org.biojava3.genome.parsers.geneid
Class GeneIDXMLReader

java.lang.Object
  org.biojava3.genome.parsers.geneid.GeneIDXMLReader

public class GeneIDXMLReader
extends java.lang.Object

Author:

Scooter Willis

Constructor Summary

GeneIDXMLReader(java.lang.String geneidXMLFile)

Method Summary

java.util.LinkedHashMap<java.lang.String,DNASequence>	getDNACodingSequences()
java.util.LinkedHashMap<java.lang.String,ProteinSequence>	getProteinSequences()
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneIDXMLReader

public GeneIDXMLReader(java.lang.String geneidXMLFile)
                throws java.lang.Exception

Throws:

java.lang.Exception

Method Detail

getProteinSequences

public java.util.LinkedHashMap<java.lang.String,ProteinSequence> getProteinSequences()
                                                                              throws java.lang.Exception

Throws:

java.lang.Exception

getDNACodingSequences

public java.util.LinkedHashMap<java.lang.String,DNASequence> getDNACodingSequences()
                                                                            throws java.lang.Exception

Throws:

java.lang.Exception

main

public static void main(java.lang.String[] args)