org.biojava.bio.structure.scop
Class ScopDescription

java.lang.Object
  org.biojava.bio.structure.scop.ScopDescription

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class ScopDescription
extends java.lang.Object
implements java.io.Serializable, java.lang.Cloneable

Contains data from dir.des.scop.txt_1.75

e.g

 SunID  Cat     Class           Name    Description
 -----  ---     -----           ----    -----------
 26154  px      b.47.1.2        d1nrs.1 1nrs L:,H:
 125030 px      b.47.1.2        d1zgia1 1zgi A:1A-245
 

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

ScopDescription()

Method Summary

protected java.lang.Object	clone()
boolean	equals(java.lang.Object obj) Compares the fields sunID, category, classificationId, and name for equality
ScopCategory	getCategory()
java.lang.String	getClassificationId()
java.lang.String	getClassificationId(ScopCategory category) Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).
java.lang.String	getDescription()
java.lang.String	getName()
int	getSunID()
int	hashCode()
void	setCategory(ScopCategory category)
void	setClassificationId(java.lang.String classificationId)
void	setDescription(java.lang.String description)
void	setName(java.lang.String name)
void	setSunID(int sunID)
java.lang.String	toString()

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ScopDescription

public ScopDescription()

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getSunID

public int getSunID()

setSunID

public void setSunID(int sunID)

getCategory

public ScopCategory getCategory()

setCategory

public void setCategory(ScopCategory category)

getClassificationId

public java.lang.String getClassificationId()

setClassificationId

public void setClassificationId(java.lang.String classificationId)

getName

public java.lang.String getName()

setName

public void setName(java.lang.String name)

getDescription

public java.lang.String getDescription()

setDescription

public void setDescription(java.lang.String description)

getClassificationId

public java.lang.String getClassificationId(ScopCategory category)

Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).

Example: for SCOP family "b.5.1.1", getClassificationId(ScopCategory.Superfamily) => "b.5.1"

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

Returns:

See Also:

Object.hashCode()

equals

public boolean equals(java.lang.Object obj)

Compares the fields sunID, category, classificationId, and name for equality

Overrides:

equals in class java.lang.Object

Parameters:

obj -

Returns:

See Also:

Object.equals(java.lang.Object)

clone

protected java.lang.Object clone()
                          throws java.lang.CloneNotSupportedException

Overrides:

clone in class java.lang.Object

Throws:

java.lang.CloneNotSupportedException