org.forester.evoinference.matrix.distance
Class BasicSymmetricalDistanceMatrix

java.lang.Object
  org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public final class BasicSymmetricalDistanceMatrix
extends java.lang.Object
implements DistanceMatrix

Nested Class Summary

Nested classes/interfaces inherited from interface org.forester.evoinference.matrix.distance.DistanceMatrix

DistanceMatrix.Format

Constructor Summary

BasicSymmetricalDistanceMatrix(int size)

Method Summary

java.lang.String	getIdentifier(int i)
int	getIndex(java.lang.String identifier)
int	getSize()
double	getValue(int col, int row)
double[][]	getValues()
void	randomize(long seed)
void	setIdentifier(int i, java.lang.String identifier)
void	setRow(java.lang.String s, int row)
void	setValue(int col, int row, double d)
java.lang.String	toString()
java.lang.StringBuffer	toStringBuffer(DistanceMatrix.Format format)
void	write(java.io.Writer w)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BasicSymmetricalDistanceMatrix

public BasicSymmetricalDistanceMatrix(int size)

Method Detail

getValues

public final double[][] getValues()

getIdentifier

public final java.lang.String getIdentifier(int i)

Specified by:

getIdentifier in interface DistanceMatrix

getIndex

public final int getIndex(java.lang.String identifier)

Specified by:

getIndex in interface DistanceMatrix

getSize

public final int getSize()

Specified by:

getSize in interface DistanceMatrix

getValue

public final double getValue(int col,
                             int row)

Specified by:

getValue in interface DistanceMatrix

randomize

public final void randomize(long seed)

setIdentifier

public final void setIdentifier(int i,
                                java.lang.String identifier)

Specified by:

setIdentifier in interface DistanceMatrix

setRow

public final void setRow(java.lang.String s,
                         int row)

setValue

public final void setValue(int col,
                           int row,
                           double d)

Specified by:

setValue in interface DistanceMatrix

write

public final void write(java.io.Writer w)
                 throws java.io.IOException

Throws:

java.io.IOException

toString

public final java.lang.String toString()

Overrides:

toString in class java.lang.Object

toStringBuffer

public final java.lang.StringBuffer toStringBuffer(DistanceMatrix.Format format)

Specified by:

toStringBuffer in interface DistanceMatrix