Comparison

java.lang.Object
- org.biojava.nbio.phylo.Comparison

public class Comparison
extends java.lang.Object

Author:: willishf

Constructor Summary

Constructors
Constructor and Description

Comparison()

Constructors
Constructor and Description
`Comparison()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static boolean`	`isGap(char c)` DOCUMENT ME!
`static float`	`PID(java.lang.String seq1, java.lang.String seq2)` this is a gapped PID calculation
`static float`	`PID(java.lang.String seq1, java.lang.String seq2, int start, int end)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- Comparison
```
public Comparison()
```

Method Detail

PID

public static final float PID(java.lang.String seq1,
                              java.lang.String seq2)

this is a gapped PID calculation

Parameters:: s1 - SequenceI; s2 - SequenceI
Returns:: float

PID

public static final float PID(java.lang.String seq1,
                              java.lang.String seq2,
                              int start,
                              int end)

isGap
```
public static final boolean isGap(char c)
```
DOCUMENT ME!

Parameters:

c - DOCUMENT ME!

Returns:

DOCUMENT ME!

Class Comparison

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Comparison

Method Detail

PID

PID

isGap