org.biojava.bio.structure.align.xml
Class AFPChainFlipper

java.lang.Object
  org.biojava.bio.structure.align.xml.AFPChainFlipper

public class AFPChainFlipper
extends java.lang.Object

Constructor Summary

AFPChainFlipper()

Method Summary

static AFPChain

flipChain(AFPChain o) Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AFPChainFlipper

public AFPChainFlipper()

Method Detail

flipChain

public static AFPChain flipChain(AFPChain o)
                          throws StructureException

Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain. This is a utility function for AFPChainXMLParser. You will have to call AFPCHainXMLParser.rebuildAFPChain in order to get twisted groups...

Parameters:

o - ... the original AFPCHain that should be flipped

Returns:

a cloned AFPCHain which the positions of name1 and name2 flipped.

Throws:

StructureException