Package org.forester.surfacing

Interface Summary

CombinableDomains
DomainSimilarity
DomainSimilarityCalculator
GenomeWideCombinableDomains
PairwiseDomainSimilarity
PairwiseDomainSimilarityCalculator

Class Summary

AdjactantDirectedBinaryDomainCombination
AdjactantDirectedCombinableDomains
BasicBinaryDomainCombination
BasicCombinableDomains
BasicDomainSimilarityCalculator
BasicGenomeWideCombinableDomains
CombinationsBasedPairwiseDomainSimilarity
CombinationsBasedPairwiseDomainSimilarityCalculator
CountsBasedPairwiseDomainSimilarity
DirectedBinaryDomainCombination
DirectedCombinableDomains
DomainArchitectureBasedGenomeSimilarityCalculator
DomainCountsBasedPairwiseSimilarityCalculator
DomainCountsDifferenceUtil
DomainLengths
DomainLengthsTable
DomainParsimonyCalculator
MappingResults
PairwiseGenomeComparator
PrintableDomainSimilarity
ProteinCountsBasedPairwiseDomainSimilarityCalculator
SimpleDomain
SurfacingConstants
SurfacingUtil
TestSurfacing

Enum Summary

DomainCountsDifferenceUtil.COPY_CALCULATION_MODE
DomainSimilarity.DomainSimilarityScoring
DomainSimilarity.DomainSimilaritySortField
DomainSimilarityCalculator.Detailedness
DomainSimilarityCalculator.GoAnnotationOutput
GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder
PrintableDomainSimilarity.PRINT_OPTION