Overview  Package   Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES    
SUMMARY: NESTED | FIELD | CONSTR | METHOD DETAIL: FIELD | CONSTR | METHOD

org.forester.io.parsers.phyloxml
Class PhyloXmlMapping

java.lang.Object
  extended by org.forester.io.parsers.phyloxml.PhyloXmlMapping

public final class PhyloXmlMapping
extends java.lang.Object

Field Summary
static java.lang.String ACCESSION
           
static java.lang.String ACCESSION_SOURCE_ATTR
           
static java.lang.String ANNOTATION
           
static java.lang.String ANNOTATION_DESC
           
static java.lang.String ANNOTATION_EVIDENCE_ATTR
           
static java.lang.String ANNOTATION_REF_ATTR
           
static java.lang.String ANNOTATION_SOURCE_ATTR
           
static java.lang.String ANNOTATION_TYPE_ATTR
           
static java.lang.String BINARY_CHARACTER
           
static java.lang.String BINARY_CHARACTERS
           
static java.lang.String BINARY_CHARACTERS_GAINED
           
static java.lang.String BINARY_CHARACTERS_GAINED_COUNT_ATTR
           
static java.lang.String BINARY_CHARACTERS_LOST
           
static java.lang.String BINARY_CHARACTERS_LOST_COUNT_ATTR
           
static java.lang.String BINARY_CHARACTERS_PRESENT
           
static java.lang.String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
           
static java.lang.String BINARY_CHARACTERS_TYPE_ATTR
           
static java.lang.String BRANCH_LENGTH
           
static java.lang.String CLADE
           
static java.lang.String CLADE_DATE
           
static java.lang.String CLADE_DATE_DESC
           
static java.lang.String CLADE_DATE_MAX
           
static java.lang.String CLADE_DATE_MIN
           
static java.lang.String CLADE_DATE_UNIT
           
static java.lang.String CLADE_DATE_VALUE
           
static java.lang.String COLOR
           
static java.lang.String COLOR_BLUE
           
static java.lang.String COLOR_GREEN
           
static java.lang.String COLOR_RED
           
static java.lang.String CONFIDENCE
           
static java.lang.String CONFIDENCE_SD_ATTR
           
static java.lang.String CONFIDENCE_TYPE_ATTR
           
static java.lang.String DISTRIBUTION
           
static java.lang.String DISTRIBUTION_DESC
           
static java.lang.String EVENT_DUPLICATIONS
           
static java.lang.String EVENT_LOSSES
           
static java.lang.String EVENT_SPECIATIONS
           
static java.lang.String EVENT_TYPE
           
static java.lang.String EVENTS
           
static java.lang.String ID_REF
           
static java.lang.String IDENTIFIER
           
static java.lang.String IDENTIFIER_PROVIDER_ATTR
           
static java.lang.String NODE_COLLAPSE
           
static java.lang.String NODE_NAME
           
static java.lang.String PHYLOGENY
           
static java.lang.String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
           
static java.lang.String PHYLOGENY_DESCRIPTION
           
static java.lang.String PHYLOGENY_IS_REROOTABLE_ATTR
           
static java.lang.String PHYLOGENY_IS_ROOTED_ATTR
           
static java.lang.String PHYLOGENY_NAME
           
static java.lang.String PHYLOGENY_TYPE_ATTR
           
static java.lang.String POINT
           
static java.lang.String POINT_ALTITUDE
           
static java.lang.String POINT_ALTITUDE_UNIT_ATTR
           
static java.lang.String POINT_GEODETIC_DATUM
           
static java.lang.String POINT_LATITUDE
           
static java.lang.String POINT_LONGITUDE
           
static java.lang.String POLYGON
           
static java.lang.String PROPERTY
           
static java.lang.String PROPERTY_APPLIES_TO
           
static java.lang.String PROPERTY_DATATYPE
           
static java.lang.String PROPERTY_REF
           
static java.lang.String PROPERTY_UNIT
           
static java.lang.String REFERENCE
           
static java.lang.String REFERENCE_DESC
           
static java.lang.String REFERENCE_DOI_ATTR
           
static java.lang.String SEQUENCE
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
           
static java.lang.String SEQUENCE_DOMAIN_ARCHITECURE
           
static java.lang.String SEQUENCE_LOCATION
           
static java.lang.String SEQUENCE_MOL_SEQ
           
static java.lang.String SEQUENCE_MOL_SEQ_ALIGNED_ATTR
           
static java.lang.String SEQUENCE_NAME
           
static java.lang.String SEQUENCE_RELATION
           
static java.lang.String SEQUENCE_RELATION_DISTANCE
           
static java.lang.String SEQUENCE_RELATION_ID_REF0
           
static java.lang.String SEQUENCE_RELATION_ID_REF1
           
static java.lang.String SEQUENCE_RELATION_TYPE
           
static java.lang.String SEQUENCE_SOURCE_ID
           
static java.lang.String SEQUENCE_SYMBOL
           
static java.lang.String SEQUENCE_TYPE
           
static java.lang.String TAXONOMY
           
static java.lang.String TAXONOMY_AUTHORITY
           
static java.lang.String TAXONOMY_CODE
           
static java.lang.String TAXONOMY_COMMON_NAME
           
static java.lang.String TAXONOMY_RANK
           
static java.lang.String TAXONOMY_SCIENTIFIC_NAME
           
static java.lang.String TAXONOMY_SYNONYM
           
static java.lang.String TYPE_ATTR
           
static java.lang.String URI
           
static java.lang.String URI_DESC_ATTR
           
static java.lang.String WIDTH
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PHYLOGENY

public static final java.lang.String PHYLOGENY
See Also:
Constant Field Values

PHYLOGENY_NAME

public static final java.lang.String PHYLOGENY_NAME
See Also:
Constant Field Values

PHYLOGENY_DESCRIPTION

public static final java.lang.String PHYLOGENY_DESCRIPTION
See Also:
Constant Field Values

PHYLOGENY_IS_REROOTABLE_ATTR

public static final java.lang.String PHYLOGENY_IS_REROOTABLE_ATTR
See Also:
Constant Field Values

PHYLOGENY_BRANCHLENGTH_UNIT_ATTR

public static final java.lang.String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
See Also:
Constant Field Values

PHYLOGENY_IS_ROOTED_ATTR

public static final java.lang.String PHYLOGENY_IS_ROOTED_ATTR
See Also:
Constant Field Values

PHYLOGENY_TYPE_ATTR

public static final java.lang.String PHYLOGENY_TYPE_ATTR
See Also:
Constant Field Values

CLADE

public static final java.lang.String CLADE
See Also:
Constant Field Values

NODE_NAME

public static final java.lang.String NODE_NAME
See Also:
Constant Field Values

NODE_COLLAPSE

public static final java.lang.String NODE_COLLAPSE
See Also:
Constant Field Values

SEQUENCE

public static final java.lang.String SEQUENCE
See Also:
Constant Field Values

SEQUENCE_NAME

public static final java.lang.String SEQUENCE_NAME
See Also:
Constant Field Values

SEQUENCE_SYMBOL

public static final java.lang.String SEQUENCE_SYMBOL
See Also:
Constant Field Values

ACCESSION

public static final java.lang.String ACCESSION
See Also:
Constant Field Values

ACCESSION_SOURCE_ATTR

public static final java.lang.String ACCESSION_SOURCE_ATTR
See Also:
Constant Field Values

SEQUENCE_LOCATION

public static final java.lang.String SEQUENCE_LOCATION
See Also:
Constant Field Values

SEQUENCE_MOL_SEQ

public static final java.lang.String SEQUENCE_MOL_SEQ
See Also:
Constant Field Values

SEQUENCE_MOL_SEQ_ALIGNED_ATTR

public static final java.lang.String SEQUENCE_MOL_SEQ_ALIGNED_ATTR
See Also:
Constant Field Values

ANNOTATION

public static final java.lang.String ANNOTATION
See Also:
Constant Field Values

ANNOTATION_DESC

public static final java.lang.String ANNOTATION_DESC
See Also:
Constant Field Values

ANNOTATION_REF_ATTR

public static final java.lang.String ANNOTATION_REF_ATTR
See Also:
Constant Field Values

ANNOTATION_EVIDENCE_ATTR

public static final java.lang.String ANNOTATION_EVIDENCE_ATTR
See Also:
Constant Field Values

ANNOTATION_TYPE_ATTR

public static final java.lang.String ANNOTATION_TYPE_ATTR
See Also:
Constant Field Values

TAXONOMY

public static final java.lang.String TAXONOMY
See Also:
Constant Field Values

TAXONOMY_SCIENTIFIC_NAME

public static final java.lang.String TAXONOMY_SCIENTIFIC_NAME
See Also:
Constant Field Values

TAXONOMY_COMMON_NAME

public static final java.lang.String TAXONOMY_COMMON_NAME
See Also:
Constant Field Values

TAXONOMY_CODE

public static final java.lang.String TAXONOMY_CODE
See Also:
Constant Field Values

TAXONOMY_RANK

public static final java.lang.String TAXONOMY_RANK
See Also:
Constant Field Values

TAXONOMY_SYNONYM

public static final java.lang.String TAXONOMY_SYNONYM
See Also:
Constant Field Values

TAXONOMY_AUTHORITY

public static final java.lang.String TAXONOMY_AUTHORITY
See Also:
Constant Field Values

DISTRIBUTION

public static final java.lang.String DISTRIBUTION
See Also:
Constant Field Values

BINARY_CHARACTERS

public static final java.lang.String BINARY_CHARACTERS
See Also:
Constant Field Values

BINARY_CHARACTERS_PRESENT

public static final java.lang.String BINARY_CHARACTERS_PRESENT
See Also:
Constant Field Values

BINARY_CHARACTERS_GAINED

public static final java.lang.String BINARY_CHARACTERS_GAINED
See Also:
Constant Field Values

BINARY_CHARACTERS_LOST

public static final java.lang.String BINARY_CHARACTERS_LOST
See Also:
Constant Field Values

BINARY_CHARACTERS_TYPE_ATTR

public static final java.lang.String BINARY_CHARACTERS_TYPE_ATTR
See Also:
Constant Field Values

BINARY_CHARACTERS_PRESENT_COUNT_ATTR

public static final java.lang.String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
See Also:
Constant Field Values

BINARY_CHARACTERS_GAINED_COUNT_ATTR

public static final java.lang.String BINARY_CHARACTERS_GAINED_COUNT_ATTR
See Also:
Constant Field Values

BINARY_CHARACTERS_LOST_COUNT_ATTR

public static final java.lang.String BINARY_CHARACTERS_LOST_COUNT_ATTR
See Also:
Constant Field Values

BRANCH_LENGTH

public static final java.lang.String BRANCH_LENGTH
See Also:
Constant Field Values

CONFIDENCE

public static final java.lang.String CONFIDENCE
See Also:
Constant Field Values

CONFIDENCE_SD_ATTR

public static final java.lang.String CONFIDENCE_SD_ATTR
See Also:
Constant Field Values

CONFIDENCE_TYPE_ATTR

public static final java.lang.String CONFIDENCE_TYPE_ATTR
See Also:
Constant Field Values

COLOR

public static final java.lang.String COLOR
See Also:
Constant Field Values

COLOR_RED

public static final java.lang.String COLOR_RED
See Also:
Constant Field Values

COLOR_GREEN

public static final java.lang.String COLOR_GREEN
See Also:
Constant Field Values

COLOR_BLUE

public static final java.lang.String COLOR_BLUE
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
See Also:
Constant Field Values

IDENTIFIER

public static final java.lang.String IDENTIFIER
See Also:
Constant Field Values

IDENTIFIER_PROVIDER_ATTR

public static final java.lang.String IDENTIFIER_PROVIDER_ATTR
See Also:
Constant Field Values

URI

public static final java.lang.String URI
See Also:
Constant Field Values

WIDTH

public static final java.lang.String WIDTH
See Also:
Constant Field Values

EVENTS

public static final java.lang.String EVENTS
See Also:
Constant Field Values

EVENT_TYPE

public static final java.lang.String EVENT_TYPE
See Also:
Constant Field Values

EVENT_DUPLICATIONS

public static final java.lang.String EVENT_DUPLICATIONS
See Also:
Constant Field Values

EVENT_SPECIATIONS

public static final java.lang.String EVENT_SPECIATIONS
See Also:
Constant Field Values

EVENT_LOSSES

public static final java.lang.String EVENT_LOSSES
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECURE

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECURE
See Also:
Constant Field Values

SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH

public static final java.lang.String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
See Also:
Constant Field Values

SEQUENCE_TYPE

public static final java.lang.String SEQUENCE_TYPE
See Also:
Constant Field Values

BINARY_CHARACTER

public static final java.lang.String BINARY_CHARACTER
See Also:
Constant Field Values

URI_DESC_ATTR

public static final java.lang.String URI_DESC_ATTR
See Also:
Constant Field Values

TYPE_ATTR

public static final java.lang.String TYPE_ATTR
See Also:
Constant Field Values

REFERENCE

public static final java.lang.String REFERENCE
See Also:
Constant Field Values

REFERENCE_DOI_ATTR

public static final java.lang.String REFERENCE_DOI_ATTR
See Also:
Constant Field Values

REFERENCE_DESC

public static final java.lang.String REFERENCE_DESC
See Also:
Constant Field Values

PROPERTY

public static final java.lang.String PROPERTY
See Also:
Constant Field Values

PROPERTY_REF

public static final java.lang.String PROPERTY_REF
See Also:
Constant Field Values

PROPERTY_UNIT

public static final java.lang.String PROPERTY_UNIT
See Also:
Constant Field Values

PROPERTY_DATATYPE

public static final java.lang.String PROPERTY_DATATYPE
See Also:
Constant Field Values

PROPERTY_APPLIES_TO

public static final java.lang.String PROPERTY_APPLIES_TO
See Also:
Constant Field Values

ID_REF

public static final java.lang.String ID_REF
See Also:
Constant Field Values

ANNOTATION_SOURCE_ATTR

public static final java.lang.String ANNOTATION_SOURCE_ATTR
See Also:
Constant Field Values

DISTRIBUTION_DESC

public static final java.lang.String DISTRIBUTION_DESC
See Also:
Constant Field Values

POINT

public static final java.lang.String POINT
See Also:
Constant Field Values

POINT_LONGITUDE

public static final java.lang.String POINT_LONGITUDE
See Also:
Constant Field Values

POINT_LATITUDE

public static final java.lang.String POINT_LATITUDE
See Also:
Constant Field Values

POINT_ALTITUDE

public static final java.lang.String POINT_ALTITUDE
See Also:
Constant Field Values

POINT_ALTITUDE_UNIT_ATTR

public static final java.lang.String POINT_ALTITUDE_UNIT_ATTR
See Also:
Constant Field Values

POINT_GEODETIC_DATUM

public static final java.lang.String POINT_GEODETIC_DATUM
See Also:
Constant Field Values

CLADE_DATE

public static final java.lang.String CLADE_DATE
See Also:
Constant Field Values

CLADE_DATE_UNIT

public static final java.lang.String CLADE_DATE_UNIT
See Also:
Constant Field Values

CLADE_DATE_DESC

public static final java.lang.String CLADE_DATE_DESC
See Also:
Constant Field Values

CLADE_DATE_MIN

public static final java.lang.String CLADE_DATE_MIN
See Also:
Constant Field Values

CLADE_DATE_MAX

public static final java.lang.String CLADE_DATE_MAX
See Also:
Constant Field Values

CLADE_DATE_VALUE

public static final java.lang.String CLADE_DATE_VALUE
See Also:
Constant Field Values

SEQUENCE_RELATION

public static final java.lang.String SEQUENCE_RELATION
See Also:
Constant Field Values

SEQUENCE_RELATION_TYPE

public static final java.lang.String SEQUENCE_RELATION_TYPE
See Also:
Constant Field Values

SEQUENCE_RELATION_ID_REF0

public static final java.lang.String SEQUENCE_RELATION_ID_REF0
See Also:
Constant Field Values

SEQUENCE_RELATION_ID_REF1

public static final java.lang.String SEQUENCE_RELATION_ID_REF1
See Also:
Constant Field Values

SEQUENCE_RELATION_DISTANCE

public static final java.lang.String SEQUENCE_RELATION_DISTANCE
See Also:
Constant Field Values

SEQUENCE_SOURCE_ID

public static final java.lang.String SEQUENCE_SOURCE_ID
See Also:
Constant Field Values

POLYGON

public static final java.lang.String POLYGON
See Also:
Constant Field Values
Overview  Package   Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES    
SUMMARY: NESTED | FIELD | CONSTR | METHOD DETAIL: FIELD | CONSTR | METHOD