org.biojava3.protmod
Interface ProteinModification

All Known Implementing Classes:

ProteinModificationImpl

public interface ProteinModification

This interface defines information about a specific protein modification.

Since:

3.0

Author:

Jianjiong Gao

Method Summary

ModificationCategory	getCategory()
ModificationCondition	getCondition()
java.lang.String	getDescription()
java.lang.String	getFormula()
java.lang.String	getId()
java.util.Set<java.lang.String>	getKeywords()
ModificationOccurrenceType	getOccurrenceType()
java.lang.String	getPdbccId()
java.lang.String	getPdbccName()
java.lang.String	getPsimodId()
java.lang.String	getPsimodName()
java.lang.String	getResidId()
java.lang.String	getResidName()
java.lang.String	getSystematicName()

Method Detail

getId

java.lang.String getId()

Returns:

modification id.

getPdbccId

java.lang.String getPdbccId()

Returns:

Protein Data Bank Chemical Component ID.

getPdbccName

java.lang.String getPdbccName()

Returns:

Protein Data Bank Chemical Component name.

getResidId

java.lang.String getResidId()

Returns:

RESID ID.

getResidName

java.lang.String getResidName()

Returns:

RESID name.

getPsimodId

java.lang.String getPsimodId()

Returns:

PSI-MOD ID.

getPsimodName

java.lang.String getPsimodName()

Returns:

PSI-MOD name.

getSystematicName

java.lang.String getSystematicName()

Returns:

Systematic name.

getDescription

java.lang.String getDescription()

Returns:

Description.

getKeywords

java.util.Set<java.lang.String> getKeywords()

Returns:

a set of keywords.

getCondition

ModificationCondition getCondition()

Returns:

ModificationCondition

getFormula

java.lang.String getFormula()

Returns:

formula of the modified residue.

getCategory

ModificationCategory getCategory()

Returns:

the modification category.

getOccurrenceType

ModificationOccurrenceType getOccurrenceType()

Returns:

the modification occurrence type.