Actual source code: petscdmplex.h

      1: /*
      2:   DMPlex, for parallel unstructured distributed mesh problems.
      3: */
      4: #if !defined(PETSCDMPLEX_H)
      5: #define PETSCDMPLEX_H

      7: #include <petscsection.h>
      8: #include <petscpartitioner.h>
      9: #include <petscdm.h>
     10: #include <petscdmplextypes.h>
     11: #include <petscdt.h>
     12: #include <petscfe.h>
     13: #include <petscfv.h>
     14: #include <petscsftypes.h>
     15: #include <petscdmfield.h>
     16: #include <petscviewer.h>

     18: PETSC_EXTERN PetscErrorCode PetscPartitionerDMPlexPartition(PetscPartitioner, DM, PetscSection, PetscSection, IS *);

     20: PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellList(DM, PetscInt, PetscInt, PetscInt, const PetscInt[]);
     21: PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellListParallel(DM, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscSF *, PetscInt **);
     22: PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellList(DM, PetscInt, const PetscReal[]);
     23: PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellListParallel(DM, PetscInt, PetscSF, const PetscReal[]);

     25: PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*);
     26: PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *);
     27: PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], DM*);
     28: PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallelPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], PetscSF *, PetscInt **, DM *);
     29: PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []);
     30: PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, DMPolytopeType, DM *);
     31: PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []);
     32: PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *);
     33: PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt);
     34: PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *);
     35: PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt);
     36: PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt);
     37: PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]);
     38: PETSC_EXTERN PetscErrorCode DMPlexGetConeTuple(DM, IS, PetscSection *, IS *);
     39: PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
     40: PETSC_EXTERN PetscErrorCode DMPlexRestoreConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
     41: PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursiveVertices(DM, IS, IS *);
     42: PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]);
     43: PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt);
     44: PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt);
     45: PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]);
     46: PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]);
     47: PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *);
     48: PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt);
     49: PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]);
     50: PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]);
     51: PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt);
     52: PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *);
     53: PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *);
     54: PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]);
     55: PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]);
     56: PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *);
     57: PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM);
     58: PETSC_EXTERN PetscErrorCode DMPlexStratify(DM);
     59: PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*);
     60: PETSC_EXTERN PetscErrorCode DMPlexOrientPoint(DM,PetscInt,PetscInt);
     61: PETSC_EXTERN PetscErrorCode DMPlexOrient(DM);
     62: PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool);
     63: PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*);
     64: PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*);
     65: PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*);
     66: PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
     67: PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
     68: PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*);
     69: PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*);
     70: PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*);
     71: PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*);
     72: PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
     73: PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
     74: PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*);

     76: /* Topological interpolation */
     77: PETSC_EXTERN const char * const DMPlexInterpolatedFlags[];
     78: /*E
     79:    DMPlexInterpolatedFlag - Describes level of topological interpolatedness.
     80:      It is a local or collective property depending on whether it is returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective().

     82: $  DMPLEX_INTERPOLATED_INVALID - Uninitialized value (internal use only; never returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective())
     83: $  DMPLEX_INTERPOLATED_NONE    - Mesh is not interpolated
     84: $  DMPLEX_INTERPOLATED_PARTIAL - Mesh is partially interpolated. This can e.g. mean DMPlex with cells, faces and vertices but no edges represented, or a mesh with mixed cones (see DMPlexStratify() for an example)
     85: $  DMPLEX_INTERPOLATED_MIXED   - Can be returned only by DMPlexIsInterpolatedCollective(), meaning that DMPlexIsInterpolated() returns different interpolatedness on different ranks
     86: $  DMPLEX_INTERPOLATED_FULL    - Mesh is fully interpolated

     88:    Level: intermediate

     90:    Developer Note:
     91:    Any additions/changes here MUST also be made in include/petsc/finclude/petscdmplex.h and src/dm/f90-mod/petscdmplex.h

     93: .seealso: DMPlexIsInterpolated(), DMPlexIsInterpolatedCollective(), DMPlexInterpolate(), DMPlexUninterpolate()
     94: E*/
     95: typedef enum {
     96:   DMPLEX_INTERPOLATED_INVALID = -1,
     97:   DMPLEX_INTERPOLATED_NONE = 0,
     98:   DMPLEX_INTERPOLATED_PARTIAL,
     99:   DMPLEX_INTERPOLATED_MIXED,
    100:   DMPLEX_INTERPOLATED_FULL
    101: } DMPlexInterpolatedFlag;
    102: PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *);
    103: PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *);
    104: PETSC_EXTERN PetscErrorCode DMPlexInterpolatePointSF(DM, PetscSF);
    105: PETSC_EXTERN PetscErrorCode DMPlexIsInterpolated(DM, DMPlexInterpolatedFlag *);
    106: PETSC_EXTERN PetscErrorCode DMPlexIsInterpolatedCollective(DM, DMPlexInterpolatedFlag *);

    108: PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *);
    109: PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *);
    110: PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *);
    111: PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *);
    112: PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *);
    113: PETSC_EXTERN PetscErrorCode DMPlexCreateLabelField(DM, DMLabel, Vec *);

    115: PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *);
    116: PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *);
    117: PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *);
    118: PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *);
    119: PETSC_EXTERN PetscErrorCode DMPlexGetPointDepth(DM, PetscInt, PetscInt *);
    120: PETSC_EXTERN PetscErrorCode DMPlexGetPointHeight(DM, PetscInt, PetscInt *);
    121: PETSC_EXTERN PetscErrorCode DMPlexGetCellTypeLabel(DM, DMLabel *);
    122: PETSC_EXTERN PetscErrorCode DMPlexGetCellType(DM, PetscInt, DMPolytopeType *);
    123: PETSC_EXTERN PetscErrorCode DMPlexSetCellType(DM, PetscInt, DMPolytopeType);
    124: PETSC_EXTERN PetscErrorCode DMPlexComputeCellTypes(DM);
    125: PETSC_EXTERN PetscErrorCode DMPlexInvertCell(DMPolytopeType, PetscInt[]);
    126: PETSC_EXTERN PetscErrorCode DMPlexReorderCell(DM, PetscInt, PetscInt[]);

    128: /* Topological Operations */
    129: PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    130: PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    131: PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    132: PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    133: PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    134: PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
    135: PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
    136: PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
    137: PETSC_EXTERN PetscErrorCode DMPlexGetCompressedClosure(DM, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscSection *, IS *, const PetscInt **);
    138: PETSC_EXTERN PetscErrorCode DMPlexRestoreCompressedClosure(DM, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscSection *, IS *, const PetscInt **);

    140: /*E
    141:    DMPlexTPSType - Type of triply-periodic surface for DMPlex

    143: $  DMPLEX_TPS_SCHWARZ_P - Schwarz Primitive surface, defined by the equation cos(x) + cos(y) + cos(z) = 0.
    144: $  DMPLEX_TPS_GYROID    - Gyroid surface, defined by the equation sin(x)cos(y) + sin(y)cos(z) + sin(z)cos(x) = 0

    146:    Level: intermediate

    148:    Developer Note:
    149:    Any additions/changes here MUST also be made in include/petsc/finclude/petscdmplex.h and src/dm/f90-mod/petscdmplex.h

    151: .seealso: DMPlexCreateTPSMesh()
    152: E*/
    153: typedef enum {
    154:   DMPLEX_TPS_SCHWARZ_P,
    155:   DMPLEX_TPS_GYROID
    156: } DMPlexTPSType;
    157: PETSC_EXTERN const char *const DMPlexTPSTypes[];

    159: /* Mesh Generation */
    160: PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *);
    161: PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM);
    162: PETSC_EXTERN PetscErrorCode DMPlexCreateCoordinateSpace(DM, PetscInt, void (*)(PetscInt, PetscInt, PetscInt,
    163:                                                         const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    164:                                                         const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    165:                                                         PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]));
    166: PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscReal, DM *);
    167: PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *);
    168: PETSC_EXTERN PetscErrorCode DMPlexCreateBoxSurfaceMesh(MPI_Comm, PetscInt, const PetscInt[], const PetscReal[], const PetscReal[], PetscBool, DM *);
    169: PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, PetscReal, DM *);
    170: PETSC_EXTERN PetscErrorCode DMPlexCreateBallMesh(MPI_Comm, PetscInt, PetscReal, DM *);
    171: PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, DMBoundaryType, DM *);
    172: PETSC_EXTERN PetscErrorCode DMPlexCreateTPSMesh(MPI_Comm, DMPlexTPSType, const PetscInt[], const DMBoundaryType[], PetscBool, PetscInt, PetscInt, PetscReal, DM *);
    173: PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *);
    174: PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeBoxMesh(MPI_Comm, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, PetscBool, DM *);
    175: PETSC_EXTERN PetscErrorCode DMPlexExtrude(DM, PetscInt, PetscReal, PetscBool, PetscBool, const PetscReal[], const PetscReal[], DM *);
    176: PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *);
    177: PETSC_EXTERN PetscErrorCode DMPlexInflateToGeomModel(DM);

    179: PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM);
    180: PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscInt);
    181: PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscInt);
    182: PETSC_EXTERN PetscErrorCode DMPlexCheckGeometry(DM);
    183: PETSC_EXTERN PetscErrorCode DMPlexCheckPointSF(DM);
    184: PETSC_EXTERN PetscErrorCode DMPlexCheckInterfaceCones(DM);
    185: PETSC_EXTERN PetscErrorCode DMPlexCheckCellShape(DM, PetscBool, PetscReal);
    186: PETSC_EXTERN PetscErrorCode DMPlexComputeOrthogonalQuality(DM, PetscFV, PetscReal, Vec *, DMLabel *);

    188: PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *);
    189: PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *);

    191: PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], const char[], PetscBool, DM *);
    192: PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *);
    193: PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *);
    194: PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *);
    195: PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *);
    196: PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *);
    197: PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *);
    198: PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *);
    199: PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *);
    200: PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *);
    201: PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *);
    202: PETSC_EXTERN PetscErrorCode DMPlexCreateEGADSFromFile(MPI_Comm, const char [], DM *);
    203: PETSC_EXTERN PetscErrorCode DMPlexCreateEGADSLiteFromFile(MPI_Comm, const char [], DM *);

    205: PETSC_EXTERN PetscErrorCode PetscViewerExodusIIOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *exo);
    206: PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetId(PetscViewer, int *);
    207: PETSC_EXTERN PetscErrorCode PetscViewerExodusIISetOrder(PetscViewer,PetscInt);
    208: PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetOrder(PetscViewer,PetscInt*);

    210: /* Mesh Partitioning and Distribution */
    211: PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
    212: PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *);
    213: PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner);
    214: PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *);
    215: PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel);
    216: PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel);
    217: PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel);
    218: PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel);
    219: PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *);
    220: PETSC_EXTERN PetscErrorCode DMPlexSetPartitionBalance(DM, PetscBool);
    221: PETSC_EXTERN PetscErrorCode DMPlexGetPartitionBalance(DM, PetscBool *);
    222: PETSC_EXTERN PetscErrorCode DMPlexIsDistributed(DM, PetscBool *);
    223: PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*);
    224: PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *);
    225: PETSC_EXTERN PetscErrorCode DMPlexGetOverlap(DM, PetscInt *);
    226: PETSC_EXTERN PetscErrorCode DMPlexDistributeGetDefault(DM, PetscBool *);
    227: PETSC_EXTERN PetscErrorCode DMPlexDistributeSetDefault(DM, PetscBool);
    228: PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec);
    229: PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *);
    230: PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**);
    231: PETSC_EXTERN PetscErrorCode DMPlexRebalanceSharedPoints(DM, PetscInt, PetscBool, PetscBool, PetscBool*);
    232: PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM);
    233: PETSC_EXTERN PetscErrorCode DMPlexGetGatherDM(DM, PetscSF*, DM*);
    234: PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, PetscSF*, DM*);
    235: PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*);
    236: PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**);
    237: PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool);
    238: PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*);
    239: PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]);
    240: PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF);
    241: PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *);

    243: PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *);
    244: PETSC_EXTERN PetscErrorCode DMPlexGetOrdering1D(DM, IS *);
    245: PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *);

    247: PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *);
    248: PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *);
    249: PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *);
    250: PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapLabel(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *);
    251: PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *);
    252: PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *);

    254: /* Submesh Support */
    255: PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, PetscBool, DM*);
    256: PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel, DMLabel *, DMLabel *, DM *, DM *);
    257: PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*);
    258: PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel);
    259: PETSC_EXTERN PetscErrorCode DMPlexGetSubpointIS(DM, IS *);

    261: PETSC_EXTERN PetscErrorCode DMGetEnclosureRelation(DM, DM, DMEnclosureType *);
    262: PETSC_EXTERN PetscErrorCode DMGetEnclosurePoint(DM, DM, DMEnclosureType, PetscInt, PetscInt *);

    264: PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel);
    265: PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM);
    266: PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel);
    267: PETSC_EXTERN PetscErrorCode DMPlexLabelAddFaceCells(DM, DMLabel);
    268: PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel);

    270: PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *);
    271: PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal);
    272: PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *);
    273: PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool);
    274: PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *));
    275: PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *));
    276: PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *);
    277: PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *);
    278: PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool);

    280: /* Support for cell-vertex meshes */
    281: PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *);
    282: PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *);

    284: /* Geometry Support */
    285: PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *);
    286: PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal);
    287: PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]);
    288: PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]);
    289: PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]);

    291: /* Point Location */
    292: typedef struct _PetscGridHash *PetscGridHash;
    293: PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *);
    294: PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []);
    295: PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []);
    296: PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []);
    297: PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *);
    298: PETSC_EXTERN PetscErrorCode DMPlexFindVertices(DM, Vec, PetscReal, IS *);

    300: /* FVM Support */
    301: PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []);
    302: PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *);
    303: PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *);
    304: PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *);

    306: /* FEM Support */
    307: PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *);
    308: PETSC_EXTERN PetscErrorCode DMPlexGetGeometryFVM(DM,Vec*,Vec*,PetscReal*);
    309: PETSC_EXTERN PetscErrorCode DMPlexGetGradientDM(DM,PetscFV,DM*);
    310: PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
    311: PETSC_EXTERN PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
    312: PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[],
    313:                                                                 PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec);
    314: PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
    315:                                                                      void (*)(PetscInt, PetscInt, PetscInt,
    316:                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    317:                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    318:                                                                               PetscReal, const PetscReal[], PetscInt, const PetscScalar[],
    319:                                                                               PetscScalar[]),
    320:                                                                      void *, Vec);
    321: PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
    322:                                                                        void (*)(PetscInt, PetscInt, PetscInt,
    323:                                                                                 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    324:                                                                                 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    325:                                                                                 PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[],
    326:                                                                                 PetscScalar[]),
    327:                                                                        void *, Vec);
    328: PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
    329:                                                               PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec);
    330: PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel);

    332: PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *);
    333: PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*);

    335: PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
    336: PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
    337: PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
    338: PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
    339: PETSC_EXTERN PetscErrorCode DMPlexShearGeometry(DM, DMDirection, PetscReal[]);
    340: PETSC_EXTERN PetscErrorCode DMPlexRemapGeometry(DM, PetscReal,
    341:                                                 void (*)(PetscInt, PetscInt, PetscInt,
    342:                                                          const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    343:                                                          const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    344:                                                          PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]));

    346: PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
    347: PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
    348: PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode);
    349: PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
    350: PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureGeneral(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
    351: PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]);
    352: PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]);
    353: PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
    354: PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]);
    355: PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection);
    356: PETSC_EXTERN PetscErrorCode DMPlexSetClosurePermutationTensor(DM, PetscInt, PetscSection);

    358: PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *);
    359: PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DMLabel, DM *);

    361: PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *);
    362: PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt);
    363: PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer);
    364: PETSC_EXTERN PetscErrorCode DMPlexGetGhostCellStratum(DM, PetscInt *, PetscInt *);
    365: PETSC_EXTERN PetscErrorCode DMPlexGetSimplexOrBoxCells(DM, PetscInt, PetscInt *, PetscInt *);
    366: PETSC_EXTERN PetscErrorCode DMPlexIsSimplex(DM, PetscBool *);

    368: PETSC_EXTERN PetscErrorCode DMPlexGetCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
    369: PETSC_EXTERN PetscErrorCode DMPlexRestoreCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
    370: PETSC_EXTERN PetscErrorCode DMPlexGetFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
    371: PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
    372: PETSC_EXTERN PetscErrorCode DMPlexGetFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);
    373: PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);

    375: PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *);
    376: PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal);

    378: typedef struct {
    379:   DM    dm;
    380:   Vec   u; /* The base vector for the Jacobian action J(u) x */
    381:   Mat   J; /* Preconditioner for testing */
    382:   void *user;
    383: } JacActionCtx;

    385: PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt);
    386: PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*);
    387: PETSC_EXTERN PetscErrorCode DMPlexGetActivePoint(DM, PetscInt*);
    388: PETSC_EXTERN PetscErrorCode DMPlexSetActivePoint(DM, PetscInt);
    389: PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec,
    390:                                                     void (**)(PetscInt, PetscInt, PetscInt,
    391:                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    392:                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    393:                                                               PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec);
    394: PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
    395: PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]);
    396: PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec);
    397: PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *);
    398: PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *);
    399: PETSC_EXTERN PetscErrorCode DMPlexComputeBdIntegral(DM, Vec, DMLabel, PetscInt, const PetscInt[],
    400:                                                     void (*)(PetscInt, PetscInt, PetscInt,
    401:                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    402:                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
    403:                                                              PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),
    404:                                                     PetscScalar *, void *);
    405: PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, PetscBool, Mat, void *);
    406: PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *);
    407: PETSC_EXTERN PetscErrorCode DMPlexComputeClementInterpolant(DM, Vec, Vec);
    408: PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec);
    409: PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *);
    410: PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *);
    411: PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *);

    413: PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, PetscInt, MatNullSpace *);
    414: PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *);

    416: PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *);
    417: PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *);
    418: PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *);
    419: PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *);
    420: PETSC_EXTERN PetscErrorCode DMPlexComputeBdResidualSingle(DM, PetscReal, PetscWeakForm, PetscFormKey, Vec, Vec, Vec);
    421: PETSC_EXTERN PetscErrorCode DMPlexComputeBdJacobianSingle(DM, PetscReal, PetscWeakForm, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, PetscReal, Mat, Mat);

    423: PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *);
    424: PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
    425: PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *);
    426: PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *);
    427: PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFEM(DM, PetscReal, Vec, Vec, void *);

    429: PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
    430: PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec);

    432: /* anchors */
    433: PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*);
    434: PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS);
    435: /* tree */
    436: PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM);
    437: PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*);
    438: PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
    439: PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*);
    440: PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []);
    441: PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]);
    442: PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *);
    443: PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]);
    444: PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *);
    445: PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *);
    446: PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal);

    448: PETSC_EXTERN PetscErrorCode DMPlexMonitorThroughput(DM, void *);

    450: /* natural order */
    451: PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *);
    452: PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF);
    453: PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *);
    454: PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec);
    455: PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec);
    456: PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec);
    457: PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec);

    459: /* mesh adaptation */
    460: PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *);
    461: PETSC_EXTERN PetscErrorCode DMPlexSnapToGeomModel(DM, PetscInt, PetscInt, const PetscScalar[], PetscScalar[]);
    462: PETSC_EXTERN PetscErrorCode DMPlexMetricSetFromOptions(DM);
    463: PETSC_EXTERN PetscErrorCode DMPlexMetricSetIsotropic(DM, PetscBool);
    464: PETSC_EXTERN PetscErrorCode DMPlexMetricIsIsotropic(DM, PetscBool *);
    465: PETSC_EXTERN PetscErrorCode DMPlexMetricSetUniform(DM, PetscBool);
    466: PETSC_EXTERN PetscErrorCode DMPlexMetricIsUniform(DM, PetscBool *);
    467: PETSC_EXTERN PetscErrorCode DMPlexMetricSetRestrictAnisotropyFirst(DM, PetscBool);
    468: PETSC_EXTERN PetscErrorCode DMPlexMetricRestrictAnisotropyFirst(DM, PetscBool *);
    469: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNoInsertion(DM, PetscBool);
    470: PETSC_EXTERN PetscErrorCode DMPlexMetricNoInsertion(DM, PetscBool *);
    471: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNoSwapping(DM, PetscBool);
    472: PETSC_EXTERN PetscErrorCode DMPlexMetricNoSwapping(DM, PetscBool *);
    473: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNoMovement(DM, PetscBool);
    474: PETSC_EXTERN PetscErrorCode DMPlexMetricNoMovement(DM, PetscBool *);
    475: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNoSurf(DM, PetscBool);
    476: PETSC_EXTERN PetscErrorCode DMPlexMetricNoSurf(DM, PetscBool *);
    477: PETSC_EXTERN PetscErrorCode DMPlexMetricSetMinimumMagnitude(DM, PetscReal);
    478: PETSC_EXTERN PetscErrorCode DMPlexMetricGetMinimumMagnitude(DM, PetscReal *);
    479: PETSC_EXTERN PetscErrorCode DMPlexMetricSetMaximumMagnitude(DM, PetscReal);
    480: PETSC_EXTERN PetscErrorCode DMPlexMetricGetMaximumMagnitude(DM, PetscReal *);
    481: PETSC_EXTERN PetscErrorCode DMPlexMetricSetMaximumAnisotropy(DM, PetscReal);
    482: PETSC_EXTERN PetscErrorCode DMPlexMetricGetMaximumAnisotropy(DM, PetscReal *);
    483: PETSC_EXTERN PetscErrorCode DMPlexMetricSetTargetComplexity(DM, PetscReal);
    484: PETSC_EXTERN PetscErrorCode DMPlexMetricGetTargetComplexity(DM, PetscReal *);
    485: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNormalizationOrder(DM, PetscReal);
    486: PETSC_EXTERN PetscErrorCode DMPlexMetricGetNormalizationOrder(DM, PetscReal *);
    487: PETSC_EXTERN PetscErrorCode DMPlexMetricSetGradationFactor(DM, PetscReal);
    488: PETSC_EXTERN PetscErrorCode DMPlexMetricGetGradationFactor(DM, PetscReal *);
    489: PETSC_EXTERN PetscErrorCode DMPlexMetricSetHausdorffNumber(DM, PetscReal);
    490: PETSC_EXTERN PetscErrorCode DMPlexMetricGetHausdorffNumber(DM, PetscReal *);
    491: PETSC_EXTERN PetscErrorCode DMPlexMetricSetVerbosity(DM, PetscInt);
    492: PETSC_EXTERN PetscErrorCode DMPlexMetricGetVerbosity(DM, PetscInt *);
    493: PETSC_EXTERN PetscErrorCode DMPlexMetricSetNumIterations(DM, PetscInt);
    494: PETSC_EXTERN PetscErrorCode DMPlexMetricGetNumIterations(DM, PetscInt *);
    495: PETSC_EXTERN PetscErrorCode DMPlexMetricCreate(DM, PetscInt, Vec *);
    496: PETSC_EXTERN PetscErrorCode DMPlexMetricCreateUniform(DM, PetscInt, PetscReal, Vec *);
    497: PETSC_EXTERN PetscErrorCode DMPlexMetricCreateIsotropic(DM, PetscInt, Vec, Vec *);
    498: PETSC_EXTERN PetscErrorCode DMPlexMetricEnforceSPD(DM, Vec, PetscBool, PetscBool, Vec *, Vec *);
    499: PETSC_EXTERN PetscErrorCode DMPlexMetricNormalize(DM, Vec, PetscBool, PetscBool, Vec *);
    500: PETSC_EXTERN PetscErrorCode DMPlexMetricAverage(DM, PetscInt, PetscReal[], Vec[], Vec *);
    501: PETSC_EXTERN PetscErrorCode DMPlexMetricAverage2(DM, Vec, Vec, Vec *);
    502: PETSC_EXTERN PetscErrorCode DMPlexMetricAverage3(DM, Vec, Vec, Vec, Vec *);
    503: PETSC_EXTERN PetscErrorCode DMPlexMetricIntersection(DM, PetscInt, Vec[], Vec *);
    504: PETSC_EXTERN PetscErrorCode DMPlexMetricIntersection2(DM, Vec, Vec, Vec *);
    505: PETSC_EXTERN PetscErrorCode DMPlexMetricIntersection3(DM, Vec, Vec, Vec, Vec *);

    507: PETSC_EXTERN PetscErrorCode DMPlexGlobalToLocalBasis(DM, Vec);
    508: PETSC_EXTERN PetscErrorCode DMPlexLocalToGlobalBasis(DM, Vec);
    509: PETSC_EXTERN PetscErrorCode DMPlexCreateBasisRotation(DM, PetscReal, PetscReal, PetscReal);

    511: /* storage version */
    512: #define DMPLEX_STORAGE_VERSION_STABLE "1.0.0"
    513: #define DMPLEX_STORAGE_VERSION_LATEST "2.0.0"

    515: PETSC_EXTERN PetscErrorCode DMPlexTopologyView(DM, PetscViewer);
    516: PETSC_EXTERN PetscErrorCode DMPlexCoordinatesView(DM, PetscViewer);
    517: PETSC_EXTERN PetscErrorCode DMPlexLabelsView(DM, PetscViewer);
    518: PETSC_EXTERN PetscErrorCode DMPlexSectionView(DM,PetscViewer,DM);
    519: PETSC_EXTERN PetscErrorCode DMPlexGlobalVectorView(DM,PetscViewer,DM,Vec);
    520: PETSC_EXTERN PetscErrorCode DMPlexLocalVectorView(DM,PetscViewer,DM,Vec);
    521: PETSC_EXTERN PetscErrorCode DMPlexVecView1D(DM, PetscInt, Vec[], PetscViewer);

    523: PETSC_EXTERN PetscErrorCode DMPlexTopologyLoad(DM, PetscViewer, PetscSF*);
    524: PETSC_EXTERN PetscErrorCode DMPlexCoordinatesLoad(DM, PetscViewer, PetscSF);
    525: PETSC_EXTERN PetscErrorCode DMPlexLabelsLoad(DM, PetscViewer, PetscSF);
    526: PETSC_EXTERN PetscErrorCode DMPlexSectionLoad(DM,PetscViewer,DM,PetscSF,PetscSF*,PetscSF*);
    527: PETSC_EXTERN PetscErrorCode DMPlexGlobalVectorLoad(DM,PetscViewer,DM,PetscSF,Vec);
    528: PETSC_EXTERN PetscErrorCode DMPlexLocalVectorLoad(DM,PetscViewer,DM,PetscSF,Vec);

    530: PETSC_EXTERN PetscErrorCode DMPlexGetLocalOffsets(DM, DMLabel, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscInt *, PetscInt *, PetscInt **);

    532: #endif