility class for converting transformation catalog into different formats.
TCFormatUtility() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
 
tclist - 
Variable in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
 
TCMap - Class in edu.isi.pegasus.planner.classes
This is a data class to store the TCMAP for a particular dag.
TCMap() - 
Constructor for class edu.isi.pegasus.planner.classes.TCMap
Default constructor.
TCMode - Class in edu.isi.pegasus.planner.catalog.transformation
This class defines all the constants
     referring to the various interfaces
     to the transformation catalog, and
     used by the Concrete Planner.
TCMode() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TCMode
 
TCQuery - Class in edu.isi.pegasus.planner.catalog.transformation.client
 
TCQuery(TransformationCatalog, LogManager, Map) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
 
TCQuery.LFNComparator - Class in edu.isi.pegasus.planner.catalog.transformation.client
The comparator that is used to group the RLSAttributeObject objects by the
 value in the key field.
TCQuery.LFNComparator() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator
 
TCType - Enum in edu.isi.pegasus.planner.catalog.transformation.classes
This is an enumerated data class for the different types of transformation.
TCType() - 
Constructor for enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
 
tempFT - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
TEMPLATE - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
TEMPLATE_ID - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
TEMPLATE_ID - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
Temporary - Class in edu.isi.pegasus.planner.invocation
This class is the container for a temporary file object.
Temporary() - 
Constructor for class edu.isi.pegasus.planner.invocation.Temporary
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
Temporary(String, int) - 
Constructor for class edu.isi.pegasus.planner.invocation.Temporary
Constructs a temporary file object.
tempST - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
Tentacles - Class in edu.isi.pegasus.planner.refiner.createdir
This Strategy instance places the create directory jobs at the top of the graph.
Tentacles() - 
Constructor for class edu.isi.pegasus.planner.refiner.createdir.Tentacles
 
test(String) - 
Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
Helper test method that tries and catches exception
TestDAXParser - Class in edu.isi.pegasus.planner.parser
A Test Class to demonstrate use of DAXParser and illustrates how to use
 the Callbacks for the parser.
TestDAXParser() - 
Constructor for class edu.isi.pegasus.planner.parser.TestDAXParser
 
testForFile(String) - 
Method in class edu.isi.pegasus.planner.parser.Parser
Tests whether the file exists or not.
TestLogFormatter - Class in edu.isi.pegasus.common.logging
Test program to test out LogFormatter API
TestLogFormatter() - 
Constructor for class edu.isi.pegasus.common.logging.TestLogFormatter
 
TestMyOSG - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.test
Testing class to test the MyOSG implementation.
TestMyOSG() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
 
TestNamespace - Class in edu.isi.pegasus.planner.namespace
Test Class for namespaces.
TestNamespace() - 
Constructor for class edu.isi.pegasus.planner.namespace.TestNamespace
 
TestReplicaCatalog - Class in edu.isi.pegasus.planner.catalog.replica
A Test program that shows how to load a Replica Catalog, and query for entries sites.
TestReplicaCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog
 
TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.impl.old
A Test program that shows how to load a Site Catalog, and query for all sites.
TestSiteCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog
 
TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
A Test program that shows how to load a Site Catalog, and query for all sites.
TestSiteCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog
 
TestTPT - Class in edu.isi.pegasus.planner.transfer
Client for testing  the TPT class.
TestTPT() - 
Constructor for class edu.isi.pegasus.planner.transfer.TestTPT
 
TestTransformationCatalog - Class in edu.isi.pegasus.planner.catalog.transformation
A Test program that shows how to load a Replica Catalog, and query for entries sites.
TestTransformationCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog
 
TestVORSSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
A Test program that shows how to load a Site Catalog, and query for all sites.
TestVORSSiteCatalog() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog
 
Text - Class in edu.isi.pegasus.planner.catalog.site.impl.old
It gets the information about a pool by reading the multiline site
 catalog that is in a multiline format.
Text(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
The private constructor that is called only once, when the Singleton is
 invoked for the first time.
Text(String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
The private constructor that is called to return a non singleton instance
 of the class.
Text - Class in edu.isi.pegasus.planner.catalog.transformation.impl
A File based Transformation Catalog where each entry spans multiple lines.
Text() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Text
Default constructor.
TEXT_FORMAT - 
Static variable in class edu.isi.pegasus.planner.client.SCClient
The textual format.
TEXT_FORMAT - 
Static variable in class edu.isi.pegasus.planner.client.TCConverter
The textual format.
TEXT_IMPLEMENTING_CLASS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
The name of the class that connects to an multi line Text based Site Catalog.
TEXT_READ_CLASS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
 
TEXT_READ_VALUE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
Constants for multiline text pool read.
TIME_END - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
TIME_END - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
TIME_START - 
Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
 
TIME_START - 
Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
 
timeMap - 
Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
 
TIMESTAMP_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The workflow timestamp.
timeString - 
Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
 
timeStringLock - 
Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
 
tlevel - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
TMP_FILE_NAME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.test.TestMyOSG
 
tmp_loc - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
tmp_loc - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
tmp_space - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
tmp_space - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
toArchitecture() - 
Method in class edu.isi.pegasus.planner.invocation.Uname
An adapter method to convert the uname object to the architecture object.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Condor
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.ENV
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Globus
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Hints
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Returns a condor description that can be used to put the contents of the
 namespace into the condor submit file during code generation.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Pegasus
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Selector
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toCondor() - 
Method in class edu.isi.pegasus.planner.namespace.Stat
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toDOT() - 
Method in class edu.isi.pegasus.planner.classes.ADag
Returns the DOT description of the object.
toDOT(Writer, String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Returns the DOT description of the object.
toDOT() - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns the DOT description of the object.
toDOT(Writer, String) - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns the DOT description of the object.
toDOT() - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Returns the DOT description of the object.
toDOT(Writer, String) - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Returns the DOT description of the object.
toFile(String, String) - 
Method in class edu.isi.pegasus.planner.client.SCClient
Writes out to a file, a string.
toJVMOptions() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Converts the vds properties that need to be passed to the jvm as an
 option.
Token - Interface in edu.isi.pegasus.planner.parser.tokens
Base class for the tokens passed from the Text Scanner to the parser.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
Returns the textual description of the  contents of GlobusVersion
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
Returns the textual description of the  contents of GridFTPServer
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
Returns the textual description of the  contents of JobManager
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
Returns the textual description of the  contents of LRC
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
Returns the textual description of the  contents of PoolConfig
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns the textual description of the  contents of SiteInfo
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
Returns the textual description of the  contents of WorkDir
 object in the multiline format.
toMultiLine() - 
Method in class edu.isi.pegasus.planner.classes.Profile
Returns the textual description of the  contents of Profile
 object in the multiline format.
toMultiLine(PoolConfig) - 
Method in class edu.isi.pegasus.planner.client.SCClient
Returns the String description of the  contents of PoolConfig
 object passed.
toNode - 
Variable in class edu.isi.pegasus.planner.provisioner.Edge
 
toOptions() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Generates the argument string corresponding to these options that can
 be used to invoke Pegasus.
topNode - 
Variable in class edu.isi.pegasus.planner.provisioner.Estimator
 
Topological - Class in edu.isi.pegasus.planner.partitioner
Does a topological sort on the Partition.
Topological(Partition) - 
Constructor for class edu.isi.pegasus.planner.partitioner.Topological
The overloaded constructor.
topologicalSortIterator() - 
Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
Returns an iterator for the graph that traverses in topological sort
 order.
topologicalSortIterator() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
Returns an iterator for the graph that traverses in topological sort
 order.
TopologicalSortIterator - Class in edu.isi.pegasus.planner.partitioner.graph
Does a topological sort on the Partition.
TopologicalSortIterator(Graph) - 
Constructor for class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
The overloaded constructor.
toString() - 
Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
Format a message in CEDPS Best Practices format.
toString() - 
Method in class edu.isi.pegasus.common.util.Version
Returns a string containing the concatenated version.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
Returns the string description of the object.
toString(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
Writes out the contents of the object as a String
toString() - 
Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
Returns the output of the data class as string.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
Converts the contents into a string.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
Writes out the object as a string.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteEnvironmentInfo
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfo
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteServiceInfo
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
Returns the textual description of the  contents of GlobusVersion
  object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
 
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
Returns the textual description of the  contents of LRC
 object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
Returns the textual description of the  contents of JobManager
 object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
Returns the textual description of the  contents of LRC object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns the textual description of the  contents of SiteInfo
 object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
Returns the textual description of the  contents of WorkDir
 object.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
Returns the string value of the architecture.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
Returns the string value of the operating system.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Returns the output of the data class as string.
toString() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
gets the String mVersion of the
 data class
toString() - 
Method in class edu.isi.pegasus.planner.classes.ADag
Returns the String description of the dag associated with this object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.AggregatedJob
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
Returns a string version of this.
toString() - 
Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
Converts object to String
toString() - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Returns the a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.DAGJob
Returns a textual description of the DAG Job.
toString() - 
Method in class edu.isi.pegasus.planner.classes.Data
Returns the String version of the data object, which is in human readable
 form.
toString() - 
Method in class edu.isi.pegasus.planner.classes.DAXJob
Returns a textual description of the DAX Job.
toString() - 
Method in class edu.isi.pegasus.planner.classes.FileTransfer
Returns a textual interpretation of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.NameValue
Writes out the contents of the class to a String
 in form suitable for displaying.
toString() - 
Method in class edu.isi.pegasus.planner.classes.Notifications
Returns a String description of the object
toString() - 
Method in class edu.isi.pegasus.planner.classes.PCRelation
Returns the textual description.
toString() - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Returns the String version of the data object, which is in human readable
 form.
toString() - 
Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.PlannerOptions
Returns the textual description of all the options that were set for
 the planner.
toString() - 
Method in class edu.isi.pegasus.planner.classes.Profile
This method returns a string of the contents of this object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
Returns the textual description of the data class.
toString() - 
Method in class edu.isi.pegasus.planner.classes.ReplicaStore
Returns the textual description of the data class.
toString() - 
Method in class edu.isi.pegasus.planner.classes.TCMap
Returns the textual description of the contents of the object
toString(String) - 
Method in class edu.isi.pegasus.planner.classes.TCMap
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.classes.TransferJob
Returns a textual description of the Transfer Job.
toString() - 
Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.dax.Executable
 
toString() - 
Method in class edu.isi.pegasus.planner.dax.Invoke
Returns the object as String
toString() - 
Method in class edu.isi.pegasus.planner.dax.Parent
 
toString() - 
Method in class edu.isi.pegasus.planner.dax.Transformation
 
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.ArgEntry
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Arguments
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.CommandLine
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Data
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.EnvEntry
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Environment
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.File
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Ignore
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.MachineInfo
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Status
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Converts the active state into something meant for human consumption.
toString(Writer) - 
Method in class edu.isi.pegasus.planner.invocation.WorkingDir
Converts the active state into something meant for human consumption.
toString(String) - 
Method in class edu.isi.pegasus.planner.namespace.Dagman
Converts the contents of the map into the string that can be put in the
 Condor file for printing.
toString() - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Returns the contents as String.
toString() - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
Returns the arguments as string
toString() - 
Method in class edu.isi.pegasus.planner.parser.tokens.Identifier
Returns the textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
The textual representation of the graph node.
toString() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
Returns a textual description of the Bag.
toString() - 
Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
The textual representation of the graph node.
toString() - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
Returns a String version of the object.
toString() - 
Method in class edu.isi.pegasus.planner.ranking.Ranking
Returns a textual description.
toString() - 
Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
Returns the textual representation of this
toString() - 
Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
Writes out the contents of the class to a String in form suitable for
 displaying.
toString() - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
Returns the textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
Returns the textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
Returns a textual description of the state as
 (stageinRemote,interRemote,stageoutRemote).
toString() - 
Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
Returns a textual description of the state as
 (stageinRemote,interRemote,stageoutRemote,stageinTPT,interTPT,stageOutTPT).
toString() - 
Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.NumJobsMeasurement
Returns textual description.
toString() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
Returns a textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Returns a textual description of the content
toString() - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsage
Returns textual description of the object.
toString() - 
Method in class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
Returns textual description of the object.
TOTAL_MEM - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the
 total memory.
TOTAL_NODES - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the total
 number of nodes.
TOTAL_SIZE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
The constant to be passed to the accessor functions to get or set the
 total size.
TOTAL_SIZE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
The constant to be passed to the accessor functions to get or set the
 total space available.
totalET - 
Variable in class edu.isi.pegasus.planner.provisioner.Estimator
 
toTCString() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Prints out a TC file format String.
toText(TransformationCatalogEntry, String, String) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
Converts the transformation catalog entry object to the multi line
 textual representation.
toTextFormat(TransformationStore) - 
Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
Converts the transformations into multi line text format
toXML(String, String) - 
Method in class edu.isi.pegasus.common.util.XMLOutput
Dumps the state of the current element as XML output.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.common.util.XMLOutput
Convenience adaptor method invoking the equivalent of:
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.common.util.XMLOutput
Dump the state of the current element as XML output.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
Writes out the xml description of the object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
Returns the xml description of the object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
Returns the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
Writes out the contents of the replica store as XML document
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
 
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
Writes out the xml description of the object.
toXML(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
Writes out the xml description of the object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
Returns the XML description of the  contents of Gridftp object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
Returns the XML description of the  contents of LRC
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
Returns the XML description of the  contents of JobManager
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
Returns the XML description of the  contents of LRC
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
Returns the XML description of the  contents of PoolConfig
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
Returns the XML description of the  contents of SiteInfo
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
Returns the XML description of the  contents of WorkDir
 object.
toXML() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Returns an xml output of the contents of the data class.
toXML() - 
Method in class edu.isi.pegasus.planner.classes.Profile
This method returns an xml of the contents of this object.
toXML(PoolConfig) - 
Method in class edu.isi.pegasus.planner.client.SCClient
Returns the XML description of the  contents of PoolConfig
 object passed, conforming to pool config schema found at
 http://pegasus.isi.edu/schema/sc-2.0.xsd.
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.ADAG
Generates a DAX representation.
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.CatalogType
Write the XML representation of this object
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.CatalogType
Write the XML representation of this object
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.DAG
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.DAX
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.Executable
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Executable
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.File
Write the file object
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.File
Write the file object, with indent level N
toXML(XMLWriter, int, String) - 
Method in class edu.isi.pegasus.planner.dax.File
Write the  file object as XML but render it as the elementname
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.Invoke
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Invoke
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Job
Overrides Base TOXML method.
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.MetaData
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.MetaData
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.Parent
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Parent
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.PFN
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.PFN
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.Profile
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Profile
 
toXML(XMLWriter) - 
Method in class edu.isi.pegasus.planner.dax.Transformation
 
toXML(XMLWriter, int) - 
Method in class edu.isi.pegasus.planner.dax.Transformation
 
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Architecture
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgEntry
Dumps the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgString
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgString
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgVector
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.ArgVector
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.CommandLine
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.CommandLine
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.Data
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Data
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Descriptor
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.EnvEntry
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Environment
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Fifo
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Ignore
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Job
Dumps the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Machine
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.MachineInfo
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Regular
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.StatCall
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.StatInfo
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Status
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Temporary
Dump the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.Usage
Dump the state of the current element as XML output.
toXML(String) - 
Method in class edu.isi.pegasus.planner.invocation.WorkingDir
Dumps the state of the current element as XML output.
toXML(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.WorkingDir
Dump the state of the current element as XML output.
toXML(Writer) - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
Returns the xml description of the object.
toXML() - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
Returns the xml description of the object.
toXML(Writer) - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
Returns the xml description of the object.
toXML() - 
Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
Returns the interaction assertions as a XML blob.
toXML(Writer) - 
Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
Returns the xml description of the object.
toXML() - 
Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
Returns the interaction assertions as a XML blob.
TPT - Class in edu.isi.pegasus.planner.transfer
A common class, that builds up the third party state for the sites from
 the properties file.
TPT() - 
Constructor for class edu.isi.pegasus.planner.transfer.TPT
The default constructor.
TPT(PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.transfer.TPT
The overloaded constructor.
TPT.TPTState - Class in edu.isi.pegasus.planner.transfer
An inner class that holds the third party state for a particular site.
TPT.TPTState() - 
Constructor for class edu.isi.pegasus.planner.transfer.TPT.TPTState
The default constructor.
TPTGUC - Class in edu.isi.pegasus.planner.transfer.implementation
The implementation that is used to create transfer jobs that callout to
 the new globus-url-copy client, that support multiple file transfers
TPTGUC(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
The overloaded constructor, that is called by the Factory to load the
 class.
TRACE_MESSAGE_LEVEL - 
Static variable in class edu.isi.pegasus.common.logging.LogManager
The level value, to indicate a DEBUG message.
TRACE_MESSAGE_TYPE - 
Static variable in class edu.isi.pegasus.common.logging.logger.Default
The type value to indicate a DEBUG message.
trackInTransientRC(Job) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Tracks the files created by a job in the Transient Replica Catalog.
trackInTransientRC(String, String, String) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Inserts an entry into the Transient RC.
trackInTransientRC(String, String, String, boolean) - 
Method in class edu.isi.pegasus.planner.refiner.TransferEngine
Inserts an entry into the Transient RC.
Transfer - Class in edu.isi.pegasus.planner.transfer.implementation
The implementation that creates transfer jobs referring to the python based
 transfer script distributed with Pegasus since version 3.0
Transfer(PegasusBag) - 
Constructor for class edu.isi.pegasus.planner.transfer.implementation.Transfer
The overloaded constructor, that is called by the Factory to load the
 class.
Transfer - Class in edu.isi.pegasus.planner.transfer.sls
This uses the transfer executable distributed with Pegasus to do the
 second level staging.
Transfer() - 
Constructor for class edu.isi.pegasus.planner.transfer.sls.Transfer
The default constructor.
TRANSFER_ARGUMENTS_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the profile key, that when associated with transfer jobs
 determines the arguments with which the transfer executable is invoked.
TRANSFER_EXECUTABLE_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
TRANSFER_EXECUTABLE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies transfer of executable
TRANSFER_IP_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies transfer of input files.
TRANSFER_MANDATORY - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The mode where the transfer for this file to the pool
 is constructed and the transfer job fails if the transfer fails.
TRANSFER_NOT - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The mode where the transfer for this file is not constructed.
TRANSFER_OP_FILES_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that specifies transfer of input files.
TRANSFER_OPTIONAL - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The mode where the transfer for this file to the pool is constructed,
 but the transfer job should not fail if the transfer fails.
TRANSFER_PROXY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the profile key if associated with a job, results in an explicit
 transfer of the proxy from the submit host to the remote site, instead of
 banking upon CondorG to transfer the proxy.
TRANSFER_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.refiner.Engine
 
TRANSFER_UNIVERSE - 
Static variable in interface edu.isi.pegasus.planner.transfer.Implementation
The universe that applies for the transfer jobs.
TransferEngine - Class in edu.isi.pegasus.planner.refiner
The transfer engine, which on the basis of the pools on which the jobs are to
 run, adds nodes to transfer the data products.
TransferEngine(ADag, PegasusBag, List<Job>, List<Job>) - 
Constructor for class edu.isi.pegasus.planner.refiner.TransferEngine
Overloaded constructor.
TransferImplementationFactoryException - Exception in edu.isi.pegasus.planner.transfer.implementation
Class to notify of failures while instantiating Transfer Implementations.
TransferImplementationFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
Constructs a TransferImplementationFactoryException with no detail
 message.
TransferImplementationFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
Constructs a TransferImplementationFactoryException with the specified detailed
 message.
TransferImplementationFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
Constructs a TransferImplementationFactoryException with the
 specified detailed message and a cause.
TransferImplementationFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
Constructs a TransferImplementationFactoryException with the
 specified detailed message and a cause.
transferImplementationTable() - 
Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Singleton access to the transfer implementation table.
transferInRange(int) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Returns whether the transfer value for the mode is in range or not.
TransferJob - Class in edu.isi.pegasus.planner.classes
This is a data class that stores the contents of the transfer job that
 transfers the data.
TransferJob() - 
Constructor for class edu.isi.pegasus.planner.classes.TransferJob
The default constructor.
TransferJob(Job) - 
Constructor for class edu.isi.pegasus.planner.classes.TransferJob
The overloaded construct that constructs a GRMS job by wrapping around
 the Job job.
transferOutput(GraphNode) - 
Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
Returns whether a user wants output transferred for a node or not.
TransferRefinerFactoryException - Exception in edu.isi.pegasus.planner.transfer.refiner
Class to notify of failures while instantiating Transfer Refiners.
TransferRefinerFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
Constructs a TransferRefinerFactoryException with no detail
 message.
TransferRefinerFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
Constructs a TransferRefinerFactoryException with the specified detailed
 message.
TransferRefinerFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
Constructs a TransferRefinerFactoryException with the
 specified detailed message and a cause.
TransferRefinerFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
Constructs a TransferRefinerFactoryException with the
 specified detailed message and a cause.
transferRefinerTable() - 
Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Singleton access to the transfer refiner table.
transferWorkerPackage() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
It specifies if the worker package needs to be staged to the remote site
 or not.
Transformation - Class in edu.isi.pegasus.planner.dax
This Object is used to create a complex Transformation.
Transformation(String) - 
Constructor for class edu.isi.pegasus.planner.dax.Transformation
Create a new Transformation object
Transformation(Transformation) - 
Constructor for class edu.isi.pegasus.planner.dax.Transformation
Copy Constructor
Transformation(String, String, String) - 
Constructor for class edu.isi.pegasus.planner.dax.Transformation
Create a new Transformation Object
TRANSFORMATION - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserved word "tr".
TRANSFORMATION_CATALOG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the transformation catalog.
TRANSFORMATION_MAPPER - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the Transformation Mapper.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
The logical name of kickstart
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
The logical name of the transformation that creates directories on the
 remote execution pools.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
The logical name of the transformation that creates directories on the
 remote execution pools.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The logical name of the worker package
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
The logical name of the transformation that removes directories on the
 remote execution pools.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
The name of the underlying transformation that is queried for in the
 Transformation Catalog.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
The transformation namespace for the cluster jobs.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
The transformation namespace for the kickstart
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
The transformation namespace for the  job.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
The transformation namespace for the create dir jobs.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
The transformation namespace for the create dir jobs.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The transformation namespace for the worker package
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
The transformation namespace for the create dir jobs.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
The transformation namespace for the transfer job.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
The transformation namespace for the transfer job.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
The transformation namespace for the transfer job.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
The transformation namespace for the transfer job.
TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
The transformation namespace for the transfer job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
The version number for the derivations for cluster jobs
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
The version number for kickstart.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
The version number for the job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
The version number for the derivations for create dir  jobs.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
The version number for the derivations for create dir  jobs.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The version number for the worker package.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
The version number for the derivations for create dir  jobs.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
The version number for the transfer job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
The version number for the transfer job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
The version number for the transfer job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
The version number for the transfer job.
TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
The version number for the transfer job.
TransformationCatalog - Interface in edu.isi.pegasus.planner.catalog
This class is an interface to the various TxCatalog implementations that Pegasus will use.
TransformationCatalogEntry - Class in edu.isi.pegasus.planner.catalog.transformation
An object of this class corresponds to a
 tuple in the Transformation Catalog.
TransformationCatalogEntry() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
The basic constructor
TransformationCatalogEntry(String, String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Optimized Constructor
TransformationCatalogEntry(String, String, String, String, String, TCType, List, VDSSysInfo) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Optimized Constructor
TransformationCatalogEntry(String, String, String, String, String, TCType, Profiles, SysInfo) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
Overloaded constructor.
TransformationCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
Class to capture reserved words for the textual format of Transformation
 Catalog
TransformationCatalogReservedWord(int) - 
Constructor for class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
Initializes an instance of a reserved word token.
TransformationCatalogTextParser - Class in edu.isi.pegasus.planner.parser
Parses the input stream and generates the TransformationStore as output.
TransformationCatalogTextParser(Reader, LogManager) - 
Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
Initializes the parser with an input stream to read from.
TransformationCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
Implements the scanner for reserved words and other tokens that are
 generated from the input stream for the Transformation Catalog.
TransformationCatalogTextScanner(Reader) - 
Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
Starts to scan the given stream.
TransformationFactory - Class in edu.isi.pegasus.planner.catalog.transformation
A factory class to load the appropriate implementation of Transformation
 Catalog as specified by properties.
TransformationFactory() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
 
TransformationFactoryException - Exception in edu.isi.pegasus.planner.catalog.transformation
Class to notify of failures while instantiating Transformation Catalog
 implementations.
TransformationFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
Constructs a TransformationFactoryException with no detail
 message.
TransformationFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
Constructs a TransformationFactoryException with the specified detailed
 message.
TransformationFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
Constructs a TransformationFactoryException with the
 specified detailed message and a cause.
TransformationFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
Constructs a TransformationFactoryException with the
 specified detailed message and a cause.
TransformationSelector - Class in edu.isi.pegasus.planner.selector
 
TransformationSelector() - 
Constructor for class edu.isi.pegasus.planner.selector.TransformationSelector
 
TransformationStore - Class in edu.isi.pegasus.planner.catalog.transformation.classes
A container data class that is used to store transformations.
TransformationStore() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
The default constructor.
TRANSIENT_OPTIONAL_FLAG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The index of the flags field which when set indicates that the file
 is to be considered optional.
TRANSIENT_REGISTRATION_FLAG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
The index of the flags field which when set indicates that the file is
 not to be registered in the RLS/ RC.
TRANSIENT_REPLICA_CATALOG - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the transient replica catalog
TRANSIENT_REPLICA_CATALOG_IMPLEMENTER - 
Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
The name of the Replica Catalog Implementer that serves as the source for
 cache files.
TRANSIENT_REPLICA_CATALOG_KEY - 
Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
The name of the source key for Replica Catalog Implementer that serves as
 cache
treatCacheAsRC() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to treat the entries in the cache
 files as a replica catalog or not.
trigger - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
TRUE - 
Static variable in class edu.isi.pegasus.common.util.Boolean
The character representation of a true value.
Type - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 
type - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
type - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
The type of transformation.
type - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
TYPE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
token value for the reserver word "osversion".
TYPE_DESCRIPTION_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The attribute key for type description
TYPE_KEY - 
Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
The property key that designates the type of replica catalog to connect
 to.
TYPE_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The attribute key for task type
TYPE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The name of the key that denotes the type of the job.
TYPE_SETUP - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
The constant designating the implementation to be loaded for setup tx jobs.
TYPE_STAGE_IN - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
The constant designating the implementation be loaded for stage in jobs.
TYPE_STAGE_INTER - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
The constant designating the implementation be loaded for inter pool jobs.
TYPE_STAGE_OUT - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
The constant designating the implementation be loaded for stage out jobs.
TYPE_SYMLINK_STAGE_IN - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
The constant designating the implementation to be loaded for symbolic tx jobs.
typeInRange(int) - 
Static method in class edu.isi.pegasus.planner.classes.Job
Returns whether the job type value for the job is in range or not.
typeInRange(int) - 
Method in class edu.isi.pegasus.planner.visualize.JobMeasurements
Returns a boolean indicating whether the event type is in range of not.
typeInRange(int) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.JobSpace
Returns a boolean indicating whether the event type is in range of not.
typeNeedsCleanUp(int) - 
Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
Checks to see which job types are required to be looked at for cleanup.
typeRecursive() - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns whether the job is recursive or not.
typeStageOut(int) - 
Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
Checks to see if job type is a stageout job type.
typeToString() - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Returns the type associated with the logical file.
typeValid(int) - 
Method in class edu.isi.pegasus.planner.classes.PegasusFile
Returns whether the type of file value is valid or not.



U

Uname - Class in edu.isi.pegasus.planner.invocation
The uname element.
Uname() - 
Constructor for class edu.isi.pegasus.planner.invocation.Uname
The default constructor
Uname(String) - 
Constructor for class edu.isi.pegasus.planner.invocation.Uname
Constructs a piece of data.
unameToArchitecture(Uname) - 
Static method in class edu.isi.pegasus.planner.invocation.Uname
An adapter method to convert the uname object to the architecture object.
UNASSIGNED_JOB - 
Static variable in class edu.isi.pegasus.planner.classes.Job
Denotes a job that does not fall into the other categories.
UNDEFINED_ARCHMODE_VALUE - 
Static variable in class edu.isi.pegasus.planner.invocation.Uname
The undefined value for archmode attribute.
UNDEFINED_READ_VALUE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
Constants for mode not defined.
UNDEFINED_SITE - 
Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
Constant denoting an undefined site
UNDEFINED_SITE_NAME - 
Static variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
The site name that is associated in the case the resource handle is not
 specified with the PFN.
unescape(String) - 
Method in class edu.isi.ikcap.workflows.util.logging.Escape
Transforms a given string by unescaping all characters that
 are prefixed with the escape character.
unescape(String) - 
Method in class edu.isi.pegasus.common.util.Escape
Transforms a given string by unescaping all characters that
 are prefixed with the escape character.
unescape(String) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Unescapes previously backslashed characters.
UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the
 universe.
UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserved word "universe".
UNIVERSE_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
UNIVERSE_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of the key that denotes the condor universe key.
UNKNOWN_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Namespace
The key is unknown.
unknownKey(String, String) - 
Method in class edu.isi.pegasus.planner.namespace.Namespace
Warns about an unknown profile key and constructs it anyway.
unknownKey(String, String) - 
Method in class edu.isi.pegasus.planner.namespace.Pegasus
Warns about an unknown profile key and constructs it anyway.
unknownNamespaceMessage(String) - 
Static method in class edu.isi.pegasus.planner.classes.Profile
Returns the unknown namespace message.
unmarkArgs() - 
Method in class edu.isi.pegasus.planner.refiner.MainEngine
Deprecated.  
unsetInstalled() - 
Method in class edu.isi.pegasus.planner.dax.Executable
Unset the installed flag on the executable.
unSupportedNestingOfElements(String, String) - 
Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
Called when certain element nesting is allowed in the XML schema
 but is not supported in the code as yet.
UNTAR_DERIVATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The logical name of the transformation for the untar job.
UNTAR_DERIVATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The derivation namespace for the untar job.
UNTAR_DERIVATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The version number for the derivations for untar job.
UNTAR_PREFIX - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
Constant suffix for the names of the deployment nodes.
UNTAR_TRANSFORMATION_NAME - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The logical name of the worker package
UNTAR_TRANSFORMATION_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The transformation namespace for the worker package
UNTAR_TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
The version number for the worker package.
Update - Class in edu.isi.pegasus.planner.namespace.aggregator
An implementation of the Aggregator interface that always takes the
 new profile value.
Update() - 
Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Update
 
updateDownLen() - 
Method in class edu.isi.pegasus.planner.provisioner.Node
 
updateETs() - 
Method in class edu.isi.pegasus.planner.provisioner.Estimator
 
updateLeftBound(long, TreeSet) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
update EST(earliest start time) of this task.
updateLFNMap(String, String) - 
Method in class edu.isi.pegasus.planner.classes.DagInfo
Updates the lfn map, that contains the mapping of an lfn with the type.
updateProfiles(TransformationCatalogEntry) - 
Method in class edu.isi.pegasus.planner.classes.Job
Updates all the profile namespaces with the information associated in
 the transformation catalog for this job.
updateProfiles(PegasusProperties) - 
Method in class edu.isi.pegasus.planner.classes.Job
Updates all the profile namespaces with the information specified by the
 user in the properties file, that apply to this job.
updateProfiles(Profiles) - 
Method in class edu.isi.pegasus.planner.classes.Job
Updates all the profile namespaces with the information specified in
 list of profile objects passed.
updateProfiles(List) - 
Method in class edu.isi.pegasus.planner.classes.Job
Updates all the profile namespaces with the information specified in
 list of profile objects passed.
updateReplacementTable(List, Job) - 
Method in class edu.isi.pegasus.planner.cluster.Horizontal
Updates the replacement table.
updateRightBound(long, TreeSet) - 
Method in class edu.isi.pegasus.planner.provisioner.Node
update LFT(latest finish time) of this task.
updateUpLen() - 
Method in class edu.isi.pegasus.planner.provisioner.Node
 
upLen - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
UPWARD_RANK - 
Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
The constant to be passed to the accessor functions to get or set the
 upward rank for a node.
URL - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The constant to be passed to the accessor functions to get or set the url.
URLParamConstants - Class in edu.isi.pegasus.planner.catalog.site.impl.myosg.util
This class contains the URL parameter ID's and utility methods for converting user input to param values.
URLParamConstants() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
Usage - Class in edu.isi.pegasus.planner.invocation
This class is contains some excerpt from the getrusage call.
Usage() - 
Constructor for class edu.isi.pegasus.planner.invocation.Usage
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
Usage(double, double, int, int, int, int, int, int, int, int, int, int, int, int, int, int) - 
Constructor for class edu.isi.pegasus.planner.invocation.Usage
Full c'tor: All values are provided.
usecEnd - 
Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
 
useCondorQuotingForArguments() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether we want to Condor Quote the
 arguments of the job or not.
usecStart - 
Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
 
useDeepStorageDirectoryStructure() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to have a deep storage directory
 structure or not while staging out data to the output site.
useDoubleNegative(String) - 
Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
Determines whether to use a doubleNegative or not.
useExtendedTimeStamp() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
It specifies whether to use the extended timestamp format for generation
 of timestamps that are used to create the random directory name, and for
 the classads generation.
useForceInTransfer() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
It specifies whether the underlying transfer mechanism being used should
 use the force option if available to transfer the files.
useFullPathToGridStarts(boolean) - 
Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
Setter method to control whether a full path to Gridstart should be
 returned while wrapping a job or not.
useFullPathToGridStarts(boolean) - 
Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
 
useFullPathToGridStarts(boolean) - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
 
useFullPathToGridStarts(boolean) - 
Method in interface edu.isi.pegasus.planner.code.GridStart
Setter method to control whether a full path to Gridstart should be 
 returned while wrapping a job or not.
useInvoke(Job, String, StringBuffer) - 
Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
Triggers the creation of the kickstart input file, that contains the
 the remote executable and the arguments with which it has to be invoked.
useInvokeInGridStart() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to use invoke in kickstart always
 or not.
USER_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The user who submitted the workflow.
USER_PROPERTY_FILENAME - 
Static variable in class edu.isi.pegasus.common.util.CommonProperties
Basename of the (new) file to read for user properties.
userExecutablesStagedForJob() - 
Method in class edu.isi.pegasus.planner.classes.Job
Returns whether user executables need to be staged for job or not.
UserOptions - Class in edu.isi.pegasus.planner.common
A Singleton wrapper around the
 PlannerOptions class to get hold
 of the options specified by the
 user to run Pegasus.
UserOptions(PlannerOptions) - 
Constructor for class edu.isi.pegasus.planner.common.UserOptions
The private constructor that initializes the user options.
UserPOSTScript - Class in edu.isi.pegasus.planner.code.gridstart
A user defined post script.
UserPOSTScript() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
The default constructor.
uses(String, File.LINK) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(List<File>, File.LINK) - 
Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(CatalogType) - 
Method in class edu.isi.pegasus.planner.dax.Transformation
Set the file or executable being used by the transformation
uses(List<CatalogType>) - 
Method in class edu.isi.pegasus.planner.dax.Transformation
Set the List of files and/or executables being used by the transformation
useThirdPartyTransferAlways() - 
Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useThirdPartyTransferAlways() - 
Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useThirdPartyTransferAlways() - 
Method in class edu.isi.pegasus.planner.transfer.implementation.T2
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useThirdPartyTransferAlways() - 
Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useThirdPartyTransferAlways() - 
Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useThirdPartyTransferAlways() - 
Method in interface edu.isi.pegasus.planner.transfer.Implementation
Return a boolean indicating whether the transfers to be done always in
 a third party transfer mode.
useTimestampForDirectoryStructure() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to use timestamp for directory
 name creation or not.
util_jm - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
util_jm - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
Utility - Class in edu.isi.pegasus.planner.common
A utility class that contains a few common utility/helper functions used in
 Pegasus.
Utility() - 
Constructor for class edu.isi.pegasus.planner.common.Utility
 
UUID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The key for UUID of the workflow.



V

v_7_1_0 - 
Static variable in class edu.isi.pegasus.common.util.CondorVersion
Predefined Constant for condor version 7.1.0
v_7_1_2 - 
Static variable in class edu.isi.pegasus.common.util.CondorVersion
Predefined Constant for condor version 7.1.2
v_7_1_3 - 
Static variable in class edu.isi.pegasus.common.util.CondorVersion
Predefined Constant for condor version 7.1.3
VALID_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Namespace
The key is a valid key and can be put in the profiles.
validHeader(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.SpaceUsageCallback
Returns a boolean indicating whether the token passed matches
 a header or not.
validState(String) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.NodeUsageCallback
Returns a boolean indicating whether the state is valid or not.
validState(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.TailStatd
Returns a boolean indicating whether the state is valid or not.
validTimeUnits(String) - 
Method in class edu.isi.pegasus.planner.visualize.nodeusage.Ploticus
Returns a boolean indicating if a valid time unit or not.
validTimeUnits(String) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Ploticus
Returns a boolean indicating if a valid time unit or not.
validTypesToString() - 
Static method in class edu.isi.pegasus.planner.classes.Profile
Returns a comma separated string containing the valid namespace types.
validUnit(char) - 
Method in class edu.isi.pegasus.planner.visualize.spaceusage.Space
Returns if a character is a valid unit or not
value - 
Variable in class edu.isi.pegasus.planner.classes.NameValue
stores the corresponding value to the name in the pair.
value - 
Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
Stores the corresponding value to the name in the pair.
valueOf(String) - 
Static method in enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.File.LINK
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
Returns the enum constant of this type with the specified name.
valueOf(String) - 
Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
Returns the enum constant of this type with the specified name.
values() - 
Static method in enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.File.LINK
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
Returns an array containing the constants of this enum type, in
the order they are declared.
values() - 
Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
Returns an array containing the constants of this enum type, in
the order they are declared.
VANILLA_JOBMANAGER_TYPE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
The jobmanager type associated with the compute jobs.
VANILLA_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
 
VANILLA_UNIVERSE - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The condor universe key value for vanilla universe.
VDS - 
Static variable in class edu.isi.pegasus.planner.classes.Profile
 
VDS2PegasusProperties - Class in edu.isi.pegasus.planner.client
A Central Properties class that keeps track of all the properties used by
 Pegasus.
VDS2PegasusProperties() - 
Constructor for class edu.isi.pegasus.planner.client.VDS2PegasusProperties
The default constructor.
VDS_HOME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
The name of the environment variable VDS_HOME.
VDS_HOME - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
The name of the environment variable VDS_HOME.
vdsArchToNMIArch(Arch) - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Returns the NMI Architecture object corresponding to the VDS Arch
 object
vdsArchToNMIArch(String) - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Returns the NMI Architecture object corresponding to the VDS Arch
 object
vdsArchToNMIArchMap() - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Singleton access to the architecture to NMI arch map.
vdsNS - 
Variable in class edu.isi.pegasus.planner.classes.Job
The Pegasus namespace variable.
vdsOsToNMIOS(Os) - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Returns the NMI OS object corresponding to the VDS Os
 object
vdsOsToNMIOS(String) - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Returns the NMI OS object corresponding to the VDS Os
 object
vdsOsToNMIOSMap() - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Singleton access to the os to NMI os map.
VDSPOSTScript - Class in edu.isi.pegasus.planner.code.gridstart
An abstract implementation of the interface, that is a superclass for
 all the VDS supplied postscripts.
VDSPOSTScript() - 
Constructor for class edu.isi.pegasus.planner.code.gridstart.VDSPOSTScript
The default constructor.
VDSSysInfo - Class in edu.isi.pegasus.planner.catalog.transformation.classes
This class keeps the system information associated with a
 resource or transformation.
VDSSysInfo(Arch, Os, String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
The secondary convenience constructor.
VDSSysInfo(String, String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Another convenience constructor that uses all entries as strings.
VDSSysInfo(String, String, String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
Another convenience constructor that uses all entries as strings.
VDSSysInfo(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
 
VDSSysInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
The default constructor.
VDSSysInfo2NMI - Class in edu.isi.pegasus.planner.catalog.classes
An Adapter class that translates the old ( VDS era ) Arch and Os objects
 to the new NMI based Architecture and OS objects.
VDSSysInfo2NMI() - 
Constructor for class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
 
vdsSysInfo2NMI(VDSSysInfo) - 
Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
Converts VDS SysInfo to NMI based SysInfo object
vdsToPegasusPropertiesTable() - 
Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
Singleton access to the transfer implementation table.
vdt_version - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
vdt_version - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
vectorToString(String, Vector) - 
Method in class edu.isi.pegasus.planner.classes.Data
It converts the contents of the Vector to a String and returns it.
vectorToString(String, Vector) - 
Method in class edu.isi.pegasus.planner.refiner.Engine
It prints the contents of the Vector, to a String with the first line being
 the heading.
vendorParserClass - 
Static variable in class edu.isi.pegasus.planner.client.DAXValidator
Default parser is the Xerces parser.
vendorParserClass - 
Static variable in class edu.isi.pegasus.planner.parser.InvocationParser
Default parser is the Xerces parser.
VERSION - 
Static variable in interface edu.isi.pegasus.common.credential.CredentialHandler
The version of the API being used.
VERSION - 
Static variable in class edu.isi.pegasus.common.logging.LogManager
The version of the Logging API
version() - 
Method in class edu.isi.pegasus.common.util.CondorVersion
Returns the condor version parsed by executing the condor_version 
 command.
VERSION - 
Static variable in class edu.isi.pegasus.common.util.Separator
This constant defines the separator that denotes a version range.
Version - Class in edu.isi.pegasus.common.util
This class solely defines the version numbers of PEGASUS.
Version() - 
Constructor for class edu.isi.pegasus.common.util.Version
C'tor: construct an element, which is empty anyway.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.catalog.SiteCatalog
The version of the API
version - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
 
VERSION - 
Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
The version of the API
VERSION - 
Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
The version of the API
version - 
Variable in class edu.isi.pegasus.planner.classes.Job
The version of the transformation.
version - 
Variable in class edu.isi.pegasus.planner.client.TCClient
 
VERSION - 
Static variable in interface edu.isi.pegasus.planner.cluster.Clusterer
The version number associated with this API of Code Generator.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.cluster.JobAggregator
The version number associated with this API of Job Aggregator.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.code.CodeGenerator
The version number associated with this API of Code Generator.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
The version number associated with this API of Code Generator.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.code.GridStart
The version number associated with this API of GridStart.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.code.POSTScript
The version number associated with this API of GridStart.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.namespace.aggregator.Aggregator
The version number associated with this API of Profile Aggregators.
VERSION - 
Static variable in class edu.isi.pegasus.planner.namespace.Namespace
The version number associated with this API of Profile Namespaces.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.parser.dax.Callback
The version of the Callback api
VERSION - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserved word "version".
VERSION - 
Static variable in interface edu.isi.pegasus.planner.partitioner.graph.Graph
The version number associated with this Graph API.
VERSION - 
Static variable in class edu.isi.pegasus.planner.partitioner.Partitioner
The version number associated with this API of Code Generator.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
The version number associated with this API Cleanup CleanupImplementation.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy
The version number associated with this API Cleanup CleanupStrategy.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.refiner.createdir.Implementation
The version number associated with this API.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.refiner.createdir.Strategy
The version number associated with this API Cleanup Strategy.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.refiner.Refiner
The version of the API.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.selector.ReplicaSelector
The version of this API.
VERSION - 
Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
The version number associated with this API of non java callout
 site selection.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.selector.SiteSelector
The version of the API of the Site Selector.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.transfer.Implementation
The version number associated with this API
VERSION - 
Static variable in interface edu.isi.pegasus.planner.transfer.SLS
The version associated with the API.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.visualize.Callback
The version of the API.
VERSION - 
Static variable in interface edu.isi.pegasus.planner.visualize.spaceusage.Plot
The version of this API
version - 
Variable in class VersionTask
member variable to maintain the version string.
VERSION_AD_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The class ad key for the version id.
VERSION_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The Key for the version id.
VersionNumber - Class in edu.isi.pegasus.planner.client
This class just prints the current version number on stdout.
VersionNumber(String) - 
Constructor for class edu.isi.pegasus.planner.client.VersionNumber
ctor: Constructs a new instance with the given application name.
VersionTask - Class in <Unnamed>
This class exists only for compilation-with-ant purpose.
VersionTask() - 
Constructor for class VersionTask
 
Vertical - Class in edu.isi.pegasus.planner.cluster
The vertical cluster, that extends the Default clusterer and topologically
 sorts the partition before clustering the jobs into aggregated jobs.
Vertical() - 
Constructor for class edu.isi.pegasus.planner.cluster.Vertical
The default constructor.
VERTICAL_CLUSTERING_CLASS - 
Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
The name of the class implementing vertical clustering.
vJobSubInfos - 
Variable in class edu.isi.pegasus.planner.classes.ADag
Vector of Job objects.
vo - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
 
VO_KEY - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.MYOSG
The name of the key that determines what VO to query for.
VO_OWN_PERCENT_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
VO_OWN_PERCENT_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
 
VO_OWN_VO_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
VO_OWN_VO_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteVOOwnershipInfo
 
VO_OWNERSHIP_INFO_ID - 
Static variable in interface edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteConstants
 
VO_OWNERSHIP_TAG - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.MYOSGSiteCatalogParser
 
voInfo - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
voNameID - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.util.URLParamConstants
 
VOOwnershipInfo - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteResourceInfo
 
VORS - Class in edu.isi.pegasus.planner.catalog.site.impl
The VORS implementation of the Site Catalog interface.
VORS() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.VORS
The default constructor.
VORSSiteCatalogUtil - Class in edu.isi.pegasus.planner.catalog.site.classes
 
VORSSiteCatalogUtil() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteCatalogUtil
 
VORSSiteInfo - Class in edu.isi.pegasus.planner.catalog.site.classes
 
VORSSiteInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
VORSVOInfo - Class in edu.isi.pegasus.planner.catalog.site.classes
 
VORSVOInfo() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.VORSVOInfo
 



W

warning(SAXParseException) - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
warning(SAXParseException) - 
Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler
Logs the warning messages in the SAX parser generates while
 validating the XML file against an XML Schema.
WARNING_MESSAGE_LEVEL - 
Static variable in class edu.isi.pegasus.common.logging.LogManager
The level value, to indicate a WARNING error message.
WARNING_MESSAGE_TYPE - 
Static variable in class edu.isi.pegasus.common.logging.logger.Default
The type value to indicate a WARNING message.
weight - 
Variable in class edu.isi.pegasus.planner.provisioner.Node
 
WF_NAME_AD_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The classad for the flow id.
WF_NAME_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The Key for the flow id.
WF_TIME_AD_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The classad for the timestamp.
WF_TIME_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The Key for the timestamp.
WF_TIMESTAMP_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
The Key for the timestamp.
WF_UUID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The classad for the  workflow uuid
WHEN_TO_TRANSFER_OUTPUT_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
The name of key that designates when to transfer output.
WHEN_TO_TRANSFER_OUTPUT_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The name of key that designates when to transfer output.
where() - 
Method in class edu.isi.pegasus.planner.client.DAXValidator
 
where() - 
Method in class edu.isi.pegasus.planner.parser.InvocationParser
 
WHITE_COLOR - 
Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
 
Whole - Class in edu.isi.pegasus.planner.partitioner
This partitioning technique considers the whole DAX as a single partition.
Whole(GraphNode, Map, PegasusProperties) - 
Constructor for class edu.isi.pegasus.planner.partitioner.Whole
The overloaded constructor.
WINDOWS - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
wntmp_loc - 
Variable in class edu.isi.pegasus.planner.catalog.site.classes.VORSSiteInfo
 
wntmp_loc - 
Variable in class edu.isi.pegasus.planner.catalog.site.impl.myosg.classes.MYOSGSiteInfoFacade
 
work(String) - 
Method in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
Callback whenever a line is read from the stream by the StreamGobbler.
work(String) - 
Method in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
Callback whenever a line is read from the stream by the StreamGobbler.
work(String) - 
Method in interface edu.isi.pegasus.common.util.StreamGobblerCallback
Callback whenever a line is read from the stream by the StreamGobbler.
work(String) - 
Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
Callback whenever a line is read from the stream by the StreamGobbler.
work(List, String) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Works on the command contained within chunk of lines.
work(List) - 
Method in class edu.isi.pegasus.planner.client.RCClient
Works on the command contained within one line.
work(String) - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
Callback whenever a line is read from the stream by the StreamGobbler.
WorkCatalog - Interface in edu.isi.pegasus.planner.catalog
The catalog interface to the Work Catalog, the erstwhile Work DB, that is
 populated by tailstatd and associates.
WorkCatalogException - Exception in edu.isi.pegasus.planner.catalog.work
Class to notify of failures.
WorkCatalogException() - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
 
WorkCatalogException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
Constructs a WorkCatalogException with the
 specified detailed message.
WorkCatalogException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
Constructs a WorkCatalogException with the
 specified detailed message and a cause.
WorkCatalogException(Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
Constructs a WorkCatalogException with the
 specified just a cause.
WORKDIR - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
The constant to be passed to the accessor functions to get or set the
 List of WorkDir objects.
WorkDir - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
This is a data class that is used to store information about the scratch
 work directory or the execution mount point on the remote pool.
WorkDir() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
The default constructor.
WORKDIR - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
The constant to be passed to the accessor functions to get or set the
 path to the work directory.
WORKDIR - 
Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
token value for the reserved word "workdir".
WORKDIRINFO - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
Array storing the names of the attributes that are stored with the
 work directory.
WORKER_NODE_DIRECTORY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
The directory in which job needs to execute on worker node tmp.
WORKER_PACKAGE_MAP - 
Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
The constant to be passed to the accessor functions to get or set the
 handle to the worker package maps
WorkerNodeFS - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes the WorkerNode Filesystem layout.
WorkerNodeFS() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
The default constructor.
WorkerNodeFS(WorkerNodeScratch, WorkerNodeStorage) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
The overloaded constructor.
WorkerNodeScratch - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes the scratch area on a head node.
WorkerNodeScratch() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
The default constructor
WorkerNodeScratch(StorageType) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
The overloaded constructor
WorkerNodeScratch(LocalDirectory, SharedDirectory) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
The overloaded constructor.
WorkerNodeStorage - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes the storage area on worker nodes.
WorkerNodeStorage() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
The default constructor
WorkerNodeStorage(StorageType) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
The overloaded constructor
WorkerNodeStorage(LocalDirectory, SharedDirectory) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
The overloaded constructor.
WorkerSharedDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
This data class describes the directory shared only amongst worker nodes .
WorkerSharedDirectory() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
The default constructor.
WorkerSharedDirectory(List<FileServer>, InternalMountPoint) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
The overloaded constructor
WorkFactory - Class in edu.isi.pegasus.planner.catalog.work
This factory loads a work catalog, as specified by the properties.
WorkFactory() - 
Constructor for class edu.isi.pegasus.planner.catalog.work.WorkFactory
 
WorkFactoryException - Exception in edu.isi.pegasus.planner.catalog.work
Class to notify of failures while instantiating Transformation Catalog
 implementations.
WorkFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
Constructs a WorkFactoryException with no detail
 message.
WorkFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
Constructs a WorkFactoryException with the specified detailed
 message.
WorkFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
Constructs a WorkFactoryException with the
 specified detailed message and a cause.
WorkFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
Constructs a WorkFactoryException with the
 specified detailed message and a cause.
WORKFLOW - 
Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
The constant string to write for work flow notifications.
WORKFLOW_ID_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
The attribute key for workflow id.
WORKFLOW_ID_PROPERTY - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
The property to be set for postscript to pick up workflow id
WorkflowMeasurements - Class in edu.isi.pegasus.planner.visualize
A container object that stores the measurements for each site on which
 the workflow was executed.
WorkflowMeasurements() - 
Constructor for class edu.isi.pegasus.planner.visualize.WorkflowMeasurements
The default constructor.
WorkflowMetrics - Class in edu.isi.pegasus.planner.classes
A Workflow metrics class that stores the metrics about the workflow.
WorkflowMetrics() - 
Constructor for class edu.isi.pegasus.planner.classes.WorkflowMetrics
The default constructor.
WorkingDir - Class in edu.isi.pegasus.planner.invocation
This class is transient for XML parsing.
WorkingDir() - 
Constructor for class edu.isi.pegasus.planner.invocation.WorkingDir
Default c'tor: Construct a hollow shell and allow further
 information to be added later.
WorkingDir(String) - 
Constructor for class edu.isi.pegasus.planner.invocation.WorkingDir
Constructs a piece of data.
wrapJobWithLocalPegasusLite(Job) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
Wraps the local universe jobs with a local Pegasus Lite wrapper to get
 around the Condor file IO bug for local universe job
wrapJobWithPegasusLite(Job, boolean) - 
Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
Generates a seqexec input file for the job.
write(Partition) - 
Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
Writes out a partition to the associate XML stream.
write(String) - 
Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
Writes out to the file.
writeAlias(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
Renders alias as xml
writeAttribute(Writer, String, String) - 
Method in class edu.isi.pegasus.common.util.XMLOutput
XML write helper method writes a quoted attribute onto a stream.
writeAttribute(String, String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeAttribute(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
Writes an attribute to the stream.
writeAttribute(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
Writes an attribute to the stream.
writeAttribute(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.partitioner.Partition
Writes an attribute to the stream.
writeAttribute2(Writer, String, String) - 
Method in class edu.isi.pegasus.common.util.XMLOutput
Saner XML write helper method writes a quoted attribute onto a
 stream.
writeAttributes() - 
Method in class edu.isi.pegasus.common.util.XMLWriter
Writes out the attributes of a given element to the writer
writeCData(String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeDagFileTail(DagInfo) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
It writes the relations making up the  DAG in the dag file and and closes
 the file handle to it.
writeData(String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeDOTFile(String, ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Writes out the DOT file in the submit directory.
writeDOTHeader(Writer, String) - 
Method in class edu.isi.pegasus.planner.classes.ADag
Writes out the static DOT Header.
writeHeader() - 
Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
Writes out the opening element of the xml document.
writeJobMapFile(String, ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
Writes out the job map file in the submit directory.
writeLine() - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeln(String) - 
Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
Writes out to the file.
writeln(String) - 
Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
Writes out to the file.
writeOutBraindump(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Writes out the metrics file for the workflow
writeOutBraindump(File, Partition, String, String) - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Writes out the braindump.txt file for a partition in the partition submit
 directory.
writeOutBraindumpFile(Map<String, String>) - 
Method in class edu.isi.pegasus.planner.code.generator.Braindump
Writes out the braindump.txt file for a workflow in the submit
 directory.
writeOutDAXReplicaStore(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Writes out the DAX replica store
writeOutMappings(Writer, ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
Writes out the job mappings for a workflow.
writeOutMetrics(PlannerMetrics) - 
Method in class edu.isi.pegasus.planner.client.CPlanner
Writes out the planner metrics to the global log.
writeOutMetrics() - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Returns a boolean indicating whether to write out the planner metrics
 or not.
writeOutMetricsFile(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Metrics
Writes out the workflow metrics file in the submit directory
writeOutNotifications(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Writes out the generator input file for the work-flow.
writeOutProperties(String) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Writes out the properties to a temporary file in the directory passed.
writeOutProperties(String, boolean) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Writes out the properties to a temporary file in the directory passed.
writeOutProperties(String, boolean, boolean) - 
Method in class edu.isi.pegasus.planner.common.PegasusProperties
Writes out the properties to a temporary file in the directory passed.
writeOutProperties(String) - 
Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
Writes out the properties to a temporary file in the directory passed.
writeOutRankings(File, Collection<Ranking>) - 
Method in class edu.isi.pegasus.planner.client.RankDAX
Writes out the ranking to the file.
writeOutStampedeEvents(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Writes out the stampedeEventGenerator events for the workflow.
writeOutWorkflowMetrics(ADag) - 
Method in class edu.isi.pegasus.planner.code.generator.Abstract
Writes out the workflow metrics file for the workflow.
writePartitionDax(Partition) - 
Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
It writes out a dax consisting of the jobs as specified in the partition.
writePartitionDax(Partition, int) - 
Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
It writes out a dax consisting of the jobs as specified in the partition.
writePartitionDax(Partition, int) - 
Method in class edu.isi.pegasus.planner.partitioner.MultipleLook
It writes out a dax consisting of the jobs as specified in the partition.
writePartitionDax(Partition, int) - 
Method in class edu.isi.pegasus.planner.partitioner.SingleLook
It writes out a dax consisting of the jobs as specified in the partition.
WriterCallback - Class in edu.isi.pegasus.planner.partitioner
This callback writes out a DAX file for each of the partitions,
 and also writes out a PDAX file that captures the relations
 between the partitions.
WriterCallback() - 
Constructor for class edu.isi.pegasus.planner.partitioner.WriterCallback
The default constructor.
writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
Writes to a FileWriter stream the stdin which goes into the magic script
 via standard input
writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
Writes to a FileWriter stream the stdin which goes into the magic script
 via standard input
writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.T2
Writes to a FileWriter stream the stdin which T2 takes via standard input.
writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - 
Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
Writes to a FileWriter stream the stdin which goes into the magic script
 via standard input
writeString(String) - 
Method in class edu.isi.pegasus.planner.code.generator.Shell
Writes a string to the associated write handle with the class
writeTC() - 
Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
 
writeTestLog(LogFormatter) - 
Method in class edu.isi.pegasus.common.logging.TestLogFormatter
 
writeToFile(String) - 
Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX File out of this object;
writeToSTDOUT() - 
Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX representation on STDOUT.
writeToWriter(Writer, boolean) - 
Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX representation and pipe it into the Writer
writeUnEscapedData(String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeXMLComment(String, boolean) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeXMLComment(String) - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeXMLHeader() - 
Method in class edu.isi.pegasus.common.util.XMLWriter
 
writeXMLHeader(Writer, String) - 
Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
Writes the header of the XML output.
writeXMLHeader(Writer, String, String) - 
Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
Writes the header of the XML output.



X

x(String, int) - 
Static method in class edu.isi.pegasus.common.util.Separator2Test
 
X509_IMPLEMENTING_CLASS - 
Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
The name of the class implementing the x509 credentials
X509_USER_PROXY_KEY - 
Static variable in class edu.isi.pegasus.common.credential.impl.Proxy
The name of the environment variable that specifies the path to the
 proxy.
X509_USER_PROXY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.ENV
The name of the environment variable that specifies the path to the
 proxy.
X509USERPROXY_KEY - 
Static variable in class edu.isi.pegasus.planner.namespace.Condor
The key that overrides the default x509 proxy location.
XBIT_DERIVATION_NS - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The derivation namespace for the setXBit  jobs.
XBIT_DERIVATION_NS - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The derivation namespace for the setXBit  jobs.
XBIT_DERIVATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The version number for the derivations for setXBit  jobs.
XBIT_DERIVATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The version number for the derivations for setXBit  jobs.
XBIT_EXECUTABLE_BASENAME - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The basename of the pegasus dirmanager  executable.
XBIT_EXECUTABLE_BASENAME - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The basename of the pegasus dirmanager  executable.
XBIT_TRANSFORMATION - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The logical name of the transformation that creates directories on the
 remote execution pools.
XBIT_TRANSFORMATION_NS - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The transformation namespace for the setXBit jobs.
XBIT_TRANSFORMATION_NS - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The transformation namespace for the setXBit jobs.
XBIT_TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
The version number for the derivations for setXBit  jobs.
XBIT_TRANSFORMATION_VERSION - 
Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
The version number for the derivations for setXBit  jobs.
XFORMATION_AD_KEY - 
Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
The classad for the complete transformation name.
XML - Class in edu.isi.pegasus.planner.catalog.site.impl.old
It gets the information about a pool by reading the pool config xml that is
 generated from querying mds or using the static information provided by the
 user at the submit host.
XML(String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.XML
The private constructor that is called only once, when the Singleton is
 invoked for the first time.
XML(String, String) - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.XML
The private constructor that is called to return a non singleton instance
 of the class.
XML - Class in edu.isi.pegasus.planner.catalog.site.impl
A back port to old site catalog schema for the current Site Catalog API
 
 This class parses XML documents that conform to site catalog schema version 2.
XML() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.XML
The default constructor.
XML3 - Class in edu.isi.pegasus.planner.catalog.site.impl
An implementation of the Site Catalog interface that is backed up by 
 an XML file conforming to site catalog xml schema version 3.
XML3() - 
Constructor for class edu.isi.pegasus.planner.catalog.site.impl.XML3
The default constructor.
XML_FORMAT - 
Static variable in class edu.isi.pegasus.planner.client.SCClient
The XML format.
XML_HEADER - 
Static variable in class edu.isi.pegasus.common.util.XMLWriter
 
XML_IMPLEMENTING_CLASS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
The name of the class that connects to an XML based Site Catalog.
XML_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
 
XML_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.client.SCClient
 
XML_NAMESPACE - 
Static variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
 
XML_READ_CLASS - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
 
XML_READ_VALUE - 
Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
Constants for xml pool read.
XML_VERSION - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
 
XML_VERSION - 
Static variable in class edu.isi.pegasus.planner.client.SCClient
 
XML_VERSION - 
Static variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
The version of the associated xml schema, to which the pdax files being
 written conform to.
XMLErrorHandler - Class in edu.isi.pegasus.planner.parser
This class handles the errors which occur while enforcing validation against
 the XML Schema.
XMLErrorHandler() - 
Constructor for class edu.isi.pegasus.planner.parser.XMLErrorHandler
The default constructor.
XMLOutput - Class in edu.isi.pegasus.common.util
This abstract class defines a common base for certain classes that
 deal with the generation of XML files.
XMLOutput() - 
Constructor for class edu.isi.pegasus.common.util.XMLOutput
 
XMLProducer - Interface in edu.isi.pegasus.planner.provenance.pasoa
A PASOA specific interface to generate various assertions as XML.
XMLProducerFactory - Class in edu.isi.pegasus.planner.provenance.pasoa.producer
The factory for instantiating an XMLProducer.
XMLProducerFactory() - 
Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
 
XMLProducerFactoryException - Exception in edu.isi.pegasus.planner.provenance.pasoa.producer
Class to notify of failures while instantiating XMLProducer implementations.
XMLProducerFactoryException(String) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
Constructs a XMLProducerFactoryException with no detail
 message.
XMLProducerFactoryException(String, String) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
Constructs a XMLProducerFactoryException with the specified detailed
 message.
XMLProducerFactoryException(String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
Constructs a XMLProducerFactoryException with the
 specified detailed message and a cause.
XMLProducerFactoryException(String, String, Throwable) - 
Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
Constructs a XMLProducerFactoryException with the
 specified detailed message and a cause.
XMLWriter - Class in edu.isi.pegasus.common.util
 
XMLWriter(Writer) - 
Constructor for class edu.isi.pegasus.common.util.XMLWriter
 
XMLWriter(Writer, String) - 
Constructor for class edu.isi.pegasus.common.util.XMLWriter
 



_

_ADD_BLOAT - 
Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
The variable that triggers generation of message id and the event id
 in the messages.
_AIX - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
_AMD64 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_entityIdMap - 
Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
 
_eventId - 
Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
 
_eventName - 
Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
 
_INTEL32 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_INTEL64 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_LINUX - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
_progName - 
Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
 
_SPARCV7 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_SPARCV9 - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_SUNOS - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
_table_ - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_table_ - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
_value_ - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
 
_value_ - 
Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 
_WINDOWS - 
Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
 


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