org.biojava3.core.sequence.location
Class SequenceLocation<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object
  org.biojava3.core.sequence.location.template.AbstractLocation
      org.biojava3.core.sequence.location.SimpleLocation
          org.biojava3.core.sequence.location.SequenceLocation<S,C>

All Implemented Interfaces:

java.lang.Iterable<Location>, Location, Accessioned

public class SequenceLocation<S extends AbstractSequence<C>,C extends Compound>
extends SimpleLocation

A location in a sequence that keeps a reference to its parent sequence

Author:

Scooter Willis

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava3.core.sequence.location.template.Location

Location.Tools

Field Summary

Fields inherited from interface org.biojava3.core.sequence.location.template.Location

EMPTY

Constructor Summary

SequenceLocation(int start, int end, S sequence)

Method Summary

S	getSequence()

Methods inherited from class org.biojava3.core.sequence.location.template.AbstractLocation

assertLocation, canComplement, equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, iterator, reverseSequence, setAccession, setBetweenCompounds, setCircular, setEnd, setStart, setStrand, setSubLocations, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SequenceLocation

public SequenceLocation(int start,
                        int end,
                        S sequence)

Method Detail

getSequence

public S getSequence()

Returns:

the sequence