org.biojava3.aaproperties.xml
Class AminoAcidCompositionTable

java.lang.Object
  org.biojava3.aaproperties.xml.AminoAcidCompositionTable

public class AminoAcidCompositionTable
extends java.lang.Object

Constructor Summary

AminoAcidCompositionTable()

AminoAcidCompositionTable(java.util.List<AminoAcidComposition> aaList)

Method Summary

void	computeMolecularWeight(ElementTable eTable) Computes and store the molecular weight of each amino acid by its symbol in aaSymbol2MolecularWeight.
java.util.List<AminoAcidComposition>	getAminoacid()
ModifiedAminoAcidCompoundSet	getAminoAcidCompoundSet()
double	getMolecularWeight(java.lang.Character aaSymbol)
java.util.Set<java.lang.Character>	getSymbolSet()
void	setAminoacid(java.util.List<AminoAcidComposition> aminoacid)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AminoAcidCompositionTable

public AminoAcidCompositionTable()

AminoAcidCompositionTable

public AminoAcidCompositionTable(java.util.List<AminoAcidComposition> aaList)

Method Detail

getAminoAcidCompoundSet

public ModifiedAminoAcidCompoundSet getAminoAcidCompoundSet()

getAminoacid

public java.util.List<AminoAcidComposition> getAminoacid()

setAminoacid

public void setAminoacid(java.util.List<AminoAcidComposition> aminoacid)

getSymbolSet

public java.util.Set<java.lang.Character> getSymbolSet()

computeMolecularWeight

public void computeMolecularWeight(ElementTable eTable)

Computes and store the molecular weight of each amino acid by its symbol in aaSymbol2MolecularWeight.

Parameters:

eTable - Stores the mass of elements and isotopes

getMolecularWeight

public double getMolecularWeight(java.lang.Character aaSymbol)
                          throws java.lang.NullPointerException

Parameters:

aaSymbol - Standard symbol of Amino Acid

Returns:

the molecular weight given its symbol

Throws:

java.lang.NullPointerException - thrown if AminoAcidCompositionTable.computeMolecularWeight(ElementTable) is not called before this method