org.biojava.bio.structure.domain
Class PDBDomainProvider

java.lang.Object
  org.biojava.bio.structure.domain.PDBDomainProvider

All Implemented Interfaces:

DomainProvider

public class PDBDomainProvider
extends java.lang.Object
implements DomainProvider

Class to fetch domains through the RCSB's REST API.

Author:

Spencer Bliven

Field Summary

static java.lang.String	DEFAULT_PDB_API_URL
static java.lang.String	DEFAULT_PDB_HOST

Constructor Summary

PDBDomainProvider()

PDBDomainProvider(java.lang.String base, int cutoff)

Method Summary

java.util.SortedSet<java.lang.String>	getDomainNames(java.lang.String name) Gets a list of domain representatives for a given PDB ID.
java.util.SortedSet<java.lang.String>	getRepresentativeDomains() Gets a list of all domain representatives
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_PDB_HOST

public static final java.lang.String DEFAULT_PDB_HOST

See Also:

Constant Field Values

DEFAULT_PDB_API_URL

public static final java.lang.String DEFAULT_PDB_API_URL

See Also:

Constant Field Values

Constructor Detail

PDBDomainProvider

public PDBDomainProvider()

PDBDomainProvider

public PDBDomainProvider(java.lang.String base,
                         int cutoff)

Parameters:

base -

cutoff -

Method Detail

getDomainNames

public java.util.SortedSet<java.lang.String> getDomainNames(java.lang.String name)

Gets a list of domain representatives for a given PDB ID.

Specified by:

getDomainNames in interface DomainProvider

getRepresentativeDomains

public java.util.SortedSet<java.lang.String> getRepresentativeDomains()

Gets a list of all domain representatives

Specified by:

getRepresentativeDomains in interface DomainProvider

main

public static void main(java.lang.String[] args)