org.forester.io.parsers.phyloxml
Class PhyloXmlParser

java.lang.Object
  org.forester.io.parsers.phyloxml.PhyloXmlParser

All Implemented Interfaces:

PhylogenyParser

public class PhyloXmlParser
extends java.lang.Object
implements PhylogenyParser

Field Summary

static java.lang.String	APACHE_FEATURES_VALIDATION_SCHEMA
static java.lang.String	APACHE_FEATURES_VALIDATION_SCHEMA_FULL
static java.lang.String	APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION
static java.lang.String	JAXP_SCHEMA_LANGUAGE
static java.lang.String	JAXP_SCHEMA_SOURCE
static java.lang.String	SAX_FEATURES_VALIDATION
static java.lang.String	W3C_XML_SCHEMA

Constructor Summary

PhyloXmlParser()

Method Summary

static PhyloXmlParser	createPhyloXmlParserXsdValidating()
int	getErrorCount()
java.lang.StringBuffer	getErrorMessages()
int	getWarningCount()
java.lang.StringBuffer	getWarningMessages()
boolean	isValid()
Phylogeny[]	parse()
void	setSource(java.lang.Object source)
void	setValidateAgainstSchema(java.lang.String schema_location)
void	setZippedInputstream(boolean zipped_inputstream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

JAXP_SCHEMA_LANGUAGE

public static final java.lang.String JAXP_SCHEMA_LANGUAGE

See Also:

Constant Field Values

W3C_XML_SCHEMA

public static final java.lang.String W3C_XML_SCHEMA

See Also:

Constant Field Values

JAXP_SCHEMA_SOURCE

public static final java.lang.String JAXP_SCHEMA_SOURCE

See Also:

Constant Field Values

SAX_FEATURES_VALIDATION

public static final java.lang.String SAX_FEATURES_VALIDATION

See Also:

Constant Field Values

APACHE_FEATURES_VALIDATION_SCHEMA

public static final java.lang.String APACHE_FEATURES_VALIDATION_SCHEMA

See Also:

Constant Field Values

APACHE_FEATURES_VALIDATION_SCHEMA_FULL

public static final java.lang.String APACHE_FEATURES_VALIDATION_SCHEMA_FULL

See Also:

Constant Field Values

APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

public static final java.lang.String APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

See Also:

Constant Field Values

Constructor Detail

PhyloXmlParser

public PhyloXmlParser()

Method Detail

getErrorCount

public int getErrorCount()

getErrorMessages

public java.lang.StringBuffer getErrorMessages()

getWarningCount

public int getWarningCount()

getWarningMessages

public java.lang.StringBuffer getWarningMessages()

isValid

public boolean isValid()

parse

public Phylogeny[] parse()
                  throws java.io.IOException,
                         PhylogenyParserException

Specified by:

parse in interface PhylogenyParser

Throws:

java.io.IOException

PhylogenyParserException

setSource

public void setSource(java.lang.Object source)

Specified by:

setSource in interface PhylogenyParser

setValidateAgainstSchema

public void setValidateAgainstSchema(java.lang.String schema_location)

setZippedInputstream

public void setZippedInputstream(boolean zipped_inputstream)

createPhyloXmlParserXsdValidating

public static PhyloXmlParser createPhyloXmlParserXsdValidating()