org.forester.msa
Interface MsaInferrer

All Known Implementing Classes:

Mafft, MafftOLD

public interface MsaInferrer

Method Summary

java.lang.String	getErrorDescription()
int	getExitCode()
Msa	infer(java.io.File path_to_input_seqs, java.util.List<java.lang.String> opts)

Method Detail

getErrorDescription

java.lang.String getErrorDescription()

getExitCode

int getExitCode()

infer

Msa infer(java.io.File path_to_input_seqs,
          java.util.List<java.lang.String> opts)
          throws java.io.IOException,
                 java.lang.InterruptedException

Throws:

java.io.IOException

java.lang.InterruptedException