org.biojava.bio.structure.align.ce
Class CeCPMain.CPRange

java.lang.Object
  org.biojava.bio.structure.align.ce.CeCPMain.CPRange

Enclosing class:

CeCPMain

protected static class CeCPMain.CPRange
extends java.lang.Object

Tiny wrapper for the disallowed regions of an alignment.

Author:

Spencer Bliven

See Also:

CeCPMain.calculateMinCP(int[], int, int, int)

Field Summary

int	c first allowed c-term
int	mid midpoint of the alignment
int	n last allowed n-term

Constructor Summary

protected

CeCPMain.CPRange()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

n

public int n

last allowed n-term

mid

public int mid

midpoint of the alignment

c

public int c

first allowed c-term

Constructor Detail

CeCPMain.CPRange

protected CeCPMain.CPRange()