org.biojava3.ws.hmmer
Class HmmerDomain

java.lang.Object
  org.biojava3.ws.hmmer.HmmerDomain

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<HmmerDomain>

public class HmmerDomain
extends java.lang.Object
implements java.lang.Comparable<HmmerDomain>, java.io.Serializable

Provides the details of a domain hit

Since:

3.0.3

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

HmmerDomain()

Method Summary

int	compareTo(HmmerDomain o)
java.lang.Integer	getAliLenth()
java.lang.String	getHmmAcc()
java.lang.String	getHmmDesc()
java.lang.Integer	getHmmFrom()
java.lang.String	getHmmName()
java.lang.Integer	getHmmTo()
java.lang.Integer	getSimCount()
java.lang.Integer	getSqFrom()
java.lang.Integer	getSqTo()
void	setAliLenth(java.lang.Integer aliLenth)
void	setHmmAcc(java.lang.String hmmAcc)
void	setHmmDesc(java.lang.String hmmDesc)
void	setHmmFrom(java.lang.Integer hmmFrom)
void	setHmmName(java.lang.String hmmName)
void	setHmmTo(java.lang.Integer hmmTo)
void	setSimCount(java.lang.Integer simCount)
void	setSqFrom(java.lang.Integer sqFrom)
void	setSqTo(java.lang.Integer sqTo)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

HmmerDomain

public HmmerDomain()

Method Detail

getSqFrom

public java.lang.Integer getSqFrom()

setSqFrom

public void setSqFrom(java.lang.Integer sqFrom)

getSqTo

public java.lang.Integer getSqTo()

setSqTo

public void setSqTo(java.lang.Integer sqTo)

getAliLenth

public java.lang.Integer getAliLenth()

setAliLenth

public void setAliLenth(java.lang.Integer aliLenth)

getSimCount

public java.lang.Integer getSimCount()

setSimCount

public void setSimCount(java.lang.Integer simCount)

getHmmFrom

public java.lang.Integer getHmmFrom()

setHmmFrom

public void setHmmFrom(java.lang.Integer hmmFrom)

getHmmTo

public java.lang.Integer getHmmTo()

setHmmTo

public void setHmmTo(java.lang.Integer hmmTo)

getHmmName

public java.lang.String getHmmName()

setHmmName

public void setHmmName(java.lang.String hmmName)

getHmmDesc

public java.lang.String getHmmDesc()

setHmmDesc

public void setHmmDesc(java.lang.String hmmDesc)

getHmmAcc

public java.lang.String getHmmAcc()

setHmmAcc

public void setHmmAcc(java.lang.String hmmAcc)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

compareTo

public int compareTo(HmmerDomain o)

Specified by:

compareTo in interface java.lang.Comparable<HmmerDomain>