org.biojava.bio.structure.domain
Class RemotePDPProvider

java.lang.Object
  org.biojava.bio.structure.domain.SerializableCache<java.lang.String,java.util.SortedSet<java.lang.String>>
      org.biojava.bio.structure.domain.RemotePDPProvider

All Implemented Interfaces:

PDPProvider

public class RemotePDPProvider
extends SerializableCache<java.lang.String,java.util.SortedSet<java.lang.String>>
implements PDPProvider

A class that provided PDP assignments that are loaded from a remote web server

Author:

Andreas Prlic

Field Summary

static java.lang.String

DEFAULT_SERVER

Fields inherited from class org.biojava.bio.structure.domain.SerializableCache

cacheFileName, serializedCache

Constructor Summary

RemotePDPProvider()

RemotePDPProvider(boolean useCache)

Method Summary

Structure	getDomain(java.lang.String pdpDomainName, AtomCache cache)
java.util.SortedSet<java.lang.String>	getPDPDomainNamesForPDB(java.lang.String pdbId)
java.lang.String	getServer()
static void	main(java.lang.String[] args)
void	setServer(java.lang.String server)

Methods inherited from class org.biojava.bio.structure.domain.SerializableCache

cache, disableCache, enableCache, flushCache, get, isCacheEnabled, isDebug, reloadFromFile, setDebug

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_SERVER

public static final java.lang.String DEFAULT_SERVER

See Also:

Constant Field Values

Constructor Detail

RemotePDPProvider

public RemotePDPProvider()

RemotePDPProvider

public RemotePDPProvider(boolean useCache)

Method Detail

main

public static void main(java.lang.String[] args)

getServer

public java.lang.String getServer()

setServer

public void setServer(java.lang.String server)

getDomain

public Structure getDomain(java.lang.String pdpDomainName,
                           AtomCache cache)

Specified by:

getDomain in interface PDPProvider

getPDPDomainNamesForPDB

public java.util.SortedSet<java.lang.String> getPDPDomainNamesForPDB(java.lang.String pdbId)

Specified by:

getPDPDomainNamesForPDB in interface PDPProvider