Actual source code: basfactor.c

      2: #include <../src/mat/impls/aij/seq/aij.h>
      3: #include <../src/mat/impls/sbaij/seq/sbaij.h>
      4: #include <../src/mat/impls/aij/seq/bas/spbas.h>

      6: PetscErrorCode MatICCFactorSymbolic_SeqAIJ_Bas(Mat fact,Mat A,IS perm,const MatFactorInfo *info)
      7: {
      8:   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
      9:   Mat_SeqSBAIJ   *b;
     10:   PetscBool      perm_identity,missing;
     11:   PetscInt       reallocs=0,i,*ai=a->i,*aj=a->j,am=A->rmap->n,*ui;
     12:   const PetscInt *rip,*riip;
     13:   PetscInt       j;
     14:   PetscInt       d;
     15:   PetscInt       ncols,*cols,*uj;
     16:   PetscReal      fill=info->fill,levels=info->levels;
     17:   IS             iperm;
     18:   spbas_matrix   Pattern_0, Pattern_P;

     21:   MatMissingDiagonal(A,&missing,&d);
     23:   ISIdentity(perm,&perm_identity);
     24:   ISInvertPermutation(perm,PETSC_DECIDE,&iperm);

     26:   /* ICC(0) without matrix ordering: simply copies fill pattern */
     27:   if (!levels && perm_identity) {
     28:     PetscMalloc1(am+1,&ui);
     29:     ui[0] = 0;

     31:     for (i=0; i<am; i++) {
     32:       ui[i+1] = ui[i] + ai[i+1] - a->diag[i];
     33:     }
     34:     PetscMalloc1(ui[am]+1,&uj);
     35:     cols = uj;
     36:     for (i=0; i<am; i++) {
     37:       aj    = a->j + a->diag[i];
     38:       ncols = ui[i+1] - ui[i];
     39:       for (j=0; j<ncols; j++) *cols++ = *aj++;
     40:     }
     41:   } else { /* case: levels>0 || (levels=0 && !perm_identity) */
     42:     ISGetIndices(iperm,&riip);
     43:     ISGetIndices(perm,&rip);

     45:     /* Create spbas_matrix for pattern */
     46:     spbas_pattern_only(am, am, ai, aj, &Pattern_0);

     48:     /* Apply the permutation */
     49:     spbas_apply_reordering(&Pattern_0, rip, riip);

     51:     /* Raise the power */
     52:     spbas_power(Pattern_0, (int) levels+1, &Pattern_P);
     53:     spbas_delete(Pattern_0);

     55:     /* Keep only upper triangle of pattern */
     56:     spbas_keep_upper(&Pattern_P);

     58:     /* Convert to Sparse Row Storage  */
     59:     spbas_matrix_to_crs(Pattern_P, NULL, &ui, &uj);
     60:     spbas_delete(Pattern_P);
     61:   } /* end of case: levels>0 || (levels=0 && !perm_identity) */

     63:   /* put together the new matrix in MATSEQSBAIJ format */

     65:   b               = (Mat_SeqSBAIJ*)(fact)->data;
     66:   b->singlemalloc = PETSC_FALSE;

     68:   PetscMalloc1(ui[am]+1,&b->a);

     70:   b->j    = uj;
     71:   b->i    = ui;
     72:   b->diag = NULL;
     73:   b->ilen = NULL;
     74:   b->imax = NULL;
     75:   b->row  = perm;
     76:   b->col  = perm;

     78:   PetscObjectReference((PetscObject)perm);
     79:   PetscObjectReference((PetscObject)perm);

     81:   b->icol          = iperm;
     82:   b->pivotinblocks = PETSC_FALSE; /* need to get from MatFactorInfo */
     83:   PetscMalloc1(am+1,&b->solve_work);
     84:   PetscLogObjectMemory((PetscObject)(fact),(ui[am]-am)*(sizeof(PetscInt)+sizeof(MatScalar)));
     85:   b->maxnz         = b->nz = ui[am];
     86:   b->free_a        = PETSC_TRUE;
     87:   b->free_ij       = PETSC_TRUE;

     89:   (fact)->info.factor_mallocs   = reallocs;
     90:   (fact)->info.fill_ratio_given = fill;
     91:   if (ai[am] != 0) {
     92:     (fact)->info.fill_ratio_needed = ((PetscReal)ui[am])/((PetscReal)ai[am]);
     93:   } else {
     94:     (fact)->info.fill_ratio_needed = 0.0;
     95:   }
     96:   /*  (fact)->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqAIJ_inplace; */
     97:   return 0;
     98: }

    100: PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ_Bas(Mat B,Mat A,const MatFactorInfo *info)
    101: {
    102:   Mat            C = B;
    103:   Mat_SeqSBAIJ   *b=(Mat_SeqSBAIJ*)C->data;
    104:   IS             ip=b->row,iip = b->icol;
    105:   const PetscInt *rip,*riip;
    106:   PetscInt       mbs=A->rmap->n,*bi=b->i,*bj=b->j;
    107:   MatScalar      *ba     = b->a;
    108:   PetscReal      shiftnz = info->shiftamount;
    109:   PetscReal      droptol = -1;
    110:   PetscBool      perm_identity;
    111:   spbas_matrix   Pattern, matrix_L,matrix_LT;
    112:   PetscReal      mem_reduction;

    114:   /* Reduce memory requirements:   erase values of B-matrix */
    115:   PetscFree(ba);
    116:   /*   Compress (maximum) sparseness pattern of B-matrix */
    117:   spbas_compress_pattern(bi, bj, mbs, mbs, SPBAS_DIAGONAL_OFFSETS,&Pattern, &mem_reduction);
    118:   PetscFree(bi);
    119:   PetscFree(bj);

    121:   PetscInfo(NULL,"    compression rate for spbas_compress_pattern %g \n",(double)mem_reduction);

    123:   /* Make Cholesky decompositions with larger Manteuffel shifts until no more    negative diagonals are found. */
    124:   ISGetIndices(ip,&rip);
    125:   ISGetIndices(iip,&riip);

    127:   if (info->usedt) droptol = info->dt;

    129:   for (PetscErrorCode NEGATIVE_DIAGONAL; ierr == NEGATIVE_DIAGONAL;) {
    130:     PetscBool success;

    132:     spbas_incomplete_cholesky(A, rip, riip, Pattern, droptol, shiftnz,&matrix_LT,&success);
    133:     if (!success) {
    134:       shiftnz *= 1.5;
    135:       if (shiftnz < 1e-5) shiftnz=1e-5;
    136:       PetscInfo(NULL,"spbas_incomplete_cholesky found a negative diagonal. Trying again with Manteuffel shift=%g\n",(double)shiftnz);
    137:     }
    138:   }
    139:   spbas_delete(Pattern);

    141:   PetscInfo(NULL,"    memory_usage for  spbas_incomplete_cholesky  %g bytes per row\n", (double)(PetscReal) (spbas_memory_requirement(matrix_LT)/ (PetscReal) mbs));

    143:   ISRestoreIndices(ip,&rip);
    144:   ISRestoreIndices(iip,&riip);

    146:   /* Convert spbas_matrix to compressed row storage */
    147:   spbas_transpose(matrix_LT, &matrix_L);
    148:   spbas_delete(matrix_LT);
    149:   spbas_matrix_to_crs(matrix_L, &ba, &bi, &bj);
    150:   b->i =bi; b->j=bj; b->a=ba;
    151:   spbas_delete(matrix_L);

    153:   /* Set the appropriate solution functions */
    154:   ISIdentity(ip,&perm_identity);
    155:   if (perm_identity) {
    156:     (B)->ops->solve          = MatSolve_SeqSBAIJ_1_NaturalOrdering_inplace;
    157:     (B)->ops->solvetranspose = MatSolve_SeqSBAIJ_1_NaturalOrdering_inplace;
    158:     (B)->ops->forwardsolve   = MatForwardSolve_SeqSBAIJ_1_NaturalOrdering_inplace;
    159:     (B)->ops->backwardsolve  = MatBackwardSolve_SeqSBAIJ_1_NaturalOrdering_inplace;
    160:   } else {
    161:     (B)->ops->solve          = MatSolve_SeqSBAIJ_1_inplace;
    162:     (B)->ops->solvetranspose = MatSolve_SeqSBAIJ_1_inplace;
    163:     (B)->ops->forwardsolve   = MatForwardSolve_SeqSBAIJ_1_inplace;
    164:     (B)->ops->backwardsolve  = MatBackwardSolve_SeqSBAIJ_1_inplace;
    165:   }

    167:   C->assembled    = PETSC_TRUE;
    168:   C->preallocated = PETSC_TRUE;

    170:   PetscLogFlops(C->rmap->n);
    171:   return 0;
    172: }

    174: PetscErrorCode MatFactorGetSolverType_seqaij_bas(Mat A,MatSolverType *type)
    175: {
    176:   *type = MATSOLVERBAS;
    177:   return 0;
    178: }

    180: PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_bas(Mat A,MatFactorType ftype,Mat *B)
    181: {
    182:   PetscInt       n = A->rmap->n;

    184:   MatCreate(PetscObjectComm((PetscObject)A),B);
    185:   MatSetSizes(*B,n,n,n,n);
    186:   if (ftype == MAT_FACTOR_ICC) {
    187:     MatSetType(*B,MATSEQSBAIJ);
    188:     MatSeqSBAIJSetPreallocation(*B,1,MAT_SKIP_ALLOCATION,NULL);

    190:     (*B)->ops->iccfactorsymbolic     = MatICCFactorSymbolic_SeqAIJ_Bas;
    191:     (*B)->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqAIJ_Bas;
    192:     PetscObjectComposeFunction((PetscObject)*B,"MatFactorGetSolverType_C",MatFactorGetSolverType_seqaij_bas);
    193:     PetscStrallocpy(MATORDERINGND,(char**)&(*B)->preferredordering[MAT_FACTOR_LU]);
    194:     PetscStrallocpy(MATORDERINGND,(char**)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY]);
    195:   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported");
    196:   (*B)->factortype = ftype;

    198:   PetscFree((*B)->solvertype);
    199:   PetscStrallocpy(MATSOLVERBAS,&(*B)->solvertype);
    200:   (*B)->canuseordering = PETSC_TRUE;
    201:   PetscStrallocpy(MATORDERINGNATURAL,(char**)&(*B)->preferredordering[MAT_FACTOR_ICC]);
    202:   return 0;
    203: }