Actual source code: ex59.c

      1: static char help[] =  "This example illustrates the use of PCBDDC/FETI-DP and its customization.\n\n\
      2: Discrete system: 1D, 2D or 3D laplacian, discretized with spectral elements.\n\
      3: Spectral degree can be specified by passing values to -p option.\n\
      4: Global problem either with dirichlet boundary conditions on one side or in the pure neumann case (depending on runtime parameters).\n\
      5: Domain is [-nex,nex]x[-ney,ney]x[-nez,nez]: ne_ number of elements in _ direction.\n\
      6: Exaple usage: \n\
      7: 1D: mpiexec -n 4 ex59 -nex 7\n\
      8: 2D: mpiexec -n 4 ex59 -npx 2 -npy 2 -nex 2 -ney 2\n\
      9: 3D: mpiexec -n 4 ex59 -npx 2 -npy 2 -npz 1 -nex 2 -ney 2 -nez 1\n\
     10: Subdomain decomposition can be specified with -np_ parameters.\n\
     11: Dirichlet boundaries on one side by default:\n\
     12: it does not iterate on dirichlet nodes by default: if -usezerorows is passed in, it also iterates on Dirichlet nodes.\n\
     13: Pure Neumann case can be requested by passing in -pureneumann.\n\
     14: In the latter case, in order to avoid runtime errors during factorization, please specify also -coarse_redundant_pc_factor_zeropivot 0\n\n";

     16: #include <petscksp.h>
     17: #include <petscpc.h>
     18: #include <petscdm.h>
     19: #include <petscdmda.h>
     20: #include <petscblaslapack.h>
     21: #define DEBUG 0

     23: /* structure holding domain data */
     24: typedef struct {
     25:   /* communicator */
     26:   MPI_Comm gcomm;
     27:   /* space dimension */
     28:   PetscInt dim;
     29:   /* spectral degree */
     30:   PetscInt p;
     31:   /* subdomains per dimension */
     32:   PetscInt npx,npy,npz;
     33:   /* subdomain index in cartesian dimensions */
     34:   PetscInt ipx,ipy,ipz;
     35:   /* elements per dimension */
     36:   PetscInt nex,ney,nez;
     37:   /* local elements per dimension */
     38:   PetscInt nex_l,ney_l,nez_l;
     39:   /* global number of dofs per dimension */
     40:   PetscInt xm,ym,zm;
     41:   /* local number of dofs per dimension */
     42:   PetscInt xm_l,ym_l,zm_l;
     43:   /* starting global indexes for subdomain in lexicographic ordering */
     44:   PetscInt startx,starty,startz;
     45:   /* pure Neumann problem */
     46:   PetscBool pure_neumann;
     47:   /* Dirichlet BC implementation */
     48:   PetscBool DBC_zerorows;
     49:   /* Scaling factor for subdomain */
     50:   PetscScalar scalingfactor;
     51:   PetscBool   testkspfetidp;
     52: } DomainData;

     54: /* structure holding GLL data */
     55: typedef struct {
     56:   /* GLL nodes */
     57:   PetscReal   *zGL;
     58:   /* GLL weights */
     59:   PetscScalar *rhoGL;
     60:   /* aux_mat */
     61:   PetscScalar **A;
     62:   /* Element matrix */
     63:   Mat elem_mat;
     64: } GLLData;

     66: static PetscErrorCode BuildCSRGraph(DomainData dd, PetscInt **xadj, PetscInt **adjncy)
     67: {
     68:   PetscInt       *xadj_temp,*adjncy_temp;
     69:   PetscInt       i,j,k,ii,jj,kk,iindex,count_adj;
     70:   PetscInt       istart_csr,iend_csr,jstart_csr,jend_csr,kstart_csr,kend_csr;
     71:   PetscBool      internal_node;

     73:   /* first count dimension of adjncy */
     75:   count_adj=0;
     76:   for (k=0; k<dd.zm_l; k++) {
     77:     internal_node = PETSC_TRUE;
     78:     kstart_csr    = k>0 ? k-1 : k;
     79:     kend_csr      = k<dd.zm_l-1 ? k+2 : k+1;
     80:     if (k == 0 || k == dd.zm_l-1) {
     81:       internal_node = PETSC_FALSE;
     82:       kstart_csr    = k;
     83:       kend_csr      = k+1;
     84:     }
     85:     for (j=0; j<dd.ym_l; j++) {
     86:       jstart_csr = j>0 ? j-1 : j;
     87:       jend_csr   = j<dd.ym_l-1 ? j+2 : j+1;
     88:       if (j == 0 || j == dd.ym_l-1) {
     89:         internal_node = PETSC_FALSE;
     90:         jstart_csr    = j;
     91:         jend_csr      = j+1;
     92:       }
     93:       for (i=0; i<dd.xm_l; i++) {
     94:         istart_csr = i>0 ? i-1 : i;
     95:         iend_csr   = i<dd.xm_l-1 ? i+2 : i+1;
     96:         if (i == 0 || i == dd.xm_l-1) {
     97:           internal_node = PETSC_FALSE;
     98:           istart_csr    = i;
     99:           iend_csr      = i+1;
    100:         }
    101:         if (internal_node) {
    102:           istart_csr = i;
    103:           iend_csr   = i+1;
    104:           jstart_csr = j;
    105:           jend_csr   = j+1;
    106:           kstart_csr = k;
    107:           kend_csr   = k+1;
    108:         }
    109:         for (kk=kstart_csr;kk<kend_csr;kk++) {
    110:           for (jj=jstart_csr;jj<jend_csr;jj++) {
    111:             for (ii=istart_csr;ii<iend_csr;ii++) {
    112:               count_adj=count_adj+1;
    113:             }
    114:           }
    115:         }
    116:       }
    117:     }
    118:   }
    119:   PetscMalloc1(dd.xm_l*dd.ym_l*dd.zm_l+1,&xadj_temp);
    120:   PetscMalloc1(count_adj,&adjncy_temp);

    122:   /* now fill CSR data structure */
    123:   count_adj=0;
    124:   for (k=0; k<dd.zm_l; k++) {
    125:     internal_node = PETSC_TRUE;
    126:     kstart_csr    = k>0 ? k-1 : k;
    127:     kend_csr      = k<dd.zm_l-1 ? k+2 : k+1;
    128:     if (k == 0 || k == dd.zm_l-1) {
    129:       internal_node = PETSC_FALSE;
    130:       kstart_csr    = k;
    131:       kend_csr      = k+1;
    132:     }
    133:     for (j=0; j<dd.ym_l; j++) {
    134:       jstart_csr = j>0 ? j-1 : j;
    135:       jend_csr   = j<dd.ym_l-1 ? j+2 : j+1;
    136:       if (j == 0 || j == dd.ym_l-1) {
    137:         internal_node = PETSC_FALSE;
    138:         jstart_csr    = j;
    139:         jend_csr      = j+1;
    140:       }
    141:       for (i=0; i<dd.xm_l; i++) {
    142:         istart_csr = i>0 ? i-1 : i;
    143:         iend_csr   = i<dd.xm_l-1 ? i+2 : i+1;
    144:         if (i == 0 || i == dd.xm_l-1) {
    145:           internal_node = PETSC_FALSE;
    146:           istart_csr    = i;
    147:           iend_csr      = i+1;
    148:         }
    149:         iindex            = k*dd.xm_l*dd.ym_l+j*dd.xm_l+i;
    150:         xadj_temp[iindex] = count_adj;
    151:         if (internal_node) {
    152:           istart_csr = i;
    153:           iend_csr   = i+1;
    154:           jstart_csr = j;
    155:           jend_csr   = j+1;
    156:           kstart_csr = k;
    157:           kend_csr   = k+1;
    158:         }
    159:         for (kk=kstart_csr; kk<kend_csr; kk++) {
    160:           for (jj=jstart_csr; jj<jend_csr; jj++) {
    161:             for (ii=istart_csr; ii<iend_csr; ii++) {
    162:               iindex = kk*dd.xm_l*dd.ym_l+jj*dd.xm_l+ii;

    164:               adjncy_temp[count_adj] = iindex;
    165:               count_adj              = count_adj+1;
    166:             }
    167:           }
    168:         }
    169:       }
    170:     }
    171:   }
    172:   xadj_temp[dd.xm_l*dd.ym_l*dd.zm_l] = count_adj;

    174:   *xadj   = xadj_temp;
    175:   *adjncy = adjncy_temp;
    176:   return 0;
    177: }

    179: static PetscErrorCode ComputeSpecialBoundaryIndices(DomainData dd,IS *dirichlet,IS *neumann)
    180: {
    181:   IS             temp_dirichlet=0,temp_neumann=0;
    182:   PetscInt       localsize,i,j,k,*indices;
    183:   PetscBool      *touched;

    186:   localsize = dd.xm_l*dd.ym_l*dd.zm_l;

    188:   PetscMalloc1(localsize,&indices);
    189:   PetscMalloc1(localsize,&touched);
    190:   for (i=0; i<localsize; i++) touched[i] = PETSC_FALSE;

    192:   if (dirichlet) {
    193:     i = 0;
    194:     /* west boundary */
    195:     if (dd.ipx == 0) {
    196:       for (k=0;k<dd.zm_l;k++) {
    197:         for (j=0;j<dd.ym_l;j++) {
    198:           indices[i]=k*dd.ym_l*dd.xm_l+j*dd.xm_l;
    199:           touched[indices[i]]=PETSC_TRUE;
    200:           i++;
    201:         }
    202:       }
    203:     }
    204:     ISCreateGeneral(dd.gcomm,i,indices,PETSC_COPY_VALUES,&temp_dirichlet);
    205:   }
    206:   if (neumann) {
    207:     i = 0;
    208:     /* west boundary */
    209:     if (dd.ipx == 0) {
    210:       for (k=0;k<dd.zm_l;k++) {
    211:         for (j=0;j<dd.ym_l;j++) {
    212:           indices[i]=k*dd.ym_l*dd.xm_l+j*dd.xm_l;
    213:           if (!touched[indices[i]]) {
    214:             touched[indices[i]]=PETSC_TRUE;
    215:             i++;
    216:           }
    217:         }
    218:       }
    219:     }
    220:     /* east boundary */
    221:     if (dd.ipx == dd.npx-1) {
    222:       for (k=0;k<dd.zm_l;k++) {
    223:         for (j=0;j<dd.ym_l;j++) {
    224:           indices[i]=k*dd.ym_l*dd.xm_l+j*dd.xm_l+dd.xm_l-1;
    225:           if (!touched[indices[i]]) {
    226:             touched[indices[i]]=PETSC_TRUE;
    227:             i++;
    228:           }
    229:         }
    230:       }
    231:     }
    232:     /* south boundary */
    233:     if (dd.ipy == 0 && dd.dim > 1) {
    234:       for (k=0;k<dd.zm_l;k++) {
    235:         for (j=0;j<dd.xm_l;j++) {
    236:           indices[i]=k*dd.ym_l*dd.xm_l+j;
    237:           if (!touched[indices[i]]) {
    238:             touched[indices[i]]=PETSC_TRUE;
    239:             i++;
    240:           }
    241:         }
    242:       }
    243:     }
    244:     /* north boundary */
    245:     if (dd.ipy == dd.npy-1 && dd.dim > 1) {
    246:       for (k=0;k<dd.zm_l;k++) {
    247:         for (j=0;j<dd.xm_l;j++) {
    248:           indices[i]=k*dd.ym_l*dd.xm_l+(dd.ym_l-1)*dd.xm_l+j;
    249:           if (!touched[indices[i]]) {
    250:             touched[indices[i]]=PETSC_TRUE;
    251:             i++;
    252:           }
    253:         }
    254:       }
    255:     }
    256:     /* bottom boundary */
    257:     if (dd.ipz == 0 && dd.dim > 2) {
    258:       for (k=0;k<dd.ym_l;k++) {
    259:         for (j=0;j<dd.xm_l;j++) {
    260:           indices[i]=k*dd.xm_l+j;
    261:           if (!touched[indices[i]]) {
    262:             touched[indices[i]]=PETSC_TRUE;
    263:             i++;
    264:           }
    265:         }
    266:       }
    267:     }
    268:     /* top boundary */
    269:     if (dd.ipz == dd.npz-1 && dd.dim > 2) {
    270:       for (k=0;k<dd.ym_l;k++) {
    271:         for (j=0;j<dd.xm_l;j++) {
    272:           indices[i]=(dd.zm_l-1)*dd.ym_l*dd.xm_l+k*dd.xm_l+j;
    273:           if (!touched[indices[i]]) {
    274:             touched[indices[i]]=PETSC_TRUE;
    275:             i++;
    276:           }
    277:         }
    278:       }
    279:     }
    280:     ISCreateGeneral(dd.gcomm,i,indices,PETSC_COPY_VALUES,&temp_neumann);
    281:   }
    282:   if (dirichlet) *dirichlet = temp_dirichlet;
    283:   if (neumann) *neumann = temp_neumann;
    284:   PetscFree(indices);
    285:   PetscFree(touched);
    286:   return 0;
    287: }

    289: static PetscErrorCode ComputeMapping(DomainData dd,ISLocalToGlobalMapping *isg2lmap)
    290: {
    291:   DM                     da;
    292:   AO                     ao;
    293:   DMBoundaryType         bx = DM_BOUNDARY_NONE,by = DM_BOUNDARY_NONE, bz = DM_BOUNDARY_NONE;
    294:   DMDAStencilType        stype = DMDA_STENCIL_BOX;
    295:   ISLocalToGlobalMapping temp_isg2lmap;
    296:   PetscInt               i,j,k,ig,jg,kg,lindex,gindex,localsize;
    297:   PetscInt               *global_indices;

    300:   /* Not an efficient mapping: this function computes a very simple lexicographic mapping
    301:      just to illustrate the creation of a MATIS object */
    302:   localsize = dd.xm_l*dd.ym_l*dd.zm_l;
    303:   PetscMalloc1(localsize,&global_indices);
    304:   for (k=0; k<dd.zm_l; k++) {
    305:     kg=dd.startz+k;
    306:     for (j=0; j<dd.ym_l; j++) {
    307:       jg=dd.starty+j;
    308:       for (i=0; i<dd.xm_l; i++) {
    309:         ig                    =dd.startx+i;
    310:         lindex                =k*dd.xm_l*dd.ym_l+j*dd.xm_l+i;
    311:         gindex                =kg*dd.xm*dd.ym+jg*dd.xm+ig;
    312:         global_indices[lindex]=gindex;
    313:       }
    314:     }
    315:   }
    316:   if (dd.dim==3) {
    317:     DMDACreate3d(dd.gcomm,bx,by,bz,stype,dd.xm,dd.ym,dd.zm,PETSC_DECIDE,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,NULL,&da);
    318:   } else if (dd.dim==2) {
    319:     DMDACreate2d(dd.gcomm,bx,by,stype,dd.xm,dd.ym,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,&da);
    320:   } else {
    321:     DMDACreate1d(dd.gcomm,bx,dd.xm,1,1,NULL,&da);
    322:   }
    323:   DMSetFromOptions(da);
    324:   DMSetUp(da);
    325:   DMDASetAOType(da,AOMEMORYSCALABLE);
    326:   DMDAGetAO(da,&ao);
    327:   AOApplicationToPetsc(ao,dd.xm_l*dd.ym_l*dd.zm_l,global_indices);
    328:   ISLocalToGlobalMappingCreate(dd.gcomm,1,localsize,global_indices,PETSC_OWN_POINTER,&temp_isg2lmap);
    329:   DMDestroy(&da);
    330:   *isg2lmap = temp_isg2lmap;
    331:   return 0;
    332: }
    333: static PetscErrorCode ComputeSubdomainMatrix(DomainData dd, GLLData glldata, Mat *local_mat)
    334: {
    335:   PetscInt       localsize,zloc,yloc,xloc,auxnex,auxney,auxnez;
    336:   PetscInt       ie,je,ke,i,j,k,ig,jg,kg,ii,ming;
    337:   PetscInt       *indexg,*cols,*colsg;
    338:   PetscScalar    *vals;
    339:   Mat            temp_local_mat,elem_mat_DBC=0,*usedmat;
    340:   IS             submatIS;

    343:   MatGetSize(glldata.elem_mat,&i,&j);
    344:   PetscMalloc1(i,&indexg);
    345:   PetscMalloc1(i,&colsg);
    346:   /* get submatrix of elem_mat without dirichlet nodes */
    347:   if (!dd.pure_neumann && !dd.DBC_zerorows && !dd.ipx) {
    348:     xloc = dd.p+1;
    349:     yloc = 1;
    350:     zloc = 1;
    351:     if (dd.dim>1) yloc = dd.p+1;
    352:     if (dd.dim>2) zloc = dd.p+1;
    353:     ii = 0;
    354:     for (k=0;k<zloc;k++) {
    355:       for (j=0;j<yloc;j++) {
    356:         for (i=1;i<xloc;i++) {
    357:           indexg[ii]=k*xloc*yloc+j*xloc+i;
    358:           ii++;
    359:         }
    360:       }
    361:     }
    362:     ISCreateGeneral(PETSC_COMM_SELF,ii,indexg,PETSC_COPY_VALUES,&submatIS);
    363:     MatCreateSubMatrix(glldata.elem_mat,submatIS,submatIS,MAT_INITIAL_MATRIX,&elem_mat_DBC);
    364:     ISDestroy(&submatIS);
    365:   }

    367:   /* Assemble subdomain matrix */
    368:   localsize = dd.xm_l*dd.ym_l*dd.zm_l;
    369:   MatCreate(PETSC_COMM_SELF,&temp_local_mat);
    370:   MatSetSizes(temp_local_mat,localsize,localsize,localsize,localsize);
    371:   MatSetOptionsPrefix(temp_local_mat,"subdomain_");
    372:   /* set local matrices type: here we use SEQSBAIJ primarily for testing purpose */
    373:   /* in order to avoid conversions inside the BDDC code, use SeqAIJ if possible */
    374:   if (dd.DBC_zerorows && !dd.ipx) { /* in this case, we need to zero out some of the rows, so use seqaij */
    375:     MatSetType(temp_local_mat,MATSEQAIJ);
    376:   } else {
    377:     MatSetType(temp_local_mat,MATSEQSBAIJ);
    378:   }
    379:   MatSetFromOptions(temp_local_mat);

    381:   i = PetscPowRealInt(3.0*(dd.p+1.0),dd.dim);

    383:   MatSeqAIJSetPreallocation(temp_local_mat,i,NULL);      /* very overestimated */
    384:   MatSeqSBAIJSetPreallocation(temp_local_mat,1,i,NULL);      /* very overestimated */
    385:   MatSeqBAIJSetPreallocation(temp_local_mat,1,i,NULL);      /* very overestimated */
    386:   MatSetOption(temp_local_mat,MAT_KEEP_NONZERO_PATTERN,PETSC_TRUE);

    388:   yloc = dd.p+1;
    389:   zloc = dd.p+1;
    390:   if (dd.dim < 3) zloc = 1;
    391:   if (dd.dim < 2) yloc = 1;

    393:   auxnez = dd.nez_l;
    394:   auxney = dd.ney_l;
    395:   auxnex = dd.nex_l;
    396:   if (dd.dim < 3) auxnez = 1;
    397:   if (dd.dim < 2) auxney = 1;

    399:   for (ke=0; ke<auxnez; ke++) {
    400:     for (je=0; je<auxney; je++) {
    401:       for (ie=0; ie<auxnex; ie++) {
    402:         /* customize element accounting for BC */
    403:         xloc    = dd.p+1;
    404:         ming    = 0;
    405:         usedmat = &glldata.elem_mat;
    406:         if (!dd.pure_neumann && !dd.DBC_zerorows && !dd.ipx) {
    407:           if (ie == 0) {
    408:             xloc    = dd.p;
    409:             usedmat = &elem_mat_DBC;
    410:           } else {
    411:             ming    = -1;
    412:             usedmat = &glldata.elem_mat;
    413:           }
    414:         }
    415:         /* local to the element/global to the subdomain indexing */
    416:         for (k=0; k<zloc; k++) {
    417:           kg = ke*dd.p+k;
    418:           for (j=0; j<yloc; j++) {
    419:             jg = je*dd.p+j;
    420:             for (i=0; i<xloc; i++) {
    421:               ig         = ie*dd.p+i+ming;
    422:               ii         = k*xloc*yloc+j*xloc+i;
    423:               indexg[ii] = kg*dd.xm_l*dd.ym_l+jg*dd.xm_l+ig;
    424:             }
    425:           }
    426:         }
    427:         /* Set values */
    428:         for (i=0; i<xloc*yloc*zloc; i++) {
    429:           MatGetRow(*usedmat,i,&j,(const PetscInt**)&cols,(const PetscScalar**)&vals);
    430:           for (k=0; k<j; k++) colsg[k] = indexg[cols[k]];
    431:           MatSetValues(temp_local_mat,1,&indexg[i],j,colsg,vals,ADD_VALUES);
    432:           MatRestoreRow(*usedmat,i,&j,(const PetscInt**)&cols,(const PetscScalar**)&vals);
    433:         }
    434:       }
    435:     }
    436:   }
    437:   PetscFree(indexg);
    438:   PetscFree(colsg);
    439:   MatAssemblyBegin(temp_local_mat,MAT_FINAL_ASSEMBLY);
    440:   MatAssemblyEnd  (temp_local_mat,MAT_FINAL_ASSEMBLY);
    441: #if DEBUG
    442:   {
    443:     Vec       lvec,rvec;
    444:     PetscReal norm;
    445:     MatCreateVecs(temp_local_mat,&lvec,&rvec);
    446:     VecSet(lvec,1.0);
    447:     MatMult(temp_local_mat,lvec,rvec);
    448:     VecNorm(rvec,NORM_INFINITY,&norm);
    449:     VecDestroy(&lvec);
    450:     VecDestroy(&rvec);
    451:   }
    452: #endif
    453:   *local_mat = temp_local_mat;
    454:   MatDestroy(&elem_mat_DBC);
    455:   return 0;
    456: }

    458: static PetscErrorCode GLLStuffs(DomainData dd, GLLData *glldata)
    459: {
    460:   PetscReal      *M,si;
    461:   PetscScalar    x,z0,z1,z2,Lpj,Lpr,rhoGLj,rhoGLk;
    462:   PetscBLASInt   pm1,lierr;
    463:   PetscInt       i,j,n,k,s,r,q,ii,jj,p=dd.p;
    464:   PetscInt       xloc,yloc,zloc,xyloc,xyzloc;

    467:   /* Gauss-Lobatto-Legendre nodes zGL on [-1,1] */
    468:   PetscCalloc1(p+1,&glldata->zGL);

    470:   glldata->zGL[0]=-1.0;
    471:   glldata->zGL[p]= 1.0;
    472:   if (p > 1) {
    473:     if (p == 2) glldata->zGL[1]=0.0;
    474:     else {
    475:       PetscMalloc1(p-1,&M);
    476:       for (i=0; i<p-1; i++) {
    477:         si  = (PetscReal)(i+1.0);
    478:         M[i]=0.5*PetscSqrtReal(si*(si+2.0)/((si+0.5)*(si+1.5)));
    479:       }
    480:       pm1  = p-1;
    481:       PetscFPTrapPush(PETSC_FP_TRAP_OFF);
    482:       PetscStackCallBLAS("LAPACKsteqr",LAPACKsteqr_("N",&pm1,&glldata->zGL[1],M,&x,&pm1,M,&lierr));
    484:       PetscFPTrapPop();
    485:       PetscFree(M);
    486:     }
    487:   }

    489:   /* Weights for 1D quadrature */
    490:   PetscMalloc1(p+1,&glldata->rhoGL);

    492:   glldata->rhoGL[0]=2.0/(PetscScalar)(p*(p+1.0));
    493:   glldata->rhoGL[p]=glldata->rhoGL[0];
    494:   z2 = -1;                      /* Dummy value to avoid -Wmaybe-initialized */
    495:   for (i=1; i<p; i++) {
    496:     x  = glldata->zGL[i];
    497:     z0 = 1.0;
    498:     z1 = x;
    499:     for (n=1; n<p; n++) {
    500:       z2 = x*z1*(2.0*n+1.0)/(n+1.0)-z0*(PetscScalar)(n/(n+1.0));
    501:       z0 = z1;
    502:       z1 = z2;
    503:     }
    504:     glldata->rhoGL[i]=2.0/(p*(p+1.0)*z2*z2);
    505:   }

    507:   /* Auxiliary mat for laplacian */
    508:   PetscMalloc1(p+1,&glldata->A);
    509:   PetscMalloc1((p+1)*(p+1),&glldata->A[0]);
    510:   for (i=1; i<p+1; i++) glldata->A[i]=glldata->A[i-1]+p+1;

    512:   for (j=1; j<p; j++) {
    513:     x =glldata->zGL[j];
    514:     z0=1.0;
    515:     z1=x;
    516:     for (n=1; n<p; n++) {
    517:       z2=x*z1*(2.0*n+1.0)/(n+1.0)-z0*(PetscScalar)(n/(n+1.0));
    518:       z0=z1;
    519:       z1=z2;
    520:     }
    521:     Lpj=z2;
    522:     for (r=1; r<p; r++) {
    523:       if (r == j) {
    524:         glldata->A[j][j]=2.0/(3.0*(1.0-glldata->zGL[j]*glldata->zGL[j])*Lpj*Lpj);
    525:       } else {
    526:         x  = glldata->zGL[r];
    527:         z0 = 1.0;
    528:         z1 = x;
    529:         for (n=1; n<p; n++) {
    530:           z2=x*z1*(2.0*n+1.0)/(n+1.0)-z0*(PetscScalar)(n/(n+1.0));
    531:           z0=z1;
    532:           z1=z2;
    533:         }
    534:         Lpr             = z2;
    535:         glldata->A[r][j]=4.0/(p*(p+1.0)*Lpj*Lpr*(glldata->zGL[j]-glldata->zGL[r])*(glldata->zGL[j]-glldata->zGL[r]));
    536:       }
    537:     }
    538:   }
    539:   for (j=1; j<p+1; j++) {
    540:     x  = glldata->zGL[j];
    541:     z0 = 1.0;
    542:     z1 = x;
    543:     for (n=1; n<p; n++) {
    544:       z2=x*z1*(2.0*n+1.0)/(n+1.0)-z0*(PetscScalar)(n/(n+1.0));
    545:       z0=z1;
    546:       z1=z2;
    547:     }
    548:     Lpj             = z2;
    549:     glldata->A[j][0]=4.0*PetscPowRealInt(-1.0,p)/(p*(p+1.0)*Lpj*(1.0+glldata->zGL[j])*(1.0+glldata->zGL[j]));
    550:     glldata->A[0][j]=glldata->A[j][0];
    551:   }
    552:   for (j=0; j<p; j++) {
    553:     x  = glldata->zGL[j];
    554:     z0 = 1.0;
    555:     z1 = x;
    556:     for (n=1; n<p; n++) {
    557:       z2=x*z1*(2.0*n+1.0)/(n+1.0)-z0*(PetscScalar)(n/(n+1.0));
    558:       z0=z1;
    559:       z1=z2;
    560:     }
    561:     Lpj=z2;

    563:     glldata->A[p][j]=4.0/(p*(p+1.0)*Lpj*(1.0-glldata->zGL[j])*(1.0-glldata->zGL[j]));
    564:     glldata->A[j][p]=glldata->A[p][j];
    565:   }
    566:   glldata->A[0][0]=0.5+(p*(p+1.0)-2.0)/6.0;
    567:   glldata->A[p][p]=glldata->A[0][0];

    569:   /* compute element matrix */
    570:   xloc = p+1;
    571:   yloc = p+1;
    572:   zloc = p+1;
    573:   if (dd.dim<2) yloc=1;
    574:   if (dd.dim<3) zloc=1;
    575:   xyloc  = xloc*yloc;
    576:   xyzloc = xloc*yloc*zloc;

    578:   MatCreate(PETSC_COMM_SELF,&glldata->elem_mat);
    579:   MatSetSizes(glldata->elem_mat,xyzloc,xyzloc,xyzloc,xyzloc);
    580:   MatSetType(glldata->elem_mat,MATSEQAIJ);
    581:   MatSeqAIJSetPreallocation(glldata->elem_mat,xyzloc,NULL); /* overestimated */
    582:   MatZeroEntries(glldata->elem_mat);
    583:   MatSetOption(glldata->elem_mat,MAT_IGNORE_ZERO_ENTRIES,PETSC_TRUE);

    585:   for (k=0; k<zloc; k++) {
    586:     if (dd.dim>2) rhoGLk=glldata->rhoGL[k];
    587:     else rhoGLk=1.0;

    589:     for (j=0; j<yloc; j++) {
    590:       if (dd.dim>1) rhoGLj=glldata->rhoGL[j];
    591:       else rhoGLj=1.0;

    593:       for (i=0; i<xloc; i++) {
    594:         ii = k*xyloc+j*xloc+i;
    595:         s  = k;
    596:         r  = j;
    597:         for (q=0; q<xloc; q++) {
    598:           jj   = s*xyloc+r*xloc+q;
    599:           MatSetValue(glldata->elem_mat,jj,ii,glldata->A[i][q]*rhoGLj*rhoGLk,ADD_VALUES);
    600:         }
    601:         if (dd.dim>1) {
    602:           s=k;
    603:           q=i;
    604:           for (r=0; r<yloc; r++) {
    605:             jj   = s*xyloc+r*xloc+q;
    606:             MatSetValue(glldata->elem_mat,jj,ii,glldata->A[j][r]*glldata->rhoGL[i]*rhoGLk,ADD_VALUES);
    607:           }
    608:         }
    609:         if (dd.dim>2) {
    610:           r=j;
    611:           q=i;
    612:           for (s=0; s<zloc; s++) {
    613:             jj   = s*xyloc+r*xloc+q;
    614:             MatSetValue(glldata->elem_mat,jj,ii,glldata->A[k][s]*rhoGLj*glldata->rhoGL[i],ADD_VALUES);
    615:           }
    616:         }
    617:       }
    618:     }
    619:   }
    620:   MatAssemblyBegin(glldata->elem_mat,MAT_FINAL_ASSEMBLY);
    621:   MatAssemblyEnd  (glldata->elem_mat,MAT_FINAL_ASSEMBLY);
    622: #if DEBUG
    623:   {
    624:     Vec       lvec,rvec;
    625:     PetscReal norm;
    626:     MatCreateVecs(glldata->elem_mat,&lvec,&rvec);
    627:     VecSet(lvec,1.0);
    628:     MatMult(glldata->elem_mat,lvec,rvec);
    629:     VecNorm(rvec,NORM_INFINITY,&norm);
    630:     VecDestroy(&lvec);
    631:     VecDestroy(&rvec);
    632:   }
    633: #endif
    634:   return 0;
    635: }

    637: static PetscErrorCode DomainDecomposition(DomainData *dd)
    638: {
    639:   PetscMPIInt rank;
    640:   PetscInt    i,j,k;

    643:   /* Subdomain index in cartesian coordinates */
    644:   MPI_Comm_rank(dd->gcomm,&rank);
    645:   dd->ipx = rank%dd->npx;
    646:   if (dd->dim>1) dd->ipz = rank/(dd->npx*dd->npy);
    647:   else dd->ipz = 0;

    649:   dd->ipy = rank/dd->npx-dd->ipz*dd->npy;
    650:   /* number of local elements */
    651:   dd->nex_l = dd->nex/dd->npx;
    652:   if (dd->ipx < dd->nex%dd->npx) dd->nex_l++;
    653:   if (dd->dim>1) {
    654:     dd->ney_l = dd->ney/dd->npy;
    655:     if (dd->ipy < dd->ney%dd->npy) dd->ney_l++;
    656:   } else {
    657:     dd->ney_l = 0;
    658:   }
    659:   if (dd->dim>2) {
    660:     dd->nez_l = dd->nez/dd->npz;
    661:     if (dd->ipz < dd->nez%dd->npz) dd->nez_l++;
    662:   } else {
    663:     dd->nez_l = 0;
    664:   }
    665:   /* local and global number of dofs */
    666:   dd->xm_l = dd->nex_l*dd->p+1;
    667:   dd->xm   = dd->nex*dd->p+1;
    668:   dd->ym_l = dd->ney_l*dd->p+1;
    669:   dd->ym   = dd->ney*dd->p+1;
    670:   dd->zm_l = dd->nez_l*dd->p+1;
    671:   dd->zm   = dd->nez*dd->p+1;
    672:   if (!dd->pure_neumann) {
    673:     if (!dd->DBC_zerorows && !dd->ipx) dd->xm_l--;
    674:     if (!dd->DBC_zerorows) dd->xm--;
    675:   }

    677:   /* starting global index for local dofs (simple lexicographic order) */
    678:   dd->startx = 0;
    679:   j          = dd->nex/dd->npx;
    680:   for (i=0; i<dd->ipx; i++) {
    681:     k = j;
    682:     if (i<dd->nex%dd->npx) k++;
    683:     dd->startx = dd->startx+k*dd->p;
    684:   }
    685:   if (!dd->pure_neumann && !dd->DBC_zerorows && dd->ipx) dd->startx--;

    687:   dd->starty = 0;
    688:   if (dd->dim > 1) {
    689:     j = dd->ney/dd->npy;
    690:     for (i=0; i<dd->ipy; i++) {
    691:       k = j;
    692:       if (i<dd->ney%dd->npy) k++;
    693:       dd->starty = dd->starty+k*dd->p;
    694:     }
    695:   }
    696:   dd->startz = 0;
    697:   if (dd->dim > 2) {
    698:     j = dd->nez/dd->npz;
    699:     for (i=0; i<dd->ipz; i++) {
    700:       k = j;
    701:       if (i<dd->nez%dd->npz) k++;
    702:       dd->startz = dd->startz+k*dd->p;
    703:     }
    704:   }
    705:   return 0;
    706: }
    707: static PetscErrorCode ComputeMatrix(DomainData dd, Mat *A)
    708: {
    709:   GLLData                gll;
    710:   Mat                    local_mat  =0,temp_A=0;
    711:   ISLocalToGlobalMapping matis_map  =0;
    712:   IS                     dirichletIS=0;

    715:   /* Compute some stuff of Gauss-Legendre-Lobatto quadrature rule */
    716:   GLLStuffs(dd,&gll);
    717:   /* Compute matrix of subdomain Neumann problem */
    718:   ComputeSubdomainMatrix(dd,gll,&local_mat);
    719:   /* Compute global mapping of local dofs */
    720:   ComputeMapping(dd,&matis_map);
    721:   /* Create MATIS object needed by BDDC */
    722:   MatCreateIS(dd.gcomm,1,PETSC_DECIDE,PETSC_DECIDE,dd.xm*dd.ym*dd.zm,dd.xm*dd.ym*dd.zm,matis_map,matis_map,&temp_A);
    723:   /* Set local subdomain matrices into MATIS object */
    724:   MatScale(local_mat,dd.scalingfactor);
    725:   MatISSetLocalMat(temp_A,local_mat);
    726:   /* Call assembly functions */
    727:   MatAssemblyBegin(temp_A,MAT_FINAL_ASSEMBLY);
    728:   MatAssemblyEnd(temp_A,MAT_FINAL_ASSEMBLY);

    730:   if (dd.DBC_zerorows) {
    731:     PetscInt dirsize;

    733:     ComputeSpecialBoundaryIndices(dd,&dirichletIS,NULL);
    734:     MatSetOption(local_mat,MAT_KEEP_NONZERO_PATTERN,PETSC_TRUE);
    735:     MatZeroRowsColumnsLocalIS(temp_A,dirichletIS,1.0,NULL,NULL);
    736:     ISGetLocalSize(dirichletIS,&dirsize);
    737:     ISDestroy(&dirichletIS);
    738:   }

    740:   /* giving hints to local and global matrices could be useful for the BDDC */
    741:   MatSetOption(local_mat,MAT_SYMMETRIC,PETSC_TRUE);
    742:   MatSetOption(local_mat,MAT_SPD,PETSC_TRUE);
    743: #if DEBUG
    744:   {
    745:     Vec       lvec,rvec;
    746:     PetscReal norm;
    747:     MatCreateVecs(temp_A,&lvec,&rvec);
    748:     VecSet(lvec,1.0);
    749:     MatMult(temp_A,lvec,rvec);
    750:     VecNorm(rvec,NORM_INFINITY,&norm);
    751:     VecDestroy(&lvec);
    752:     VecDestroy(&rvec);
    753:   }
    754: #endif
    755:   /* free allocated workspace */
    756:   PetscFree(gll.zGL);
    757:   PetscFree(gll.rhoGL);
    758:   PetscFree(gll.A[0]);
    759:   PetscFree(gll.A);
    760:   MatDestroy(&gll.elem_mat);
    761:   MatDestroy(&local_mat);
    762:   ISLocalToGlobalMappingDestroy(&matis_map);
    763:   /* give back the pointer to te MATIS object */
    764:   *A = temp_A;
    765:   return 0;
    766: }

    768: static PetscErrorCode ComputeKSPFETIDP(DomainData dd, KSP ksp_bddc, KSP *ksp_fetidp)
    769: {
    770:   KSP            temp_ksp;
    771:   PC             pc;

    774:   KSPGetPC(ksp_bddc,&pc);
    775:   if (!dd.testkspfetidp) {
    776:     PC  D;
    777:     Mat F;

    779:     PCBDDCCreateFETIDPOperators(pc,PETSC_TRUE,NULL,&F,&D);
    780:     KSPCreate(PetscObjectComm((PetscObject)F),&temp_ksp);
    781:     KSPSetOperators(temp_ksp,F,F);
    782:     KSPSetType(temp_ksp,KSPCG);
    783:     KSPSetPC(temp_ksp,D);
    784:     KSPSetComputeSingularValues(temp_ksp,PETSC_TRUE);
    785:     KSPSetOptionsPrefix(temp_ksp,"fluxes_");
    786:     KSPSetFromOptions(temp_ksp);
    787:     KSPSetUp(temp_ksp);
    788:     MatDestroy(&F);
    789:     PCDestroy(&D);
    790:   } else {
    791:     Mat A,Ap;

    793:     KSPCreate(PetscObjectComm((PetscObject)ksp_bddc),&temp_ksp);
    794:     KSPGetOperators(ksp_bddc,&A,&Ap);
    795:     KSPSetOperators(temp_ksp,A,Ap);
    796:     KSPSetOptionsPrefix(temp_ksp,"fluxes_");
    797:     KSPSetType(temp_ksp,KSPFETIDP);
    798:     KSPFETIDPSetInnerBDDC(temp_ksp,pc);
    799:     KSPSetComputeSingularValues(temp_ksp,PETSC_TRUE);
    800:     KSPSetFromOptions(temp_ksp);
    801:     KSPSetUp(temp_ksp);
    802:   }
    803:   *ksp_fetidp = temp_ksp;
    804:   return 0;
    805: }

    807: static PetscErrorCode ComputeKSPBDDC(DomainData dd,Mat A,KSP *ksp)
    808: {
    809:   KSP            temp_ksp;
    810:   PC             pc;
    811:   IS             primals,dirichletIS=0,neumannIS=0,*bddc_dofs_splitting;
    812:   PetscInt       vidx[8],localsize,*xadj=NULL,*adjncy=NULL;
    813:   MatNullSpace   near_null_space;

    816:   KSPCreate(dd.gcomm,&temp_ksp);
    817:   KSPSetOperators(temp_ksp,A,A);
    818:   KSPSetType(temp_ksp,KSPCG);
    819:   KSPGetPC(temp_ksp,&pc);
    820:   PCSetType(pc,PCBDDC);

    822:   localsize = dd.xm_l*dd.ym_l*dd.zm_l;

    824:   /* BDDC customization */

    826:   /* jumping coefficients case */
    827:   PCISSetSubdomainScalingFactor(pc,dd.scalingfactor);

    829:   /* Dofs splitting
    830:      Simple stride-1 IS
    831:      It is not needed since, by default, PCBDDC assumes a stride-1 split */
    832:   PetscMalloc1(1,&bddc_dofs_splitting);
    833: #if 1
    834:   ISCreateStride(PETSC_COMM_WORLD,localsize,0,1,&bddc_dofs_splitting[0]);
    835:   PCBDDCSetDofsSplittingLocal(pc,1,bddc_dofs_splitting);
    836: #else
    837:   /* examples for global ordering */

    839:   /* each process lists the nodes it owns */
    840:   PetscInt sr,er;
    841:   MatGetOwnershipRange(A,&sr,&er);
    842:   ISCreateStride(PETSC_COMM_WORLD,er-sr,sr,1,&bddc_dofs_splitting[0]);
    843:   PCBDDCSetDofsSplitting(pc,1,bddc_dofs_splitting);
    844:   /* Split can be passed in a more general way since any process can list any node */
    845: #endif
    846:   ISDestroy(&bddc_dofs_splitting[0]);
    847:   PetscFree(bddc_dofs_splitting);

    849:   /* Primal constraints implemented by using a near null space attached to A -> now it passes in only the constants
    850:     (which in practice is not needed since by default PCBDDC builds the primal space using constants for quadrature formulas */
    851: #if 0
    852:   Vec vecs[2];
    853:   PetscRandom rctx;
    854:   MatCreateVecs(A,&vecs[0],&vecs[1]);
    855:   PetscRandomCreate(dd.gcomm,&rctx);
    856:   VecSetRandom(vecs[0],rctx);
    857:   VecSetRandom(vecs[1],rctx);
    858:   MatNullSpaceCreate(dd.gcomm,PETSC_TRUE,2,vecs,&near_null_space);
    859:   VecDestroy(&vecs[0]);
    860:   VecDestroy(&vecs[1]);
    861:   PetscRandomDestroy(&rctx);
    862: #else
    863:   MatNullSpaceCreate(dd.gcomm,PETSC_TRUE,0,NULL,&near_null_space);
    864: #endif
    865:   MatSetNearNullSpace(A,near_null_space);
    866:   MatNullSpaceDestroy(&near_null_space);

    868:   /* CSR graph of subdomain dofs */
    869:   BuildCSRGraph(dd,&xadj,&adjncy);
    870:   PCBDDCSetLocalAdjacencyGraph(pc,localsize,xadj,adjncy,PETSC_OWN_POINTER);

    872:   /* Prescribe user-defined primal vertices: in this case we use the 8 corners in 3D (for 2D and 1D, the indices are duplicated) */
    873:   vidx[0] = 0*dd.xm_l+0;
    874:   vidx[1] = 0*dd.xm_l+dd.xm_l-1;
    875:   vidx[2] = (dd.ym_l-1)*dd.xm_l+0;
    876:   vidx[3] = (dd.ym_l-1)*dd.xm_l+dd.xm_l-1;
    877:   vidx[4] = (dd.zm_l-1)*dd.xm_l*dd.ym_l+0*dd.xm_l+0;
    878:   vidx[5] = (dd.zm_l-1)*dd.xm_l*dd.ym_l+0*dd.xm_l+dd.xm_l-1;
    879:   vidx[6] = (dd.zm_l-1)*dd.xm_l*dd.ym_l+(dd.ym_l-1)*dd.xm_l+0;
    880:   vidx[7] = (dd.zm_l-1)*dd.xm_l*dd.ym_l+(dd.ym_l-1)*dd.xm_l+dd.xm_l-1;
    881:   ISCreateGeneral(dd.gcomm,8,vidx,PETSC_COPY_VALUES,&primals);
    882:   PCBDDCSetPrimalVerticesLocalIS(pc,primals);
    883:   ISDestroy(&primals);

    885:   /* Neumann/Dirichlet indices on the global boundary */
    886:   if (dd.DBC_zerorows) {
    887:     /* Only in case you eliminate some rows matrix with zerorows function, you need to set dirichlet indices into PCBDDC data */
    888:     ComputeSpecialBoundaryIndices(dd,&dirichletIS,&neumannIS);
    889:     PCBDDCSetNeumannBoundariesLocal(pc,neumannIS);
    890:     PCBDDCSetDirichletBoundariesLocal(pc,dirichletIS);
    891:   } else {
    892:     if (dd.pure_neumann) {
    893:       /* In such a case, all interface nodes lying on the global boundary are neumann nodes */
    894:       ComputeSpecialBoundaryIndices(dd,NULL,&neumannIS);
    895:       PCBDDCSetNeumannBoundariesLocal(pc,neumannIS);
    896:     } else {
    897:       /* It is wrong setting dirichlet indices without having zeroed the corresponding rows in the global matrix */
    898:       /* But we can still compute them since nodes near the dirichlet boundaries does not need to be defined as neumann nodes */
    899:       ComputeSpecialBoundaryIndices(dd,&dirichletIS,&neumannIS);
    900:       PCBDDCSetNeumannBoundariesLocal(pc,neumannIS);
    901:     }
    902:   }

    904:   /* Pass local null space information to local matrices (needed when using approximate local solvers) */
    905:   if (dd.ipx || dd.pure_neumann) {
    906:     MatNullSpace nsp;
    907:     Mat          local_mat;

    909:     MatISGetLocalMat(A,&local_mat);
    910:     MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,NULL,&nsp);
    911:     MatSetNullSpace(local_mat,nsp);
    912:     MatNullSpaceDestroy(&nsp);
    913:   }
    914:   KSPSetComputeSingularValues(temp_ksp,PETSC_TRUE);
    915:   KSPSetOptionsPrefix(temp_ksp,"physical_");
    916:   KSPSetFromOptions(temp_ksp);
    917:   KSPSetUp(temp_ksp);
    918:   *ksp = temp_ksp;
    919:   ISDestroy(&dirichletIS);
    920:   ISDestroy(&neumannIS);
    921:   return 0;
    922: }

    924: static PetscErrorCode InitializeDomainData(DomainData *dd)
    925: {
    926:   PetscMPIInt    sizes,rank;
    927:   PetscInt       factor;

    930:   dd->gcomm = PETSC_COMM_WORLD;
    931:   MPI_Comm_size(dd->gcomm,&sizes);
    932:   MPI_Comm_rank(dd->gcomm,&rank);
    933:   /* Get information from command line */
    934:   /* Processors/subdomains per dimension */
    935:   /* Default is 1d problem */
    936:   dd->npx = sizes;
    937:   dd->npy = 0;
    938:   dd->npz = 0;
    939:   dd->dim = 1;
    940:   PetscOptionsGetInt(NULL,NULL,"-npx",&dd->npx,NULL);
    941:   PetscOptionsGetInt(NULL,NULL,"-npy",&dd->npy,NULL);
    942:   PetscOptionsGetInt(NULL,NULL,"-npz",&dd->npz,NULL);
    943:   if (dd->npy) dd->dim++;
    944:   if (dd->npz) dd->dim++;
    945:   /* Number of elements per dimension */
    946:   /* Default is one element per subdomain */
    947:   dd->nex = dd->npx;
    948:   dd->ney = dd->npy;
    949:   dd->nez = dd->npz;
    950:   PetscOptionsGetInt(NULL,NULL,"-nex",&dd->nex,NULL);
    951:   PetscOptionsGetInt(NULL,NULL,"-ney",&dd->ney,NULL);
    952:   PetscOptionsGetInt(NULL,NULL,"-nez",&dd->nez,NULL);
    953:   if (!dd->npy) {
    954:     dd->ney=0;
    955:     dd->nez=0;
    956:   }
    957:   if (!dd->npz) dd->nez=0;
    958:   /* Spectral degree */
    959:   dd->p = 3;
    960:   PetscOptionsGetInt(NULL,NULL,"-p",&dd->p,NULL);
    961:   /* pure neumann problem? */
    962:   dd->pure_neumann = PETSC_FALSE;
    963:   PetscOptionsGetBool(NULL,NULL,"-pureneumann",&dd->pure_neumann,NULL);

    965:   /* How to enforce dirichlet boundary conditions (in case pureneumann has not been requested explicitly) */
    966:   dd->DBC_zerorows = PETSC_FALSE;

    968:   PetscOptionsGetBool(NULL,NULL,"-usezerorows",&dd->DBC_zerorows,NULL);
    969:   if (dd->pure_neumann) dd->DBC_zerorows = PETSC_FALSE;
    970:   dd->scalingfactor = 1.0;

    972:   factor = 0.0;
    973:   PetscOptionsGetInt(NULL,NULL,"-jump",&factor,NULL);
    974:   /* checkerboard pattern */
    975:   dd->scalingfactor = PetscPowScalar(10.0,(PetscScalar)factor*PetscPowScalar(-1.0,(PetscScalar)rank));
    976:   /* test data passed in */
    977:   if (dd->dim==1) {
    980:   } else if (dd->dim==2) {
    983:   } else {
    986:   }
    987:   return 0;
    988: }

    990: int main(int argc,char **args)
    991: {
    992:   DomainData         dd;
    993:   PetscReal          norm,maxeig,mineig;
    994:   PetscScalar        scalar_value;
    995:   PetscInt           ndofs,its;
    996:   Mat                A = NULL,F = NULL;
    997:   KSP                KSPwithBDDC = NULL,KSPwithFETIDP = NULL;
    998:   KSPConvergedReason reason;
    999:   Vec                exact_solution = NULL,bddc_solution = NULL,bddc_rhs = NULL;
    1000:   PetscBool          testfetidp = PETSC_TRUE;

    1002:   /* Init PETSc */
    1003:   PetscInitialize(&argc,&args,(char*)0,help);
    1004:   /* Initialize DomainData */
    1005:   InitializeDomainData(&dd);
    1006:   /* Decompose domain */
    1007:   DomainDecomposition(&dd);
    1008: #if DEBUG
    1009:   printf("Subdomain data\n");
    1010:   printf("IPS   : %d %d %d\n",dd.ipx,dd.ipy,dd.ipz);
    1011:   printf("NEG   : %d %d %d\n",dd.nex,dd.ney,dd.nez);
    1012:   printf("NEL   : %d %d %d\n",dd.nex_l,dd.ney_l,dd.nez_l);
    1013:   printf("LDO   : %d %d %d\n",dd.xm_l,dd.ym_l,dd.zm_l);
    1014:   printf("SIZES : %d %d %d\n",dd.xm,dd.ym,dd.zm);
    1015:   printf("STARTS: %d %d %d\n",dd.startx,dd.starty,dd.startz);
    1016: #endif
    1017:   dd.testkspfetidp = PETSC_TRUE;
    1018:   PetscOptionsGetBool(NULL,NULL,"-testfetidp",&testfetidp,NULL);
    1019:   PetscOptionsGetBool(NULL,NULL,"-testkspfetidp",&dd.testkspfetidp,NULL);
    1020:   /* assemble global matrix */
    1021:   ComputeMatrix(dd,&A);
    1022:   /* get work vectors */
    1023:   MatCreateVecs(A,&bddc_solution,NULL);
    1024:   VecDuplicate(bddc_solution,&bddc_rhs);
    1025:   VecDuplicate(bddc_solution,&exact_solution);
    1026:   /* create and customize KSP/PC for BDDC */
    1027:   ComputeKSPBDDC(dd,A,&KSPwithBDDC);
    1028:   /* create KSP/PC for FETIDP */
    1029:   if (testfetidp) {
    1030:     ComputeKSPFETIDP(dd,KSPwithBDDC,&KSPwithFETIDP);
    1031:   }
    1032:   /* create random exact solution */
    1033: #if defined(PETSC_USE_COMPLEX)
    1034:   VecSet(exact_solution,1.0 + PETSC_i);
    1035: #else
    1036:   VecSetRandom(exact_solution,NULL);
    1037: #endif
    1038:   VecShift(exact_solution,-0.5);
    1039:   VecScale(exact_solution,100.0);
    1040:   VecGetSize(exact_solution,&ndofs);
    1041:   if (dd.pure_neumann) {
    1042:     VecSum(exact_solution,&scalar_value);
    1043:     scalar_value = -scalar_value/(PetscScalar)ndofs;
    1044:     VecShift(exact_solution,scalar_value);
    1045:   }
    1046:   /* assemble BDDC rhs */
    1047:   MatMult(A,exact_solution,bddc_rhs);
    1048:   /* test ksp with BDDC */
    1049:   KSPSolve(KSPwithBDDC,bddc_rhs,bddc_solution);
    1050:   KSPGetIterationNumber(KSPwithBDDC,&its);
    1051:   KSPGetConvergedReason(KSPwithBDDC,&reason);
    1052:   KSPComputeExtremeSingularValues(KSPwithBDDC,&maxeig,&mineig);
    1053:   if (dd.pure_neumann) {
    1054:     VecSum(bddc_solution,&scalar_value);
    1055:     scalar_value = -scalar_value/(PetscScalar)ndofs;
    1056:     VecShift(bddc_solution,scalar_value);
    1057:   }
    1058:   /* check exact_solution and BDDC solultion */
    1059:   VecAXPY(bddc_solution,-1.0,exact_solution);
    1060:   VecNorm(bddc_solution,NORM_INFINITY,&norm);
    1061:   PetscPrintf(dd.gcomm,"---------------------BDDC stats-------------------------------\n");
    1062:   PetscPrintf(dd.gcomm,"Number of degrees of freedom               : %8D\n",ndofs);
    1063:   if (reason < 0) {
    1064:     PetscPrintf(dd.gcomm,"Number of iterations                       : %8D\n",its);
    1065:     PetscPrintf(dd.gcomm,"Converged reason                           : %s\n",KSPConvergedReasons[reason]);
    1066:   }
    1067:   if (0.95 <= mineig && mineig <= 1.05) mineig = 1.0;
    1068:   PetscPrintf(dd.gcomm,"Eigenvalues preconditioned operator        : %1.1e %1.1e\n",(double)PetscFloorReal(100.*mineig)/100.,(double)PetscCeilReal(100.*maxeig)/100.);
    1069:   if (norm > 1.e-1 || reason < 0) {
    1070:     PetscPrintf(dd.gcomm,"Error between exact and computed solution : %1.2e\n",(double)norm);
    1071:   }
    1072:   PetscPrintf(dd.gcomm,"--------------------------------------------------------------\n");
    1073:   if (testfetidp) {
    1074:     Vec fetidp_solution_all = NULL,fetidp_solution = NULL,fetidp_rhs = NULL;

    1076:     VecDuplicate(bddc_solution,&fetidp_solution_all);
    1077:     if (!dd.testkspfetidp) {
    1078:       /* assemble fetidp rhs on the space of Lagrange multipliers */
    1079:       KSPGetOperators(KSPwithFETIDP,&F,NULL);
    1080:       MatCreateVecs(F,&fetidp_solution,&fetidp_rhs);
    1081:       PCBDDCMatFETIDPGetRHS(F,bddc_rhs,fetidp_rhs);
    1082:       VecSet(fetidp_solution,0.0);
    1083:       /* test ksp with FETIDP */
    1084:       KSPSolve(KSPwithFETIDP,fetidp_rhs,fetidp_solution);
    1085:       /* assemble fetidp solution on physical domain */
    1086:       PCBDDCMatFETIDPGetSolution(F,fetidp_solution,fetidp_solution_all);
    1087:     } else {
    1088:       KSP kspF;
    1089:       KSPSolve(KSPwithFETIDP,bddc_rhs,fetidp_solution_all);
    1090:       KSPFETIDPGetInnerKSP(KSPwithFETIDP,&kspF);
    1091:       KSPGetOperators(kspF,&F,NULL);
    1092:     }
    1093:     MatGetSize(F,&ndofs,NULL);
    1094:     KSPGetIterationNumber(KSPwithFETIDP,&its);
    1095:     KSPGetConvergedReason(KSPwithFETIDP,&reason);
    1096:     KSPComputeExtremeSingularValues(KSPwithFETIDP,&maxeig,&mineig);
    1097:     /* check FETIDP sol */
    1098:     if (dd.pure_neumann) {
    1099:       VecSum(fetidp_solution_all,&scalar_value);
    1100:       scalar_value = -scalar_value/(PetscScalar)ndofs;
    1101:       VecShift(fetidp_solution_all,scalar_value);
    1102:     }
    1103:     VecAXPY(fetidp_solution_all,-1.0,exact_solution);
    1104:     VecNorm(fetidp_solution_all,NORM_INFINITY,&norm);
    1105:     PetscPrintf(dd.gcomm,"------------------FETI-DP stats-------------------------------\n");
    1106:     PetscPrintf(dd.gcomm,"Number of degrees of freedom               : %8D\n",ndofs);
    1107:     if (reason < 0) {
    1108:       PetscPrintf(dd.gcomm,"Number of iterations                       : %8D\n",its);
    1109:       PetscPrintf(dd.gcomm,"Converged reason                           : %D\n",reason);
    1110:     }
    1111:     if (0.95 <= mineig && mineig <= 1.05) mineig = 1.0;
    1112:     PetscPrintf(dd.gcomm,"Eigenvalues preconditioned operator        : %1.1e %1.1e\n",(double)PetscFloorReal(100.*mineig)/100.,(double)PetscCeilReal(100.*maxeig)/100.);
    1113:     if (norm > 1.e-1 || reason < 0) {
    1114:       PetscPrintf(dd.gcomm,"Error between exact and computed solution : %1.2e\n",(double)norm);
    1115:     }
    1116:     PetscPrintf(dd.gcomm,"--------------------------------------------------------------\n");
    1117:     VecDestroy(&fetidp_solution);
    1118:     VecDestroy(&fetidp_solution_all);
    1119:     VecDestroy(&fetidp_rhs);
    1120:   }
    1121:   KSPDestroy(&KSPwithFETIDP);
    1122:   VecDestroy(&exact_solution);
    1123:   VecDestroy(&bddc_solution);
    1124:   VecDestroy(&bddc_rhs);
    1125:   MatDestroy(&A);
    1126:   KSPDestroy(&KSPwithBDDC);
    1127:   /* Quit PETSc */
    1128:   PetscFinalize();
    1129:   return 0;
    1130: }

    1132: /*TEST

    1134:  testset:
    1135:    nsize: 4
    1136:    args: -nex 7 -physical_pc_bddc_coarse_eqs_per_proc 3 -physical_pc_bddc_switch_static
    1137:    output_file: output/ex59_bddc_fetidp_1.out
    1138:    test:
    1139:      suffix: bddc_fetidp_1
    1140:    test:
    1141:      requires: viennacl
    1142:      suffix: bddc_fetidp_1_viennacl
    1143:      args: -subdomain_mat_type aijviennacl
    1144:    test:
    1145:      requires: cuda
    1146:      suffix: bddc_fetidp_1_cuda
    1147:      args: -subdomain_mat_type aijcusparse -physical_pc_bddc_dirichlet_pc_factor_mat_solver_type cusparse

    1149:  testset:
    1150:    nsize: 4
    1151:    args: -npx 2 -npy 2 -nex 6 -ney 6 -fluxes_ksp_max_it 10 -physical_ksp_max_it 10
    1152:    requires: !single
    1153:    test:
    1154:      suffix: bddc_fetidp_2
    1155:    test:
    1156:      suffix: bddc_fetidp_3
    1157:      args: -npz 1 -nez 1
    1158:    test:
    1159:      suffix: bddc_fetidp_4
    1160:      args: -npz 1 -nez 1 -physical_pc_bddc_use_change_of_basis -physical_sub_schurs_mat_solver_type petsc -physical_pc_bddc_use_deluxe_scaling -physical_pc_bddc_deluxe_singlemat -fluxes_fetidp_ksp_type cg

    1162:  testset:
    1163:    nsize: 8
    1164:    suffix: bddc_fetidp_approximate
    1165:    args: -npx 2 -npy 2 -npz 2 -p 2 -nex 8 -ney 7 -nez 9 -physical_ksp_max_it 20 -subdomain_mat_type aij -physical_pc_bddc_switch_static -physical_pc_bddc_dirichlet_approximate -physical_pc_bddc_neumann_approximate -physical_pc_bddc_dirichlet_pc_type gamg -physical_pc_bddc_dirichlet_pc_gamg_esteig_ksp_type cg -physical_pc_bddc_dirichlet_pc_gamg_esteig_ksp_max_it 10 -physical_pc_bddc_dirichlet_mg_levels_ksp_max_it 3 -physical_pc_bddc_neumann_pc_type sor -physical_pc_bddc_neumann_approximate_scale -testfetidp 0

    1167:  testset:
    1168:    nsize: 4
    1169:    args: -npx 2 -npy 2 -nex 6 -ney 6 -fluxes_ksp_max_it 10 -physical_ksp_max_it 10 -physical_ksp_view -physical_pc_bddc_levels 1
    1170:    filter: grep -v "variant HERMITIAN"
    1171:    requires: !single
    1172:    test:
    1173:      suffix: bddc_fetidp_ml_1
    1174:      args: -physical_pc_bddc_coarsening_ratio 1
    1175:    test:
    1176:      suffix: bddc_fetidp_ml_2
    1177:      args: -physical_pc_bddc_coarsening_ratio 2 -mat_partitioning_type average
    1178:    test:
    1179:      suffix: bddc_fetidp_ml_3
    1180:      args: -physical_pc_bddc_coarsening_ratio 4

    1182:  testset:
    1183:    nsize: 9
    1184:    args: -npx 3 -npy 3 -p 2 -nex 6 -ney 6 -physical_pc_bddc_deluxe_singlemat -physical_sub_schurs_mat_solver_type petsc -physical_pc_bddc_use_deluxe_scaling -physical_pc_bddc_graph_maxcount 1 -physical_pc_bddc_levels 3 -physical_pc_bddc_coarsening_ratio 2 -physical_pc_bddc_coarse_ksp_type gmres
    1185:    output_file: output/ex59_bddc_fetidp_ml_eqlimit.out
    1186:    test:
    1187:      suffix: bddc_fetidp_ml_eqlimit_1
    1188:      args: -physical_pc_bddc_coarse_eqs_limit 31 -mat_partitioning_type average -physical_pc_bddc_coarse_pc_bddc_graph_maxcount 1
    1189:    test:
    1190:      suffix: bddc_fetidp_ml_eqlimit_2
    1191:      args: -physical_pc_bddc_coarse_eqs_limit 46

    1193: TEST*/