AbstractMassObject-class
                        Class "AbstractMassObject"
MALDIquant-package      Quantitative Analysis of Mass Spectrometry Data
MassPeaks-class         Class "MassPeaks"
MassSpectrum-class      Class "MassSpectrum"
binPeaks                Align Peaks into discrete bins.
calibrate               Calibrates intensity matrix.
createMassPeaks         Creates a MassPeaks object.
createMassSpectrum      Creates a MassSpectrum object.
detectPeaks             Detects peaks in a MassSpectrum object.
determineWarpingFunctions
                        Determine warping functions of MassPeaks
                        objects.
estimateBaseline        Estimates the baseline of a MassSpectrum
                        object.
estimateNoise           Estimates the noise of a MassSpectrum object.
fiedler2009subset       Example Mass Spectra (raw)
filterPeaks             Removes less frequently peaks.
findEmptyMassObjects    Finds or removes empty AbstractMassObject
                        objects in a list.
intensityMatrix         Converts a list of AbstractMassObject objects
                        into a matrix.
iplot                   Interactive plot of MassSpectrum objects.
isMassObject            Tests for AbstractMassObject objects.
isMassObjectList        Tests a list of AbstractMassObject objects.
labelPeaks              Draws peak labels to plot.
ltrim                   Trim an AbstractMassObject object.
mergeMassSpectra        Merges 'MassPeaks' or 'MassSpectrum' objects.
movingAverage           Moving Average Smoothing Filter
plot,AbstractMassObject,missing-method
                        Plots an AbstractMassObject object.
referencePeaks          Creates a reference 'MassPeaks' object.
removeBaseline          Removes the baseline of a MassSpectrum object.
savitzkyGolay           Savitzky-Golay Smoothing Filter
standardizeTotalIonCurrent
                        Standardizes the Total Ion Current of a list of
                        AbstractMassObject objects.
transformIntensity      Transforms intensities of an AbstractMassObject
                        object.
warpMassSpectra         Run warping functions on AbstractMassObject
                        objects.
