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| MALDIquant-package | Quantitative Analysis of Mass Spectrometry Data |
| AbstractMassObject-class | Class "AbstractMassObject" |
| as.matrix-method | Class "AbstractMassObject" |
| binPeaks | Align Peaks into discrete bins. |
| calibrate | Calibrates intensity matrix. |
| calibrate-method | Calibrates intensity matrix. |
| createMassPeaks | Creates a MassPeaks object. |
| createMassSpectrum | Creates a MassSpectrum object. |
| detectPeaks | Detects peaks in a MassSpectrum object. |
| detectPeaks-method | Detects peaks in a MassSpectrum object. |
| determineWarpingFunctions | Determine warping functions of MassPeaks objects. |
| estimateBaseline | Estimates the baseline of a MassSpectrum object. |
| estimateBaseline-method | Estimates the baseline of a MassSpectrum object. |
| estimateNoise | Estimates the noise of a MassSpectrum object. |
| estimateNoise-method | Estimates the noise of a MassSpectrum object. |
| fiedler2009subset | Example Mass Spectra (raw) |
| filterPeaks | Removes less frequently peaks. |
| findEmptyMassObjects | Finds or removes empty AbstractMassObject objects in a list. |
| intensity | Class "AbstractMassObject" |
| intensity-method | Class "AbstractMassObject" |
| intensity<- | Class "AbstractMassObject" |
| intensity<--method | Class "AbstractMassObject" |
| intensityMatrix | Converts a list of AbstractMassObject objects into a matrix. |
| iplot | Interactive plot of MassSpectrum objects. |
| iplot-method | Interactive plot of MassSpectrum objects. |
| isEmpty | Class "AbstractMassObject" |
| isEmpty-method | Class "AbstractMassObject" |
| isMassObject | Tests for AbstractMassObject objects. |
| isMassObjectList | Tests a list of AbstractMassObject objects. |
| isMassPeaks | Tests for AbstractMassObject objects. |
| isMassPeaksList | Tests a list of AbstractMassObject objects. |
| isMassSpectrum | Tests for AbstractMassObject objects. |
| isMassSpectrumList | Tests a list of AbstractMassObject objects. |
| isRegular | Class "MassSpectrum" |
| isRegular-method | Class "MassSpectrum" |
| labelPeaks | Draws peak labels to plot. |
| labelPeaks-method | Draws peak labels to plot. |
| length-method | Class "AbstractMassObject" |
| lines-method | Class "AbstractMassObject" |
| ltrim | Trim an AbstractMassObject object. |
| ltrim-method | Trim an AbstractMassObject object. |
| MALDIquant | Quantitative Analysis of Mass Spectrometry Data |
| mass | Class "AbstractMassObject" |
| mass-method | Class "AbstractMassObject" |
| mass<- | Class "AbstractMassObject" |
| mass<--method | Class "AbstractMassObject" |
| MassPeaks | Class "MassPeaks" |
| MassPeaks-class | Class "MassPeaks" |
| MassSpectrum | Class "MassSpectrum" |
| MassSpectrum-class | Class "MassSpectrum" |
| mergeMassPeaks | Merges 'MassPeaks' or 'MassSpectrum' objects. |
| mergeMassSpectra | Merges 'MassPeaks' or 'MassSpectrum' objects. |
| metaData | Class "AbstractMassObject" |
| metaData-method | Class "AbstractMassObject" |
| metaData<- | Class "AbstractMassObject" |
| metaData<--method | Class "AbstractMassObject" |
| movingAverage | Moving Average Smoothing Filter |
| plot-method | Plots an AbstractMassObject object. |
| points-method | Class "AbstractMassObject" |
| referencePeaks | Creates a reference 'MassPeaks' object. |
| removeBaseline | Removes the baseline of a MassSpectrum object. |
| removeBaseline-method | Removes the baseline of a MassSpectrum object. |
| removeEmptyMassObjects | Finds or removes empty AbstractMassObject objects in a list. |
| rtrim | Trim an AbstractMassObject object. |
| rtrim-method | Trim an AbstractMassObject object. |
| savitzkyGolay | Savitzky-Golay Smoothing Filter |
| snr | Class "MassPeaks" |
| snr-method | Class "MassPeaks" |
| standardizeTotalIonCurrent | Standardizes the Total Ion Current of a list of AbstractMassObject objects. |
| standardizeTotalIonCurrent-method | Standardizes the Total Ion Current of a list of AbstractMassObject objects. |
| totalIonCurrent | Class "AbstractMassObject" |
| totalIonCurrent-method | Class "AbstractMassObject" |
| totalIonCurrent<- | Class "AbstractMassObject" |
| totalIonCurrent<--method | Class "AbstractMassObject" |
| transformIntensity | Transforms intensities of an AbstractMassObject object. |
| transformIntensity-method | Transforms intensities of an AbstractMassObject object. |
| trim | Trim an AbstractMassObject object. |
| trim-method | Trim an AbstractMassObject object. |
| warpMassPeaks | Run warping functions on AbstractMassObject objects. |
| warpMassSpectra | Run warping functions on AbstractMassObject objects. |
| [-method | Class "AbstractMassObject" |