ID align-supermatcher-sam
AP supermatcher
CL -word 7 -stdout -auto -aformat sam -sformat1 fastq-sanger
CL ../../data/test1_illumina.fastq
CL ../../data/illumina_adapter_primer.fa 
FI stderr
FI supermatcher.error
FP /No.*start points for.*_8_200_285_136 vs .*_Small_RNA_sequencing_primer/
FC = 754
FI stdout
FP /_427.*DpnII_Gex_A.*1_2.*6H7M3I9M.*CAGAGTTTTGCTCTTGTCC.*XXXIXFQXXXOIQSSXUFF/
FP /_437.*Small_RNA_3p_Adapter\t15.*1H7M.*CTGCTTG	SXSXXXX	AS:i:35.0	NM:i:0/
//
