org.forester.ws.seqdb
Class EbiDbEntry

java.lang.Object
  org.forester.ws.seqdb.EbiDbEntry

All Implemented Interfaces:

SequenceDatabaseEntry

public final class EbiDbEntry
extends java.lang.Object
implements SequenceDatabaseEntry

Method Summary

java.lang.Object	clone()
static SequenceDatabaseEntry	createInstanceFromPlainText(java.util.List<java.lang.String> lines)
static SequenceDatabaseEntry	createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines)
java.lang.String	getAccession()
java.lang.String	getProvider()
java.lang.String	getSequenceName()
java.lang.String	getSequenceSymbol()
java.lang.String	getTaxonomyIdentifier()
java.lang.String	getTaxonomyScientificName()
boolean	isEmpty()
void	setProvider(java.lang.String provider)

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

clone

public java.lang.Object clone()
                       throws java.lang.CloneNotSupportedException

Overrides:

clone in class java.lang.Object

Throws:

java.lang.CloneNotSupportedException

createInstanceFromPlainTextForRefSeq

public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines)

createInstanceFromPlainText

public static SequenceDatabaseEntry createInstanceFromPlainText(java.util.List<java.lang.String> lines)

getAccession

public java.lang.String getAccession()

Specified by:

getAccession in interface SequenceDatabaseEntry

getSequenceName

public java.lang.String getSequenceName()

Specified by:

getSequenceName in interface SequenceDatabaseEntry

getTaxonomyScientificName

public java.lang.String getTaxonomyScientificName()

Specified by:

getTaxonomyScientificName in interface SequenceDatabaseEntry

getTaxonomyIdentifier

public java.lang.String getTaxonomyIdentifier()

Specified by:

getTaxonomyIdentifier in interface SequenceDatabaseEntry

getSequenceSymbol

public java.lang.String getSequenceSymbol()

Specified by:

getSequenceSymbol in interface SequenceDatabaseEntry

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface SequenceDatabaseEntry

getProvider

public java.lang.String getProvider()

Specified by:

getProvider in interface SequenceDatabaseEntry

setProvider

public void setProvider(java.lang.String provider)