tigger-package | tigger |
cleanSeqs | Clean up nucleotide sequences |
findNovelAlleles | Find novel alleles from repertoire sequencing data |
findUnmutatedCalls | Determine which calls represent an unmutated allele |
genotype | Example of an Inferred Genotype |
genotypeFasta | Return the nucleotide sequences of a genotype |
germline_ighv | Human IGHV germlines |
getMutatedPositions | Find the location of mutations in a sequence |
getMutCount | Determine the mutation counts from allele calls |
getPopularMutationCount | Find Frequent Sequences' Mutation Counts |
inferGenotype | Infer a subject-specific genotype |
insertPolymorphisms | Insert polymorphisms into a nucleotide sequence |
novel_df | Example of Analyzed Rep-Seq data |
plotGenotype | Show a colorful representation of a genotype |
plotNovel | Visualize evidence of novel V alleles |
readIgFasta | Read immunoglobulin sequences |
reassignAlleles | Correct allele calls based on a personalized genotype |
sample_db | Example human Rep-Seq data |
selectNovel | Select rows containing novel alleles |
sortAlleles | Sort allele names |
tigger | tigger |
updateAlleleNames | Update IGHV allele names |
writeFasta | Write to a fasta file |