org.forester.msa
Class ResampleableMsa

java.lang.Object
  org.forester.msa.BasicMsa
      org.forester.msa.ResampleableMsa

All Implemented Interfaces:

Msa

public final class ResampleableMsa
extends BasicMsa

Constructor Summary

ResampleableMsa(BasicMsa msa)

Method Summary

char	getResidueAt(int row, int col)
void	resample(int[] resampled_column_positions)
void	setResidueAt(int row, int col, char residue)

Methods inherited from class org.forester.msa.BasicMsa

createInstance, getColumnAt, getIdentifier, getLength, getNumberOfSequences, getSequenceAsString, getType, setIdentifier, toString, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ResampleableMsa

public ResampleableMsa(BasicMsa msa)

Method Detail

resample

public void resample(int[] resampled_column_positions)

getResidueAt

public char getResidueAt(int row,
                         int col)

Specified by:

getResidueAt in interface Msa

Overrides:

getResidueAt in class BasicMsa

setResidueAt

public void setResidueAt(int row,
                         int col,
                         char residue)

Specified by:

setResidueAt in interface Msa

Overrides:

setResidueAt in class BasicMsa