org.biojava3.core.sequence.compound
Class DNACompoundSet

java.lang.Object
  org.biojava3.core.sequence.template.AbstractCompoundSet<C>
      org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>
          org.biojava3.core.sequence.compound.DNACompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

Direct Known Subclasses:

AmbiguityDNACompoundSet

public class DNACompoundSet
extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:

Andy Yates

Constructor Summary

DNACompoundSet()

Method Summary

static DNACompoundSet	getDNACompoundSet()
NucleotideCompound	newNucleotideCompound(java.lang.String base, java.lang.String complement, java.lang.String... equivalents)

Methods inherited from class org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava3.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DNACompoundSet

public DNACompoundSet()

Method Detail

getDNACompoundSet

public static DNACompoundSet getDNACompoundSet()

newNucleotideCompound

public NucleotideCompound newNucleotideCompound(java.lang.String base,
                                                java.lang.String complement,
                                                java.lang.String... equivalents)

Specified by:

newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>