org.forester.archaeopteryx.tools
Class SequenceDataRetriver

java.lang.Object
  org.forester.archaeopteryx.tools.RunnableProcess
      org.forester.archaeopteryx.tools.SequenceDataRetriver

All Implemented Interfaces:

java.lang.Runnable

public final class SequenceDataRetriver
extends RunnableProcess

Field Summary

static int

DEFAULT_LINES_TO_RETURN

Constructor Summary

SequenceDataRetriver(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)

Method Summary

static java.util.SortedSet<java.lang.String>	obtainSeqInformation(Phylogeny phy, boolean ext_nodes_only, boolean allow_to_set_taxonomic_data)
void	run()

Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess

end, start

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_LINES_TO_RETURN

public static final int DEFAULT_LINES_TO_RETURN

See Also:

Constant Field Values

Constructor Detail

SequenceDataRetriver

public SequenceDataRetriver(MainFrameApplication mf,
                            TreePanel treepanel,
                            Phylogeny phy)

Method Detail

obtainSeqInformation

public static java.util.SortedSet<java.lang.String> obtainSeqInformation(Phylogeny phy,
                                                                         boolean ext_nodes_only,
                                                                         boolean allow_to_set_taxonomic_data)
                                                                  throws java.io.IOException

Throws:

java.io.IOException

run

public void run()