org.forester.surfacing

Interfaces  CombinableDomains DomainSimilarity DomainSimilarityCalculator GenomeWideCombinableDomains PairwiseDomainSimilarity PairwiseDomainSimilarityCalculator

Classes  AdjactantDirectedBinaryDomainCombination AdjactantDirectedCombinableDomains BasicBinaryDomainCombination BasicCombinableDomains BasicDomainSimilarityCalculator BasicGenomeWideCombinableDomains CombinationsBasedPairwiseDomainSimilarity CombinationsBasedPairwiseDomainSimilarityCalculator CountsBasedPairwiseDomainSimilarity DirectedBinaryDomainCombination DirectedCombinableDomains DomainArchitectureBasedGenomeSimilarityCalculator DomainCountsBasedPairwiseSimilarityCalculator DomainCountsDifferenceUtil DomainLengths DomainLengthsTable DomainParsimonyCalculator MappingResults PairwiseGenomeComparator PrintableDomainSimilarity ProteinCountsBasedPairwiseDomainSimilarityCalculator SimpleDomain SurfacingConstants SurfacingUtil TestSurfacing

Enums  DomainCountsDifferenceUtil.COPY_CALCULATION_MODE DomainSimilarity.DomainSimilarityScoring DomainSimilarity.DomainSimilaritySortField DomainSimilarityCalculator.Detailedness DomainSimilarityCalculator.GoAnnotationOutput GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder PrintableDomainSimilarity.PRINT_OPTION