ID supermatcher-minscore2
AP supermatcher
CL ../../data/aligna.dna ../../data/tropomyosin.fasta -minscore 35
CL -outfile align -auto  -gapextend 1 -width 12 -send2 172 -send1 50
FI supermatcher.error
FP /.*BG089808/
FP /.*BG147728/
FI align
FC = 88
FP /Score: 38.0/
FP /BF056441          30 tattccattgcacaatttg     48/
FP /                     |.||||    || ||||||/
FP /AFULL             37 ttttcc----ca-aatttg     50/
FP /Score: 40.0/
FP /BE848719         102 ggtgttaaaac    112/
FP /                     ||| |||||||/
FP /AFULL             20 ggt-ttaaaac     29/
FP /Score: 41.0/
FP /BI817778           1 ccgggg--taccctaa     14/
FP /                     ||||||  |.|||.||/
FP /AFULL             31 ccggggttttcccaaa     46/
//
