org.forester.io.parsers.phyloxml
Class PhyloXmlUtil

java.lang.Object
  org.forester.io.parsers.phyloxml.PhyloXmlUtil

public final class PhyloXmlUtil
extends java.lang.Object

Field Summary

static java.util.regex.Pattern	LIT_REF_DOI_PATTERN
static java.lang.String	OTHER
static int	ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
static java.lang.String	SEQ_TYPE_DNA
static java.lang.String	SEQ_TYPE_PROTEIN
static java.lang.String	SEQ_TYPE_RNA
static java.util.regex.Pattern	SEQUENCE_SYMBOL_PATTERN
static java.util.Set<java.lang.String>	SEQUENCE_TYPES
static java.util.regex.Pattern	TAXOMONY_CODE_PATTERN
static java.util.List<java.lang.String>	TAXONOMY_RANKS_LIST
static java.util.Set<java.lang.String>	TAXONOMY_RANKS_SET
static java.lang.String	UNIPROT_TAX_PROVIDER
static java.lang.String	UNKNOWN
static java.lang.String	VECTOR_PROPERTY_REF
static java.lang.String	VECTOR_PROPERTY_TYPE

Constructor Summary

PhyloXmlUtil()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

OTHER

public static final java.lang.String OTHER

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Constant Field Values

UNKNOWN

public static final java.lang.String UNKNOWN

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Constant Field Values

SEQUENCE_SYMBOL_PATTERN

public static final java.util.regex.Pattern SEQUENCE_SYMBOL_PATTERN

TAXOMONY_CODE_PATTERN

public static final java.util.regex.Pattern TAXOMONY_CODE_PATTERN

LIT_REF_DOI_PATTERN

public static final java.util.regex.Pattern LIT_REF_DOI_PATTERN

SEQUENCE_TYPES

public static final java.util.Set<java.lang.String> SEQUENCE_TYPES

TAXONOMY_RANKS_LIST

public static final java.util.List<java.lang.String> TAXONOMY_RANKS_LIST

TAXONOMY_RANKS_SET

public static final java.util.Set<java.lang.String> TAXONOMY_RANKS_SET

ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

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Constant Field Values

VECTOR_PROPERTY_REF

public static final java.lang.String VECTOR_PROPERTY_REF

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Constant Field Values

VECTOR_PROPERTY_TYPE

public static final java.lang.String VECTOR_PROPERTY_TYPE

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Constant Field Values

UNIPROT_TAX_PROVIDER

public static final java.lang.String UNIPROT_TAX_PROVIDER

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Constant Field Values

SEQ_TYPE_RNA

public static final java.lang.String SEQ_TYPE_RNA

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Constant Field Values

SEQ_TYPE_DNA

public static final java.lang.String SEQ_TYPE_DNA

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Constant Field Values

SEQ_TYPE_PROTEIN

public static final java.lang.String SEQ_TYPE_PROTEIN

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Constant Field Values

Constructor Detail

PhyloXmlUtil

public PhyloXmlUtil()