org.biojava.bio.structure.cath
Class CathDomain

java.lang.Object
  org.biojava.bio.structure.cath.CathDomain

All Implemented Interfaces:

java.io.Serializable

public class CathDomain
extends java.lang.Object
implements java.io.Serializable

A class which represents a single CATH domain.

See Also:

Serialized Form

Field Summary

static long

serialVersionUID

Constructor Summary

CathDomain()

Method Summary

java.lang.Integer	getArchitectureId()
java.lang.String	getCATH()
java.lang.Integer	getClassId()
java.lang.Integer	getClassificationId(CathCategory cathCategory)
java.lang.String	getComment()
java.util.Date	getDate()
java.lang.Integer	getDomainCounter()
java.lang.Integer	getDomainId()
java.lang.String	getDomainName()
java.lang.String	getFormat()
java.lang.Integer	getHomologyId()
java.lang.Integer	getIdenticalSequenceFamilyId()
java.lang.Integer	getLength()
java.lang.Integer	getLikeSequenceFamilyId()
java.lang.String	getName()
java.lang.Integer	getOrthologousSequenceFamilyId()
java.lang.String	getPdbId()
java.lang.Double	getResolution()
java.util.List<CathSegment>	getSegments()
java.lang.String	getSequence()
java.lang.Integer	getSequenceFamilyId()
java.lang.String	getSequenceHeader()
java.lang.String	getSOILD()
java.lang.String	getSource()
java.lang.Integer	getTopologyId()
java.lang.String	getVersion()
void	setArchitectureId(java.lang.Integer architectureId)
void	setCATH(java.lang.String cathCode)
void	setClassId(java.lang.Integer classId)
void	setComment(java.lang.String comment)
void	setDate(java.util.Date date)
void	setDomainCounter(java.lang.Integer domainCounter)
void	setDomainName(java.lang.String domainName)
void	setFormat(java.lang.String format)
void	setHomologyId(java.lang.Integer homologyId)
void	setIdenticalSequenceFamilyId(java.lang.Integer identicalSequenceFamilyId)
void	setLength(java.lang.Integer length)
void	setLikeSequenceFamilyId(java.lang.Integer likeSequenceFamilyId)
void	setName(java.lang.String name)
void	setOrthologousSequenceFamilyId(java.lang.Integer orthologousSequenceFamilyId)
void	setResolution(java.lang.Double resolution)
void	setSegments(java.util.List<CathSegment> segments)
void	setSequence(java.lang.String sequence)
void	setSequenceFamilyId(java.lang.Integer sequenceFamilyId)
void	setSequenceHeader(java.lang.String sequenceHeader)
void	setSOLID(java.lang.String cathCode)
void	setSource(java.lang.String source)
void	setTopologyId(java.lang.Integer topologyId)
void	setVersion(java.lang.String version)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

CathDomain

public CathDomain()

Method Detail

getDomainName

public java.lang.String getDomainName()

setDomainName

public void setDomainName(java.lang.String domainName)

getPdbId

public java.lang.String getPdbId()

getDomainId

public java.lang.Integer getDomainId()

getClassId

public java.lang.Integer getClassId()

setClassId

public void setClassId(java.lang.Integer classId)

getArchitectureId

public java.lang.Integer getArchitectureId()

setArchitectureId

public void setArchitectureId(java.lang.Integer architectureId)

getTopologyId

public java.lang.Integer getTopologyId()

setTopologyId

public void setTopologyId(java.lang.Integer topologyId)

getHomologyId

public java.lang.Integer getHomologyId()

setHomologyId

public void setHomologyId(java.lang.Integer homologyId)

getSequenceFamilyId

public java.lang.Integer getSequenceFamilyId()

setSequenceFamilyId

public void setSequenceFamilyId(java.lang.Integer sequenceFamilyId)

getOrthologousSequenceFamilyId

public java.lang.Integer getOrthologousSequenceFamilyId()

setOrthologousSequenceFamilyId

public void setOrthologousSequenceFamilyId(java.lang.Integer orthologousSequenceFamilyId)

getLikeSequenceFamilyId

public java.lang.Integer getLikeSequenceFamilyId()

setLikeSequenceFamilyId

public void setLikeSequenceFamilyId(java.lang.Integer likeSequenceFamilyId)

getIdenticalSequenceFamilyId

public java.lang.Integer getIdenticalSequenceFamilyId()

setIdenticalSequenceFamilyId

public void setIdenticalSequenceFamilyId(java.lang.Integer identicalSequenceFamilyId)

getDomainCounter

public java.lang.Integer getDomainCounter()

setDomainCounter

public void setDomainCounter(java.lang.Integer domainCounter)

getLength

public java.lang.Integer getLength()

setLength

public void setLength(java.lang.Integer length)

getResolution

public java.lang.Double getResolution()

setResolution

public void setResolution(java.lang.Double resolution)

setCATH

public void setCATH(java.lang.String cathCode)

getCATH

public java.lang.String getCATH()

setSOLID

public void setSOLID(java.lang.String cathCode)

getSOILD

public java.lang.String getSOILD()

getClassificationId

public java.lang.Integer getClassificationId(CathCategory cathCategory)

getFormat

public java.lang.String getFormat()

setFormat

public void setFormat(java.lang.String format)

getVersion

public java.lang.String getVersion()

setVersion

public void setVersion(java.lang.String version)

getDate

public java.util.Date getDate()

setDate

public void setDate(java.util.Date date)

getName

public java.lang.String getName()

setName

public void setName(java.lang.String name)

getSource

public java.lang.String getSource()

setSource

public void setSource(java.lang.String source)

getSequenceHeader

public java.lang.String getSequenceHeader()

setSequenceHeader

public void setSequenceHeader(java.lang.String sequenceHeader)

getSequence

public java.lang.String getSequence()

setSequence

public void setSequence(java.lang.String sequence)

getSegments

public java.util.List<CathSegment> getSegments()

setSegments

public void setSegments(java.util.List<CathSegment> segments)

getComment

public java.lang.String getComment()

setComment

public void setComment(java.lang.String comment)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object