org.biojava3.alignment.aaindex
Class AAIndexFileParser

java.lang.Object
  org.biojava3.alignment.aaindex.AAIndexFileParser

public class AAIndexFileParser
extends java.lang.Object

Constructor Summary

AAIndexFileParser()

Method Summary

java.util.Map<java.lang.String,SubstitutionMatrix<AminoAcidCompound>>	getMatrices()
void	parse(java.io.InputStream inputStream) parse an inputStream that points to an AAINDEX database file

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AAIndexFileParser

public AAIndexFileParser()

Method Detail

parse

public void parse(java.io.InputStream inputStream)
           throws java.io.IOException

parse an inputStream that points to an AAINDEX database file

Parameters:

inputStream -

Throws:

java.io.IOException

getMatrices

public java.util.Map<java.lang.String,SubstitutionMatrix<AminoAcidCompound>> getMatrices()