org.biojava.bio.structure.align.gui
Class MenuCreator

java.lang.Object
  org.biojava.bio.structure.align.gui.MenuCreator

public class MenuCreator
extends java.lang.Object

Create the menu for Fatcat/CE structure alignment stuff

Since:

1.7

Author:

Andreas Prlic

Field Summary

static java.lang.String	ALIGNMENT_PANEL
static java.lang.String	EQR_COLOR
static java.lang.String	FATCAT_BLOCK
static java.lang.String	FATCAT_TEXT
static java.lang.String	LOAD_ALIGNMENT_XML
static java.lang.String	LOAD_DB_RESULTS
static java.lang.String	PAIRS_ONLY
static java.lang.String	PRINT
static java.lang.String	SAVE_ALIGNMENT_XML
static java.lang.String	SELECT_EQR
static java.lang.String	SIMILARITY_COLOR
static java.lang.String	TEXT_ONLY

Constructor Summary

MenuCreator()

Method Summary

static javax.swing.ImageIcon	createImageIcon(java.lang.String path) Returns an ImageIcon, or null if the path was invalid.
static javax.swing.JMenuItem	getAboutMenuItem()
static javax.swing.JMenuBar	getAlignmentTextMenu(javax.swing.JFrame frame, java.awt.event.ActionListener actionListener, AFPChain afpChain) Create the menu for the "Text Only" representation of alignments
static javax.swing.JMenuItem	getCloseMenuItem(javax.swing.JFrame frame)
static javax.swing.JMenuItem	getDBResultMenuItem()
static javax.swing.JMenuItem	getExitMenuItem()
static javax.swing.JMenuItem	getExportPDBMenuItem(StructureAlignmentJmol parent)
static javax.swing.JMenuItem	getHelpMenuItem()
static javax.swing.JMenuItem	getLoadMenuItem()
static javax.swing.JMenuItem	getOpenPDBMenuItem()
static javax.swing.JMenuItem	getPrintMenuItem()
static javax.swing.JMenuItem	getSaveAlignmentMenuItem(AFPChain afpChain)
static javax.swing.JMenuItem	getShowPDBMenuItem()
static javax.swing.JMenuBar	initAlignmentGUIMenu(javax.swing.JFrame frame)
static javax.swing.JMenuBar	initMenu(javax.swing.JFrame frame, StructureAlignmentJmol parent, AFPChain afpChain) provide a JMenuBar that can be added to a JFrame
static void	showAboutDialog() show some info about this gui
protected static void	showMemoryMonitor()
static void	showSystemInfo()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PRINT

public static final java.lang.String PRINT

See Also:

Constant Field Values

ALIGNMENT_PANEL

public static final java.lang.String ALIGNMENT_PANEL

See Also:

Constant Field Values

TEXT_ONLY

public static final java.lang.String TEXT_ONLY

See Also:

Constant Field Values

PAIRS_ONLY

public static final java.lang.String PAIRS_ONLY

See Also:

Constant Field Values

SELECT_EQR

public static final java.lang.String SELECT_EQR

See Also:

Constant Field Values

SIMILARITY_COLOR

public static final java.lang.String SIMILARITY_COLOR

See Also:

Constant Field Values

EQR_COLOR

public static final java.lang.String EQR_COLOR

See Also:

Constant Field Values

FATCAT_BLOCK

public static final java.lang.String FATCAT_BLOCK

See Also:

Constant Field Values

LOAD_DB_RESULTS

public static final java.lang.String LOAD_DB_RESULTS

See Also:

Constant Field Values

SAVE_ALIGNMENT_XML

public static final java.lang.String SAVE_ALIGNMENT_XML

See Also:

Constant Field Values

LOAD_ALIGNMENT_XML

public static final java.lang.String LOAD_ALIGNMENT_XML

See Also:

Constant Field Values

FATCAT_TEXT

public static final java.lang.String FATCAT_TEXT

See Also:

Constant Field Values

Constructor Detail

MenuCreator

public MenuCreator()

Method Detail

initMenu

public static javax.swing.JMenuBar initMenu(javax.swing.JFrame frame,
                                            StructureAlignmentJmol parent,
                                            AFPChain afpChain)

provide a JMenuBar that can be added to a JFrame

Returns:

a JMenuBar

getDBResultMenuItem

public static javax.swing.JMenuItem getDBResultMenuItem()

getShowPDBMenuItem

public static javax.swing.JMenuItem getShowPDBMenuItem()

getOpenPDBMenuItem

public static javax.swing.JMenuItem getOpenPDBMenuItem()

getLoadMenuItem

public static javax.swing.JMenuItem getLoadMenuItem()

getAlignmentTextMenu

public static javax.swing.JMenuBar getAlignmentTextMenu(javax.swing.JFrame frame,
                                                        java.awt.event.ActionListener actionListener,
                                                        AFPChain afpChain)

Create the menu for the "Text Only" representation of alignments

Parameters:

frame -

actionListener -

afpChain -

Returns:

a JMenuBar

getPrintMenuItem

public static javax.swing.JMenuItem getPrintMenuItem()

getExportPDBMenuItem

public static javax.swing.JMenuItem getExportPDBMenuItem(StructureAlignmentJmol parent)

getSaveAlignmentMenuItem

public static javax.swing.JMenuItem getSaveAlignmentMenuItem(AFPChain afpChain)

getAboutMenuItem

public static javax.swing.JMenuItem getAboutMenuItem()

getExitMenuItem

public static javax.swing.JMenuItem getExitMenuItem()

getHelpMenuItem

public static javax.swing.JMenuItem getHelpMenuItem()

getCloseMenuItem

public static javax.swing.JMenuItem getCloseMenuItem(javax.swing.JFrame frame)

showAboutDialog

public static void showAboutDialog()

show some info about this gui

showSystemInfo

public static void showSystemInfo()

createImageIcon

public static javax.swing.ImageIcon createImageIcon(java.lang.String path)

Returns an ImageIcon, or null if the path was invalid.

Parameters:

path - the path to the icon

Returns:

ImageIcon object

initAlignmentGUIMenu

public static javax.swing.JMenuBar initAlignmentGUIMenu(javax.swing.JFrame frame)

showMemoryMonitor

protected static void showMemoryMonitor()