org.biojava3.genome.homology
Class GFF3FromUniprotBlastHits

java.lang.Object
  org.biojava3.genome.homology.GFF3FromUniprotBlastHits

public class GFF3FromUniprotBlastHits
extends java.lang.Object

Author:

Scooter Willis , Mark Chapman

Constructor Summary

GFF3FromUniprotBlastHits()

Method Summary

static void	main(java.lang.String[] args)
void	process(java.io.File xmlBlastHits, double ecutoff, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)
void	process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GFF3FromUniprotBlastHits

public GFF3FromUniprotBlastHits()

Method Detail

process

public void process(java.io.File xmlBlastHits,
                    double ecutoff,
                    java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap,
                    java.io.OutputStream gff3Output)
             throws java.lang.Exception

Throws:

java.lang.Exception

process

public void process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits,
                    java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap,
                    java.io.OutputStream gff3Output)
             throws java.lang.Exception

Throws:

java.lang.Exception

main

public static void main(java.lang.String[] args)