#include <itkMissingStructurePenalty.h>

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >

Computes the (pseudo) volume of the transformed surface mesh of a structure.
.

Author: F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note: If you use the MissingStructurePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen, A.N.T.J. Kotte, A.A.C. de Leeuw, I.M. J�rgenliemk-Schulz,
M.A. Viergever and J.P.W. Pluim "Registration of structurally dissimilar \n images in MRI-based brachytherapy ", Phys. Med. Biol. 59 (2014) 4033-4045.
http://stacks.iop.org/0031-9155/59/4033

Definition at line 44 of file itkMissingStructurePenalty.h.

Inheritance diagram for itk::MissingVolumeMeshPenalty< TFixedPointSet, TMovingPointSet >:

Public Types
typedef MeshTraitsType::CellType::CellInterface	CellInterfaceType

typedef SmartPointer< const Self >	ConstPointer

typedef OutputPointType::CoordRepType	CoordRepType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef unsigned char	DummyMeshPixelType

typedef FixedMeshType::ConstPointer	FixedMeshConstPointer

typedef FixedMeshContainerType::ConstPointer	FixedMeshContainerConstPointer

typedef FixedMeshContainerType::ElementIdentifier	FixedMeshContainerElementIdentifier

typedef FixedMeshContainerType::Pointer	FixedMeshContainerPointer

typedef VectorContainer< MeshIdType, FixedMeshConstPointer >	FixedMeshContainerType

typedef FixedMeshType::Pointer	FixedMeshPointer

typedef FixedMeshType::PointIdentifier	FixedMeshPointIdentifier

typedef Mesh< DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType >	FixedMeshType

typedef Superclass::InputPointType	InputPointType

typedef MappedMeshContainerType::ConstPointer	MappedMeshContainerConstPointer

typedef MappedMeshContainerType::Pointer	MappedMeshContainerPointer

typedef VectorContainer< MeshIdType, FixedMeshPointer >	MappedMeshContainerType

typedef Superclass::MeasureType	MeasureType

typedef unsigned int	MeshIdType

typedef FixedMeshType::PointDataContainerIterator	MeshPointDataContainerConstIteratorType

typedef FixedMeshType::PointDataContainerConstPointer	MeshPointDataContainerConstPointer

typedef MeshPointDataContainerType::Iterator	MeshPointDataContainerIteratorType

typedef FixedMeshType::PointDataContainerPointer	MeshPointDataContainerPointer

typedef FixedMeshType::PointDataContainer	MeshPointDataContainerType

typedef FixedMeshType::PointsContainerConstIterator	MeshPointsContainerConstIteratorType

typedef MeshPointsContainerType::ConstPointer	MeshPointsContainerConstPointer

typedef FixedMeshType::PointsContainerIterator	MeshPointsContainerIteratorType

typedef MeshPointsContainerType::Pointer	MeshPointsContainerPointer

typedef FixedMeshType::PointsContainer	MeshPointsContainerType

typedef Array< DerivativeValueType >	MeshPointsDerivativeValueType

typedef FixedMeshType::PointType	MeshPointType

typedef DefaultStaticMeshTraits< DummyMeshPixelType, FixedPointSetDimension, FixedPointSetDimension, CoordRepType >	MeshTraitsType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::OutputPointType	OutputPointType

typedef SmartPointer< Self >	Pointer

typedef MissingVolumeMeshPenalty	Self

typedef itk::Vector< typename VectorType::ValueType, FixedPointSetDimension-1 >	SubVectorType

typedef SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

typedef VectorType::const_pointer	VectorConstPointer

typedef FixedMeshType::PointType::VectorType	VectorType

typedef vnl_vector< CoordRepType >	VnlVectorType

Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer

typedef FixedImageMaskType::Pointer	FixedImageMaskPointer

typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) >	FixedImageMaskType

typedef FixedPointSetType::ConstPointer	FixedPointSetConstPointer

typedef FixedPointSetType::PixelType	FixedPointSetPixelType

typedef TFixedPointSet	FixedPointSetType

typedef TransformType::InputPointType	InputPointType

typedef Superclass::MeasureType	MeasureType

typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer

typedef MovingImageMaskType::Pointer	MovingImageMaskPointer

typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) >	MovingImageMaskType

typedef MovingPointSetType::ConstPointer	MovingPointSetConstPointer

typedef MovingPointSetType::PixelType	MovingPointSetPixelType

typedef TMovingPointSet	MovingPointSetType

typedef TransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef TransformType::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef FixedPointSetType::PointDataContainer::ConstIterator	PointDataIterator

typedef SmartPointer< Self >	Pointer

typedef FixedPointSetType::PointsContainer::ConstIterator	PointIterator

typedef SingleValuedPointSetToPointSetMetric	Self

typedef SingleValuedCostFunction	Superclass

typedef TransformType::JacobianType	TransformJacobianType

typedef TransformType::ParametersType	TransformParametersType

typedef TransformType::Pointer	TransformPointer

typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) >	TransformType

Public Member Functions
virtual const char *	GetClassName () const

void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const

virtual const FixedMeshContainerType *	GetFixedMeshContainer ()

virtual MappedMeshContainerType *	GetMappedMeshContainer ()

MeasureType	GetValue (const TransformParametersType &parameters) const

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const

virtual void	Initialize (void) throw ( ExceptionObject )

	itkStaticConstMacro (FixedPointSetDimension, unsigned int, Superclass::FixedPointSetDimension)

	itkStaticConstMacro (MovingPointSetDimension, unsigned int, Superclass::MovingPointSetDimension)

virtual void	SetFixedMeshContainer (const FixedMeshContainerType *_arg)

virtual void	SetMappedMeshContainer (MappedMeshContainerType *_arg)

Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const FixedImageMaskType *	GetFixedImageMask ()

virtual const FixedPointSetType *	GetFixedPointSet ()

virtual const MovingImageMaskType *	GetMovingImageMask ()

virtual const MovingPointSetType *	GetMovingPointSet ()

unsigned int	GetNumberOfParameters (void) const

virtual const TransformType *	GetTransform ()

virtual const bool &	GetUseMetricSingleThreaded ()

	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)

	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual void	SetFixedPointSet (const FixedPointSetType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual void	SetMovingPointSet (const MovingPointSetType *_arg)

virtual void	SetTransform (TransformType *_arg)

void	SetTransformParameters (const ParametersType &parameters) const

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	MissingVolumeMeshPenalty ()

virtual	~MissingVolumeMeshPenalty ()

Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void	PrintSelf (std::ostream &os, Indent indent) const

	SingleValuedPointSetToPointSetMetric ()

virtual	~SingleValuedPointSetToPointSetMetric ()

Private Member Functions
	MissingVolumeMeshPenalty (const Self &)

void	operator= (const Self &)

void	SubVector (const VectorType &fullVector, SubVectorType &subVector, const unsigned int leaveOutIndex) const