org.biojava.bio.structure.io
Class PDBBioAssemblyParser

java.lang.Object
  org.biojava.bio.structure.io.PDBBioAssemblyParser

public class PDBBioAssemblyParser
extends java.lang.Object

Constructor Summary

PDBBioAssemblyParser()

Method Summary

void	finalizeCurrentBioMolecule()
int	getNrBioAssemblies()
java.util.Map<java.lang.Integer,java.util.List<ModelTransformationMatrix>>	getTransformationMap()
void	pdb_REMARK_350_Handler(java.lang.String line) See here for the current spec: http://www.wwpdb.org/documentation/format33/remarks2.html
void	setTransformationMap(java.util.Map<java.lang.Integer,java.util.List<ModelTransformationMatrix>> transformationMap)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDBBioAssemblyParser

public PDBBioAssemblyParser()

Method Detail

pdb_REMARK_350_Handler

public void pdb_REMARK_350_Handler(java.lang.String line)

See here for the current spec: http://www.wwpdb.org/documentation/format33/remarks2.html

Parameters:

line -

finalizeCurrentBioMolecule

public void finalizeCurrentBioMolecule()

getTransformationMap

public java.util.Map<java.lang.Integer,java.util.List<ModelTransformationMatrix>> getTransformationMap()

setTransformationMap

public void setTransformationMap(java.util.Map<java.lang.Integer,java.util.List<ModelTransformationMatrix>> transformationMap)

getNrBioAssemblies

public int getNrBioAssemblies()