org.biojava.bio.structure.align.gui
Class AlignmentCalcDB

java.lang.Object
  org.biojava.bio.structure.align.gui.AlignmentCalcDB

All Implemented Interfaces:

java.lang.Runnable, AlignmentCalculationRunnable

public class AlignmentCalcDB
extends java.lang.Object
implements AlignmentCalculationRunnable

Field Summary

static java.util.logging.Logger

logger

Constructor Summary

AlignmentCalcDB(AlignmentGui parent, Structure s1, java.lang.String name1, UserConfiguration config, java.lang.String outFile, java.lang.Boolean domainSplit)

Method Summary

void	cleanup()
StructureAlignment	getAlgorithm()
static java.lang.String	getLegend(java.lang.String algorithmName)
void	interrupt() stops what is currently happening and does not continue
boolean	isInterrupted()
void	run()
void	setAlgorithm(StructureAlignment algo)
void	setNrCPUs(int useNrCPUs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

public static java.util.logging.Logger logger

Constructor Detail

AlignmentCalcDB

public AlignmentCalcDB(AlignmentGui parent,
                       Structure s1,
                       java.lang.String name1,
                       UserConfiguration config,
                       java.lang.String outFile,
                       java.lang.Boolean domainSplit)

Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()

setAlgorithm

public void setAlgorithm(StructureAlignment algo)

getLegend

public static java.lang.String getLegend(java.lang.String algorithmName)

run

public void run()

Specified by:

run in interface java.lang.Runnable

interrupt

public void interrupt()

stops what is currently happening and does not continue

Specified by:

interrupt in interface AlignmentCalculationRunnable

cleanup

public void cleanup()

Specified by:

cleanup in interface AlignmentCalculationRunnable

setNrCPUs

public void setNrCPUs(int useNrCPUs)

Specified by:

setNrCPUs in interface AlignmentCalculationRunnable

isInterrupted

public boolean isInterrupted()