org.forester.archaeopteryx.tools
Class Blast

java.lang.Object
  org.forester.archaeopteryx.tools.Blast

public final class Blast
extends java.lang.Object

Constructor Summary

Blast()

Method Summary

void	ddbjBlast(java.lang.String geneName)
static boolean	isContainsQueryForBlast(PhylogenyNode node)
static java.lang.String	obtainQueryForBlast(PhylogenyNode node)
static void	openNcbiBlastWeb(java.lang.String query, boolean is_nucleic_acids, javax.swing.JApplet applet, TreePanel p)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Blast

public Blast()

Method Detail

openNcbiBlastWeb

public static final void openNcbiBlastWeb(java.lang.String query,
                                          boolean is_nucleic_acids,
                                          javax.swing.JApplet applet,
                                          TreePanel p)

obtainQueryForBlast

public static final java.lang.String obtainQueryForBlast(PhylogenyNode node)

isContainsQueryForBlast

public static final boolean isContainsQueryForBlast(PhylogenyNode node)

ddbjBlast

public final void ddbjBlast(java.lang.String geneName)